NO02G05700, NO02G05700 (gene) Nannochloropsis oceanica

Overview
NameNO02G05700
Unique NameNO02G05700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2054
Alignment locationchr2:1514991..1517044 -

Link to JBrowse

Properties
Property NameValue
DescriptionAssembly protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1514991..1517044 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR037284SUF_FeS_clus_asmbl_SufBD_sf
IPR011542SUF_FeS_clus_asmbl_SufD
IPR000825SUF_FeS_clus_asmbl_SufBD
Homology
BLAST of NO02G05700 vs. NCBI_GenBank
Match: XP_005855638.1 (assembly protein [Nannochloropsis gaditana CCMP526] >EKU20727.1 assembly protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 857.8 bits (2215), Expect = 1.900e-245
Identity = 425/567 (74.96%), Postives = 488/567 (86.07%), Query Frame = 0
Query:   10 RQWGASYLF---ATAALLGTVQAFLLPFNTPAQPPPSLAKDSGLWWQQQRQQG--RSTKLQAALAERPRSPSVTLDDSTALIEAETVALKPPSREEQARDWFNSVLSSREPNPLFHAATELGVGRLVDGETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSDRLYEVCPEVGMAESYEYLSI 572
            R+ GAS  F   ATA   G  QAFL PFN PAQ    + K S +  QQ +Q+   R+T+L A LA+RPRS S   ++S+  IEAETVALKPPSREEQA+DWFN+VL+ R+P+P F  ATE GV R + GETRAPTR+EEAWRFTDLSR+Y R+P K PAVLQPAQV  +K K++EHTLEVCEGR +VFVDGV RPE S    V  LKEEG +EGW+ GSIF+F+ EEQEEL RE+EW+PEVG+RHTLA+GSLPF  LNQACVKDAACLVV ERGEM+APVQF+F+STS++GEGG EG K+ RVSHPRL V+A+KRSAGKFVQSY+DIG G  LANACTTVRVDRRAEVQHLHANE+G +G +FDAVSVTTKKLSAY+NVF+NVGG++GR+N QAT+NGTEGRVDTEG+T++GEEQELDIHSYIHH RK G+SNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGI RREARQVLMMGFAAQVYNQ+PCE+M+KRL +RLY+VCP+VG+A+ YEYLS+
Sbjct:   11 RRRGASTGFIMAATAVAAGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTS--FEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELS---HVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 572          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: EWM30100.1 (assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 854.4 bits (2206), Expect = 2.100e-244
Identity = 421/568 (74.12%), Postives = 488/568 (85.92%), Query Frame = 0
Query:    8 QRRQWGASYLFATAAL--LGTVQAFLLPFNTPAQPPPSLAKDSGLWWQQQRQQG--RSTKLQAALAERPRSPSVTLDDSTALIEAETVALKPPSREEQARDWFNSVLSSREPNPLFHAATELGVGRLVDGETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSDRLYEVCPEVGMAESYEYLSI 572
            +RR     ++ A  A+  +G  QAFL PFN PAQ    + K S +  QQ +Q+   R+T+L A LA+RPRS S   ++S+  IEAETVALKPPSREEQA+DWFN+VL+ R+P+P F  ATE GV R + GETRAPTR+EEAWRFTDLSR+Y R+P K PAVLQPAQV  +K K++EHTLEVCEGR +VFVDGV RPE S    V  LKEEG +EGW+ GSIF+F+ EEQEEL RE+EW+PEVG+RHTLA+GSLPF  LNQACVKDAACLVV ERGEM+APVQF+F+STS++GEGG EG K+ RVSHPRL V+A+KRSAGKFVQSY+DIG G  LANACTTVRVDRRAEVQHLHANE+G +G +FDAVSVTTKKLSAY+NVF+NVGG++GR+N QAT+NGTEGRVDTEG+T++GEEQELDIHSYIHH RK G+SNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGI RREARQVLMMGFAAQVYNQ+PCE+M+KRL +RLY+VCP+VG+A+ YEYLS+
Sbjct:   11 RRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTS--FEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELS---HVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 573          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: CBN77201.1 (FeS assembly protein SufD [Ectocarpus siliculosus])

HSP 1 Score: 225.3 bits (573), Expect = 4.700e-55
Identity = 154/433 (35.57%), Postives = 214/433 (49.42%), Query Frame = 0
Query:  103 RDWFNSVLSSREPNPLFHAATELG-VGRLVDGETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATM--NGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGF 533
            R WF+++     P P   +  EL   G     E   PTRK+E +R+TDL  +Y      A      A+ A     +K H LE  +G+ +VFV+GVF  E S   ++ G+      EG   G I    G   ++    + + PE         GSL F SLNQAC  DA  ++V +   +  P+Q +F S   EGE G        VSHPRLVV A   S     QSY+  G GV LAN  T V V  RA V H +A EM    +L D VSV     S Y    +  G    R N Q  +   G+   + T  LT + + Q  D+HS I H  +       Q N+VS  + CVFKGR+ ++  A+   A+QL R+++++D   V  MP++E+ + DV CTHGAT+ D+++ E FYL SRGI +      + MGF
Sbjct:  119 RMWFDAIREGAVPRP--DSLVELSKAGEAELAELALPTRKQEPYRYTDLESLYRTDFTSAAPTTTAAETA---AAIKPHLLEASQGQQMVFVNGVFSDELSDVSALGGV------EGLVAGHIGAIEGAPLDQAKEMLSYLPEKDADFRTTQGSLAFASLNQACFADAGVIMVADGVTVEKPIQVIFFS---EGEEG------PTVSHPRLVVKAGADSHVTLTQSYLSRG-GVCLANGFTRVLVGDRATVTHDYAEEMSASDRLVDTVSVDQTTNSTYSVNQVLSGAFDARANFQIDLLETGSHCNIFTAALTTNNQRQ--DVHSTIRHKAEGTTCLQEQRNVVSDTADCVFKGRIVIDQVAQKTDANQLCRTLLVSDKARVTVMPSMEIIANDVKCTHGATICDLEDEELFYLMSRGISK------IQMGF 522          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: WP_011464156.1 (Fe-S cluster assembly protein SufD [Rhodoferax ferrireducens] >ABD69588.1 Iron-regulated ABC transporter permease protein SufD [Rhodoferax ferrireducens T118])

HSP 1 Score: 201.8 bits (512), Expect = 5.600e-48
Identity = 133/425 (31.29%), Postives = 201/425 (47.29%), Query Frame = 0
Query:  133 GETRAPTRKEEAWRFTDLSRV--YSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSDRLYE 556
            G    P+  +EAWRFT L+     S  P + P  L P  +  +      H  EV     LVFVDGV  P+ S       LK +    G  VG++      +   +       P +G    LA     F +LN A ++DAA LVV     +AAPV  L+IST  +             SHPRL+++A   S    ++ YV +  G    NA   V +   A+V H+       +     + +V+    S Y +  I +GG + R++L+   +        +GL + G +Q  D H++I H +  G S      IV G +H VF G++ + P A+   + Q  R+++L+    VD  P LE+ + DV CTHGATV  +D +E FYLQSRG+    AR +L   F A+V N++P   +R++L   + E
Sbjct:   48 GALTLPSTHDEAWRFTPLATFARQSFHPLRTPTALLPGDIKHL------HIEEVT--TRLVFVDGVHAPQLS------SLKPDA---GLAVGTLASMLARQASSI------EPHLGQH--LAFHDALFAALNTAFLQDAAVLVVPRETTLAAPVHVLYISTQPD-----------VASHPRLLLVAGAGSKATLIEDYVALHPGTYFTNAVAEVALGANAQVSHVRIQRESQQAFHMASCAVSLGAASRYHSASITLGGQISRLDLKVLQSADAAECALDGLALIGGQQLADTHTFIDHAKPHGVSRQLHKCIVGGAAHAVFNGQVMVRPGAQKTDSAQSSRNLLLSGKAQVDTQPQLEIFADDVKCTHGATVGQLDSDEVFYLQSRGLSEAVARNLLTYAFGAEVINRIPVASLRRQLEQTVLE 436          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: XP_001712249.1 (sufD [Hemiselmis andersenii] >ABW97924.1 sufD [Hemiselmis andersenii])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-47
Identity = 129/448 (28.79%), Postives = 229/448 (51.12%), Query Frame = 0
Query:  104 DWFNSVLSSREPNPLFHAATELGVGRLVDGETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSD 552
            +W NS+L   +    F+      +G  +   T  P++K+E+WRFT L R++  K   + + +         + VK+  LE  + R  VF++GVF P    A      +E    + + +G   D   E++ + +R++    E G+      G  P   LN A + + A L +    ++  P+Q LF S++ E              + +L+++ +K S  K +Q +V   E     N+ TT+ VD  A++     N++  K   F+++    +K S++  +  + GG + RI+L   +NG     + EG+TV    Q  DIHS I H     KS+  Q N++S   H +F G++++   A    ++QL +S++L+ +  VD+MP LE+ + DV CTHG+TV+D+D+ + FY +SRGI   +AR +L +GF  ++  ++P E + + LS+
Sbjct:   49 EWINSILFQEKQKSSFNINQLRKIGNNILKNTNFPSKKDESWRFTKLDRLFGMKFANSDSEVN-------ADFVKKFFLENSQARC-VFLNGVFFPSLFQA------REN--TDSYFLGRFSDL-NEKERKKIRDLAGKGESGIN----GGFFPI--LNLANLDEIAVLYIKADSKIKDPIQILFSSSTNE---------TPICINQKLIIVCEKNSKAKIIQHHVGSNESEFFDNSTTTILVDEEAQIDFFLINQVTEKASNFNSIHADLRKGSSFNFLSASFGGFLSRISLGIDLNGINASCNVEGVTVVKNSQISDIHSRISHNYPLCKSSQLQKNLISDKGHAIFAGKVQVHNGAYETESNQLCKSLLLSQTSKVDSMPILEINNEDVKCTHGSTVSDLDQEQLFYFKSRGIPIEKARFLLTIGFIKEIIEKLPKE-LNENLSE 463          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: WP_090666866.1 (Fe-S cluster assembly protein SufD [Nitrosomonas nitrosa] >SFM08778.1 Iron-regulated ABC transporter permease protein SufD [Nitrosomonas nitrosa])

HSP 1 Score: 197.2 bits (500), Expect = 1.400e-46
Identity = 125/417 (29.98%), Postives = 203/417 (48.68%), Query Frame = 0
Query:  133 GETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRL 550
            G  R PT  +E WRFTD+S + +R P   PA    A+++L      E          LVFVDG F PE S  G   G+          VGS+        E++  ++    E   R+ +      F +LN A ++D+AC++V +     AP+  LFI+            ++A  S+PR +VIA+  S  + ++ Y+   +   + N    + +   A V+H+       +       +V+    S Y ++ I +G  + R NL   +NG       +GL +  ++Q  D H++I H++  GKS      IV G +H VF G++ + P A+   + QL R+++LT+   VD  P LE+ + DV C HGATV  +D+ E FYLQSRG+    AR +L   F  +V +++    ++K+L
Sbjct:   40 GTLRMPTTGDEEWRFTDISPL-NRLP--YPAAYPTAELSL---SAGEPYYLAETAHRLVFVDGQFAPELSSIGDTTGI---------VVGSLSSLMATHGEKIAHKLGNLAE--YRNDI------FTALNTAFLRDSACIIVPQHVSETAPIHLLFIA-----------NQKAVTSYPRCLVIAESGSKVRILEDYIGTEKDAYVTNTVVEMSLGSNAHVEHIRVQRDNQQAFHIGNCTVSLAPASQYHSISITLGAFISRYNLNILLNGEGAECTADGLALISDQQLADTHTFIDHVKPHGKSRQLHKCIVDGMAHGVFNGKIMVRPHAQQTDSSQLSRNLLLTNKACVDTKPQLEIFANDVKCAHGATVGQLDKEEVFYLQSRGLSDLAARNLLTYAFGGEVIDRISIPSLKKQL 422          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: PIY29323.1 (Fe-S cluster assembly protein SufD [Comamonadaceae bacterium CG_4_10_14_3_um_filter_60_42])

HSP 1 Score: 196.8 bits (499), Expect = 1.800e-46
Identity = 130/420 (30.95%), Postives = 203/420 (48.33%), Query Frame = 0
Query:  138 PTRKEEAWRFTDLSRV--YSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSDRLYE 556
            P+  +EAWRFT L+ +   S    + P+ LQP  +A +   + E T        LVFVDGV  P+ S   SV G        G  +G++ D    +   L  E         + TL      F ++N A ++DAA L+V     +AAPV  LFIST TE             SHPRL+++A   S    ++ YV + +G    NA   + +   A++ H+       +     + +V+    S Y +V + +G  + R++L+        +   +GL +   EQ  D HS+I H +  G S      IV G SH VF G++ + P A+   + Q  R+++L+    +D  P LE+ + DV CTHGATV  +D +E FYLQSRG+    AR +L   F A++  ++P   +R++L   + E
Sbjct:   59 PSTHDEAWRFTPLAALAHQSFHVVRTPSELQPDDIAHL--SIAEATTR------LVFVDGVVAPQLS---SVSG------ESGLVIGTLADLLSGKASGL--ETHLGQHANFQDTL------FTAVNTAFLQDAAVLMVPPDTALAAPVHLLFISTQTE-----------VASHPRLLLVAGAGSKATVIEDYVALHDGAYFTNAVAEMVLQPNAQLTHVRLQRESSQAFHMASCAVSLGAASHYHSVNLALGAHISRLDLKVVQTAEGTQCTLDGLALINGEQLADTHSFIDHAKPHGTSRQLHKCIVGGSSHAVFNGQVMVRPGAQQTDSAQSSRNLLLSKKAQIDTQPQLEIFADDVKCTHGATVGQLDSDEVFYLQSRGLSEHVARNLLTYAFGAEIIERIPVASLRQQLEQTVLE 442          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: WP_107783883.1 (Fe-S cluster assembly protein SufD [Nitrosomonas nitrosa] >PTM68770.1 iron-regulated ABC transporter permease protein SufD [Nitrosomonas nitrosa])

HSP 1 Score: 196.8 bits (499), Expect = 1.800e-46
Identity = 125/417 (29.98%), Postives = 203/417 (48.68%), Query Frame = 0
Query:  133 GETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRL 550
            G  R PT  +E WRFTD+S + +R P   PA    A+++L      E          LVFVDG F PE S  G   G+          VGS+        E++  ++    E   R+ +      F +LN A ++D+AC++V +     AP+  LFI+            ++A  S+PR +VIA+  S  + ++ Y+   +   + N    + +   A V+H+       +       +V+    S Y ++ I +G  + R NL   +NG       +GL +  ++Q  D H++I H++  GKS      IV G +H VF G++ + P A+   + QL R+++LT+   VD  P LE+ + DV C HGATV  +D+ E FYLQSRG+    AR +L   F  +V +++    ++K+L
Sbjct:   40 GTLRMPTTGDEEWRFTDISPL-NRLP--YPAAYPTAELSL---SAGEPYYLAETAHRLVFVDGQFAPELSSIGDTTGI---------VVGSLSSLMATHGEKIAHKLGNLAE--YRNDI------FTALNTAFLRDSACIIVPQHVSETAPIHLLFIA-----------NQKAVTSYPRCLVIAESGSKVRILEDYIGTEKDAYVTNTVVEMSLGSNAHVEHIRVQRDNQQAFHIGNCTVSLAPASQYHSISITLGAFISRYNLNILLNGEGAECTADGLALISDQQLADTHTFIDHVKPHGKSRQLHKCIVDGMAHGVFNGKIMVRPHAQQTDSSQLSRNLLLTNKARVDTKPQLEIFANDVKCAHGATVGQLDKEEIFYLQSRGLSDLAARNLLTYAFGGEVIDRISIPSLKKQL 422          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: WP_107789961.1 (Fe-S cluster assembly protein SufD [Nitrosomonas nitrosa] >PTQ96172.1 iron-regulated ABC transporter permease protein SufD [Nitrosomonas nitrosa])

HSP 1 Score: 196.8 bits (499), Expect = 1.800e-46
Identity = 125/417 (29.98%), Postives = 203/417 (48.68%), Query Frame = 0
Query:  133 GETRAPTRKEEAWRFTDLSRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRL 550
            G  R PT  +E WRFTD+S + +R P   PA    A+++L      E          LVFVDG F PE S  G   G+          VGS+        E++  ++    E   R+ +      F +LN A ++D+AC++V +     AP+  LFI+            ++A  S+PR +VIA+  S  + ++ Y+   +   + N    + +   A V+H+       +       +V+    S Y ++ I +G  + R NL   +NG       +GL +  ++Q  D H++I H++  GKS      IV G +H VF G++ + P A+   + QL R+++LT+   VD  P LE+ + DV C HGATV  +D+ E FYLQSRG+    AR +L   F  +V +++    ++K+L
Sbjct:   40 GTLRMPTTGDEEWRFTDISPL-NRLP--YPAAYPTAELSL---SAGEPYYLAETAHRLVFVDGQFAPELSSIGDTTGI---------VVGSLSSLMATHGEKIAHKLGNLAE--YRNDI------FTALNTAFLRDSACIIVPQHVSETAPIHLLFIA-----------NQKAVTSYPRCLVIAESGSKVRILEDYIGTEKDAYVTNTVVEMSLGSNAHVEHIRVQRDNQQAFHIGNCTVSLAPASQYHSISITLGAFISRYNLNILLNGEGAECTADGLALISDQQLADTHTFIDHVKPHGKSRQLHKCIVDGMAHGVFNGKIMVRPHAQQTDSSQLSRNLLLTNKARVDTKPQLEIFANDVKCAHGATVGQLDKEEIFYLQSRGLSDLAARNLLTYAFGGEVIDRISIPSLKKQL 422          
BLAST of NO02G05700 vs. NCBI_GenBank
Match: WP_026778676.1 (Fe-S cluster assembly protein SufD [Polaromonas sp. EUR3 1.2.1])

HSP 1 Score: 196.1 bits (497), Expect = 3.100e-46
Identity = 137/465 (29.46%), Postives = 212/465 (45.59%), Query Frame = 0
Query:  102 ARDWFNSVLSSREPNPLFHAATEL---------GVGRLVDGETRAPTRKEEAWRFTDLSRVYSRK--PGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPEFSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHTLAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKEGGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRAEVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATMNGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLSDRLYE 556
            AR   +S+L+S  P P   A T L          + R+  G    PT  +EAWRFT++S +  +   P + P  LQ   +  +   ++E T        LVFVDGV  P+ S   +  G+    +    K              L+ E            L      F +LN A + DAA ++V     +A PV  LF+ST  +             SHPR++++A+  SA   ++ Y  + +G    NA   V +   A+V+H+      G+     + +V+    S Y +V I +G  + R+ L             +GL + G EQ  D H++I H +  G S      IV G +H VF G++ + P A+   + Q  R+++LT    VD  P LE+ + DV CTHGATV  +D  E FYLQSRG+    AR +L   F A+V +++P   +R++L   + E
Sbjct:    8 ARGVLDSLLASLAPAPGSLAPTTLEWLNALRAEALERV--GALTLPTPHDEAWRFTNISALTRKSFHPLRTPTALQAGDIGHL--HIEEATTR------LVFVDGVHAPQLSSITAEAGVVVSTLSAAVKT-----------HALVIEQHLGQHAPFHDAL------FPALNTAFLHDAAVVIVPRETLIATPVHLLFLSTQPD-----------LASHPRVLLVAESGSAVTVIEDYAALHDGAYFTNALAEVVLAANAQVEHIRVQRESGQAFHMASCAVSLGAASRYHSVSIALGAQISRLALSVVQTADAAECSLDGLALIGAEQLADTHTFIDHAKPHGVSRQLHKCIVGGAAHAVFNGKVMVRPGAQKTDSAQSSRNLLLTGKALVDTQPQLEIFADDVKCTHGATVGQLDSEEVFYLQSRGLPETVARNLLTYAFGAEVIDRIPVASLRRQLEQTVLE 434          
The following BLAST results are available for this feature:
BLAST of NO02G05700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855638.11.900e-24574.96assembly protein [Nannochloropsis gaditana CCMP526... [more]
EWM30100.12.100e-24474.12assembly protein [Nannochloropsis gaditana][more]
CBN77201.14.700e-5535.57FeS assembly protein SufD [Ectocarpus siliculosus][more]
WP_011464156.15.600e-4831.29Fe-S cluster assembly protein SufD [Rhodoferax fer... [more]
XP_001712249.12.800e-4728.79sufD [Hemiselmis andersenii] >ABW97924.1 sufD [Hem... [more]
WP_090666866.11.400e-4629.98Fe-S cluster assembly protein SufD [Nitrosomonas n... [more]
PIY29323.11.800e-4630.95Fe-S cluster assembly protein SufD [Comamonadaceae... [more]
WP_107783883.11.800e-4629.98Fe-S cluster assembly protein SufD [Nitrosomonas n... [more]
WP_107789961.11.800e-4629.98Fe-S cluster assembly protein SufD [Nitrosomonas n... [more]
WP_026778676.13.100e-4629.46Fe-S cluster assembly protein SufD [Polaromonas sp... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007268NSK007268Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05700.1NO02G05700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575559gene_1158Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100258g3gene549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05700.1NO02G05700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05700 ID=NO02G05700|Name=NO02G05700|organism=Nannochloropsis oceanica|type=gene|length=2054bp
ATACCACAGCGCTGCTATGAACATGCAGCATCGGCCGCAACGGCGGCAGT
GGGGCGCGTCCTACCTCTTTGCAACCGCAGCTCTACTGGGGACGGTCCAA
GCGTTCCTCCTCCCCTTCAACACCCCCGCCCAACCCCCACCCAGCCTTGC
CAAAGACAGTGGACTTTGGTGGCAGCAACAGCGACAACAAGGAAGGgtac
gtagacagagaagaaagaggacgaaggaggcggacgaggaggggaaggct
gtatcattgcctcatttatcagtaaagtatctcgtttgcgtctcgtcgcc
ccccgccgtctttcgacgagtctggcccactaaaccatgcgtgtacccct
gacgagtcagcacctgttggttgaagcccttttcatgtaatcgagtctgc
cttttcattcccaacatctccacctcctcctcattcttttcctcctcacc
ctccttcccttcccttcccccccttcctccaaaaccagAGCACCAAGCTC
CAAGCTGCCCTCGCCGAGCGCCCACGTTCCCCCTCTGTCACCCTAGATGA
TTCCACAGCCTTAATCGAGGCTGAGACTGTGGCCTTGAAGCCCCCTTCTC
GGGAGGAGCAAGCCAGGGACTGGTTCAACTCGGTCCTGTCCTCGCGGGAA
CCCAACCCTCTCTTCCATGCAGCGACAGAGCTGGGGGTAGGACGGTTGGT
GGATGGCGAGACACGGGCTCCCACGAGGAAGGAGGAGGCGTGGCGCTTCA
CGGACCTGTCGCGTGTGTACTCGCGGAAGCCGGGGAAAGCCCCTGCAGTG
CTGCAGCCGGCGCAGGTAGCCCTGATCAAGGAGAAAGTGAAGGAGCACAC
TCTGGAGGTGTGTGAAGGGCGAGCACTTGTTTTTGTGGATGGGGTCTTCC
GACCGGAGTTTTCGCCGGCGGGTTCGGTAGAGGGCCTGAAGGAGGAGGGG
GTTAGGGAGGGGTGGAAGGTTGGGAGTATTTTTGATTTTACGGGCGAGGA
GCAAGAGGAGCTGCTGCGGGAGATCGAGTGGTCGCCGGAGGTGGGGATGA
GGCATACTTTGGCGGCTGGCTCATTGCCTTTTTGTTCCCTGAACCAAGCG
TGCGTGAAGGATGCTGCCTGCCTGGTGGTGGGTGAAAGGGGGGAGATGGC
GGCACCAGTGCAATTTCTGTTCATCTCGACAAGCACGGAAGGGGAAGGCG
GGAAGGAGGGCGGGAAGGAGGCGAGGGTATCACACCCGAGGTTGGTGGTA
ATTGCCAAGAAACGCTCGGCGGGGAAGTTCGTGCAGAGCTATGTGGATAT
CGGGGAAGGAGTGGGCCTTGCTAATGCCTGTACGACCGTCAGAGTTGACC
GGCGGGCGGAGGTACAGCACCTCCACGCGAACGAGATGGGGGGCAAAGGG
CAGCTGTTTGACGCGGTGTCGGTGACAACGAAGAAGTTGAGTGCGTACAG
GAATGTCTTTATCAACGTAGGGGGTGACATGGGTAGGATTAACCTGCAGG
CCACTATGAACGGGACGGAGGGGCGGGTGGATACGGAGGGTCTGACCGTT
AGCGGGGAGGAGCAGGAATTGGACATCCATTCTTACATCCACCACCTGCG
TAAGGATGGGAAGAGCAACATGTATCAGTGCAACATTGTGAGTGGAGATA
GCCACTGTGTATTTAAGGGTCGGATGAAGCTGGAGCCGAGGGCGAGGGGC
GTAACGGCCGACCAGTTAATTCGGTCGATTATGCTAACGGATTCGTGCAC
CGTTGACGCGATGCCGACCTTAGAGGTGTGCTCGGGGGATGTGGACTGCA
CGCATGGAGCGACTGTGGCGGACATTGACGAGAACGAGGCGTTTTACTTG
CAGTCGCGGGGCATTGGACGAAGGGAAGCACGGCAAGTCTTAATGATGGG
GTTTGCGGCGCAGGTCTACAACCAGGTGCCCTGCGAACGGATGAGGAAGA
GGTTGAGCGATCGGTTGTATGAAGTGTGCCCGGAGGTGGGGATGGCAGAG
TCGTACGAGTACTTGAGTATTTAAGGAGGGAGGGAGGGAGGGAAGGAGGG
AGGG
back to top

protein sequence of NO02G05700.1

>NO02G05700.1-protein ID=NO02G05700.1-protein|Name=NO02G05700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MNMQHRPQRRQWGASYLFATAALLGTVQAFLLPFNTPAQPPPSLAKDSGL
WWQQQRQQGRSTKLQAALAERPRSPSVTLDDSTALIEAETVALKPPSREE
QARDWFNSVLSSREPNPLFHAATELGVGRLVDGETRAPTRKEEAWRFTDL
SRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFRPE
FSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHT
LAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKE
GGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRA
EVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATM
NGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHC
VFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHG
ATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLS
DRLYEVCPEVGMAESYEYLSI*
back to top
Synonyms
Publications