NO02G05490, NO02G05490 (gene) Nannochloropsis oceanica

Overview
NameNO02G05490
Unique NameNO02G05490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2797
Alignment locationchr2:1461011..1463807 +

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Properties
Property NameValue
Description50s ribosomal protein l28
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1461011..1463807 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR034704L28p-like
IPR026569Ribo_L28/L24
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO02G05490 vs. NCBI_GenBank
Match: EWM30153.1 (50s ribosomal protein l28 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 1.600e-46
Identity = 102/133 (76.69%), Postives = 111/133 (83.46%), Query Frame = 0
Query:    1 MKAFAFLVALLSLAMAQAFFGPAALKAPRVNTLSSLTTTTSLARKSVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQFQAQH 134
            MKAF+FL+  LS+A+AQAF  PA  + PR     S  +  + ARKS+ VMRERKCELLGKRANRQCR VSFSHIR KK+Q VNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAF KFEVDLHQFQAQH
Sbjct:    1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALS-PSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: CBJ48869.1 (50S ribosomal protein L28 [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 9.200e-18
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 0
Query:    1 MKAFAF--LVALLSLAMAQAF-FGPAALKAPRVNTLSSLTTTTSLARKSVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQFQA 132
            MK FA    +A+L   +A  F   P+A     V + SS T+ TS  +     MR R C+LLGK+ NR+ R+V+FSH R  K Q +NL  ++++W EG +FVRLRLSTK  +T+ KYGLNKA KKF +DL +F A
Sbjct:    1 MKLFAVAGAMAVLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQ-----MRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: XP_009041830.1 (hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens] >EGB03501.1 hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens])

HSP 1 Score: 94.4 bits (233), Expect = 2.900e-16
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 0
Query:   50 MRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130
            M+ R C++ GKR N +   V+FSH R  K Q VNL ++R+WW+EG+KFV++R+STK  +T+ KYGL K  KK++VDL++F
Sbjct:   39 MKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEGNKFVQMRVSTKALKTIAKYGLGKTAKKYDVDLNEF 118          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: XP_013246528.1 (50S ribosomal protein L28, putative [Eimeria acervulina] >CDI84524.1 50S ribosomal protein L28, putative [Eimeria acervulina])

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-14
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   49 VMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDL 127
            ++  R+C LLGK  NR+ R +S S +RT + Q VNL  KR+WWAEG  +VRLRLS KG +T+KKYGL +A  KF+++L
Sbjct:  162 ILPARRCMLLGKMDNRKARSISHSGVRTHRVQRVNLAWKRLWWAEGGHYVRLRLSMKGLKTIKKYGLQRAADKFKLNL 239          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: GAX12270.1 (large subunit ribosomal protein L28 [Fistulifera solaris])

HSP 1 Score: 87.4 bits (215), Expect = 3.600e-14
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0
Query:   50 MRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFKKFEVDLHQF 130
            MR R C+LLGK  NRQ R+V+FSH R KK Q VNL  KR +  E ++ VRLRLSTKG +TV KYG ++KA KKFE+DL +F
Sbjct:    3 MRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 83          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: CDJ52719.1 (50S ribosomal protein L28, putative [Eimeria brunetti])

HSP 1 Score: 86.7 bits (213), Expect = 6.100e-14
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   49 VMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLH 128
            V+  R+C LLGK  NR+ R +S S +RT + Q +NL  KR+WWAE   +VRLRLS KG +T+KKYGL +A  KF+++L+
Sbjct:  105 VLPARRCMLLGKMDNRKARSISHSGVRTHRVQKLNLRWKRLWWAEAGHYVRLRLSMKGLKTIKKYGLQRAANKFKLNLN 183          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: OUW04783.1 (50S ribosomal protein L28 [Synechococcus sp. TMED155])

HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130
            R C+L GKRAN     VS SH+RTKK Q VNL E+R+WWAEG+++VRLR+ST   RT++K GL    K+  VDL +F
Sbjct:    3 RVCQLTGKRANNG-MAVSHSHVRTKKLQXVNLQERRLWWAEGNRWVRLRVSTSAXRTIQKKGLGAYAKQLGVDLSKF 78          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: GAX21124.1 (large subunit ribosomal protein L28 [Fistulifera solaris])

HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   23 AALKAPRVNTLSSLTTTTSLARK----SVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFKKFEVDLHQF 130
            AAL   +V + +  T      +K    S   MR R C+LLGK  NRQ R+V+FSH R KK Q VNL  KR +  E ++ VRLRLSTKG +TV KYG ++KA KKFE+DL +F
Sbjct:   11 AALVIIQVQSFTGYTPVFGAGQKTQNGSNMQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: OUT69035.1 (50S ribosomal protein L28 [Synechococcus sp. TMED19] >OUT72034.1 50S ribosomal protein L28 [Synechococcus sp. TMED19])

HSP 1 Score: 84.0 bits (206), Expect = 4.000e-13
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130
            R C+L GKRAN     VS SH+RTKK Q VNL E+R+WWAEG ++VRLR+ST   RT++K GL    K+  VDL +F
Sbjct:    3 RVCQLTGKRANNG-MAVSHSHVRTKKLQQVNLQERRLWWAEGKRWVRLRVSTSALRTIQKKGLGAYAKQLGVDLSKF 78          
BLAST of NO02G05490 vs. NCBI_GenBank
Match: WP_006909349.1 (50S ribosomal protein L28 [Cyanobium sp. PCC 7001] >EDY37447.1 ribosomal protein L28 [Cyanobium sp. PCC 7001])

HSP 1 Score: 82.8 bits (203), Expect = 8.900e-13
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDL 127
            R C+L GKRAN     VS SH+RTKK Q VNL E+R+WWAEG++FVRLR+ST+  RT++K GL    K+  V+L
Sbjct:    3 RVCQLTGKRANNG-MAVSHSHVRTKKLQQVNLQERRLWWAEGNRFVRLRVSTRALRTIQKKGLGAYAKELGVNL 75          
The following BLAST results are available for this feature:
BLAST of NO02G05490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30153.11.600e-4676.6950s ribosomal protein l28 [Nannochloropsis gaditan... [more]
CBJ48869.19.200e-1847.0150S ribosomal protein L28 [Ectocarpus siliculosus][more]
XP_009041830.12.900e-1651.25hypothetical protein AURANDRAFT_39327, partial [Au... [more]
XP_013246528.11.600e-1453.8550S ribosomal protein L28, putative [Eimeria acerv... [more]
GAX12270.13.600e-1460.49large subunit ribosomal protein L28 [Fistulifera s... [more]
CDJ52719.16.100e-1451.9050S ribosomal protein L28, putative [Eimeria brune... [more]
OUW04783.12.300e-1355.8450S ribosomal protein L28 [Synechococcus sp. TMED1... [more]
GAX21124.12.300e-1350.00large subunit ribosomal protein L28 [Fistulifera s... [more]
OUT69035.14.000e-1355.8450S ribosomal protein L28 [Synechococcus sp. TMED1... [more]
WP_006909349.18.900e-1356.7650S ribosomal protein L28 [Cyanobium sp. PCC 7001]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007207NSK007207Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05490.1NO02G05490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575479gene_1136Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g6gene501Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05490.1NO02G05490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05490 ID=NO02G05490|Name=NO02G05490|organism=Nannochloropsis oceanica|type=gene|length=2797bp
CGAGTAGCTTGTTGTTTGGCTGTGTTTAGTGGGGGGATGCGGAGGGATGC
AGGGGGAGACTGGTGTGTTAGTGTCGAGAAAAAAAGAGTTGGGAATGCTC
CGTCAATGGATGTTGATAGGGAAGGGGGCGCGGGCGAGGCTGACTATTCC
AGTGGTGTGCTTGCTGAGGACGCACGTGCCATCGTAGGCACTCTGTACAT
TCCCCCGCGCGTCCCGGGCCAGGGCTTGATAAAACCACGAGCTAAATGCA
GTCTTTCAGTTTTGCGGGATGTGTGTGACAAGGGACTGTACGACGTCTCG
AAATGTACTGCTCAAAAGTCCTTGGCAAACAGCCGACCTCGATAACACCA
CCCGTGTTGCTATTCCACAGAAGCGACGAATGCTCTTCGATGATCCCCGT
CCTTATTTGTTTTTTTTCCTTGGGTCATCCGTCTCGTCTTGTTGTCCTGC
TGAGACATCTTTCTTTTTCTTAAACAACTACATCCAGTAAACACCAATCG
ATTCACCATCACTCATTTGCCAGAGCGTGGGCGAAGATGGGTAGATAGAT
GGTCAGGGGTACCGTCGTATCTTCGGGCTCCGACCGGGTGTAGATGAAGG
TCAAAAGCATCAATTTTGACAACAGCAATAACAATGATATGTTGTAAAAC
AACCAACTTTATGGTTGAAACTGTGAGCGAAAAGGGAGCAGTGTTGAAAT
AGAACTTTTTGAAAGTCTATTATGTGCTCGGTTGTGGCAAACCGGTGCTA
ATTGTTCAATACTTGCGCATGCCTCTTGAAGAAAGGGGCGTCCTTCACAT
CTCAGAGACCTCCATCGATTATGTGTTGGATATAGCCAGCACCGCCATTT
GCCATTCCTATCAACTCATGTAAACTGATCCAGTGATGTGTGCTTTTATT
GAGAGGATGATGCTGCTTGTATATGACAAGTTTGGGTGGGTGCGTGGCTA
GCGCCTAGAACAACGAGCAAGCCCGTGATCGAGGGCAACCAGGGACTCGC
TTTTACGTTCGCTAGGACAGATTGAGAATAGAGTTGTTGGGGTGGGCAGA
GACGGAGTGGGTGAGTGGCGTGTTGCTGACCTAGCGGCAAGTAGCCACAC
AAGGTGTAGACTTTATCTCACGCGGAGTTGTTGGACGGGTTCAAGAGCAC
TTTCTGGCCATGCCGAGGCAGCGACTCCTCTAATTGACAATGCACCGATC
TGCCGCGGCTGTGGATGGCTCTGATTGTGGCTTGGTTATCCATATCAGGG
AGTTAGTTGCCTTTGCCTTGCCTAGCCCTTTCACCTCCGATTCTCGTTGT
ACCAACACGTACCAATCACCGCTGACGCACCTCTCTACCCACTACAAGTC
ACACAGGCAGACACAACCATGAAGGCCTTCGCGTTCTTGGTTGCGCTATT
GAGCCTGGCTATGGCCCAAGCATTTTTTGGCCCCGCTGCCCTCAAGGCGC
CCCGTGTGgtaagtgacgatagagagacggatagagacgatgaatgagaa
gaagcgcgacgcaaaaaagacggtttgtcgtaggcttaatatgtgcatgt
ggctccgatgggagcaccggtgccggggaaggatgtgtcacgccattctt
ctgcagcagtaagctatgcgggatatcaggcgctatccagtgaattaggg
atgagttcaccgcgctcctagtattcttcttacgattgcccttctctttt
tgctaagcctgtatgtctgcctgtcagctgcgttcgctcggtgacaagac
actgacgccgcgcggctctcctacctacccctctgccctctatctctatt
tatttctccttgtgcaatcaagtactttctcttccccttattcattttac
aaccctcctcatccctccttctcctcccatcttccactctccctcctccc
cccaatcacagAACACCCTCTCCAGCCTCACCACCACTACCTCCCTCGCC
CGGAAGTCTGTCACCGTCATGCGCGAGCGCAAATGTGAACTCCTGGGTAA
GCGCGCCAACCGACAATGCCGCCTTGTGTCTTTCTCCCACATCCGCACCA
AAAAGAGCCAGGCTGTAAACCTGCACGAAAAGCGAGTGTGGTGGGCGGAG
GGAAGCAAGTTTGTCAGACTTCGCCTGTCGACCAAGGGATGGAGGACGGT
GAAGAAGTACGGACTGAACAAAGCTTTCAAGAAGTTCGAGGTGGATCTAC
ACCAGTTCCAGGCTCAGCACTAAAGAGGAGGAAGAAGGAAGAAGGGATGG
GACTGAGGGAGGGAAGAACTCATATAGATACTCGCATCGGAGGGGGAGAG
GGAAGAGGGGGAAGACGTGGTTATTCAAGGCCTGCTCTCCACTCTTTCCT
GTCTCCAGGGTCACAAATATATATCACGCTACAGCAATTCTCACAGAGCT
CAAGGCGACCTTGATGGCATGGACTGGTCGGACAAAGGAGGGAGGGGTGT
AGAGAGATAGAAGGGCTGTAGGGATGATGTGAAGCGCTTGTCTTTCACTC
ATTCGTACGAGAGTGAGAGAAAAAGGCATTTGTCCGTTGCCGTCCTTCTA
ATTTTTATCCTCCTTTTCTTGTGCCCATTCTTTTCTCCTTGTTTCTCTGT
CAAGTGCTGGCGTGCATGTAAGTGTGTGAGGGTTAGCGTGGGGAAGACGG
GATGCCCTTCTCCCCATATGCCAAGCACTCACACAAGGAAGAGCAGCAGG
GGCCATGACAATAATCCAGAAGAAAATGAACGCCAGGCCGCGGCGGACCT
GTGGAAACAAGAAGAAGAAAAACTCTTTTCGTGGAGTCAGCAGTCAT
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protein sequence of NO02G05490.1

>NO02G05490.1-protein ID=NO02G05490.1-protein|Name=NO02G05490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MKAFAFLVALLSLAMAQAFFGPAALKAPRVNTLSSLTTTTSLARKSVTVM
RERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRL
RLSTKGWRTVKKYGLNKAFKKFEVDLHQFQAQH*
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Synonyms
Publications