NO02G05480, NO02G05480 (gene) Nannochloropsis oceanica

Overview
NameNO02G05480
Unique NameNO02G05480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2412
Alignment locationchr2:1459969..1462380 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1459969..1462380 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05480 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 428.3 bits (1100), Expect = 1.900e-116
Identity = 214/301 (71.10%), Postives = 237/301 (78.74%), Query Frame = 0
Query:    1 MRPYRVLLSLAVLVPFLALPS----------------------GTKAAGATRGVTDGEPETAEAHCCGMKGLGGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDAPREAVYIVVTLTPEGASWEDRLAEDR 280
            M+ +R L+ LA LVPFLAL S                      G  +  ATRG TDGEP TAE HCCGMKGLGGA +EVMCHP+TVAMGK FTVNV +TSD+KRPVDVHVDVLNA TKAFYAGKWEEFDTQAG  SLTI+MP WGV EPFLWKVF+TPRGEPFPNMLAETGFVAHLADYVKNDC  FKSYGF+PPE+ +N KTVDFV L+ VPA L PG+ A V+VEYN+VGA KA +S +LMRKGPNT ISS  D A PGQN + L LPVP DAP+EAVYIVVTLTP+GASWEDRLAED+
Sbjct:   81 MQLHRTLIGLAALVPFLALTSAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPKEAVYIVVTLTPDGASWEDRLAEDQ 381          
BLAST of NO02G05480 vs. NCBI_GenBank
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05480 vs. NCBI_GenBank
Match: EWM25453.1 (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05480 vs. NCBI_GenBank
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-8
Identity = 52/173 (30.06%), Postives = 79/173 (45.66%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKT------VDFVILKHVPAELIPGTTATVEVEYNMV-GAKKASISASL 221
            + V+C P  V  G+ F VN+ FT    RP+D+    L+  TK +Y G       Q G  S    +    +T P  +K +++PRGE  PN +  T     L       C        NP    DN+ T       ++V L  VP  L PG  A + + YN+V  ++KA+ +A++
Sbjct:  147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPC--------NPD--PDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309          
The following BLAST results are available for this feature:
BLAST of NO02G05480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM30149.11.900e-11671.10hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
EWM25360.12.300e-2933.48hypothetical protein Naga_100005g21 [Nannochlorops... [more]
EWM25453.12.300e-2933.48hypothetical protein Naga_100005g20 [Nannochlorops... [more]
EWM24789.11.300e-830.06hypothetical protein Naga_100912g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05480.1NO02G05480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05480.1NO02G05480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05480 ID=NO02G05480|Name=NO02G05480|organism=Nannochloropsis oceanica|type=gene|length=2412bp
ATGGTTGTGTCTGCCTGTGTGACTTGTAGTGGGTAGAGAGGTGCGTCAGC
GGTGATTGGTACGTGTTGGTACAACGAGAATCGGAGGTGAAAGGGCTAGG
CAAGGCAAAGGCAACTAACTCCCTGATATGGATAACCAAGCCACAATCAG
AGCCATCCACAGCCGCGGCAGATCGGTGCATTGTCAATTAGAGGAGTCGC
TGCCTCGGCATGGCCAGAAAGTGCTCTTGAACCCGTCCAACAACTCCGCG
TGAGATAAAGTCTACACCTTGTGTGGCTACTTGCCGCTAGGTCAGCAACA
CGCCACTCACCCACTCCGTCTCTGCCCACCCCAACAACTCTATTCTCAAT
CTGTCCTAGCGAACGTAAAAGCGAGTCCCTGGTTGCCCTCGATCACGGGC
TTGCTCGTTGTTCTAGGCGCTAGCCACGCACCCACCCAAACTTGTCATAT
ACAAGCAGCATCATCCTCTCAATAAAAGCACACATCACTGGATCAGTTTA
CATGAGTTGATAGGAATGGCAAATGGCGGTGCTGGCTATATCCAACACAT
AATCGATGGAGGTCTCTGAGATGTGAAGGACGCCCCTTTCTTCAAGAGGC
ATGCGCAAGTATTGAACAATTAGCACCGGTTTGCCACAACCGAGCACATA
ATAGACTTTCAAAAAGTTCTATTTCAACACTGCTCCCTTTTCGCTCACAG
TTTCAACCATAAAGTTGGTTGTTTTACAACATATCATTGTTATTGCTGTT
GTCAAAATTGATGCTTTTGACCTTCATCTACACCCGGTCGGAGCCCGAAG
ATACGACGGTACCCCTGACCATCTATCTACCCATCTTCGCCCACGCTCTG
GCAAATGAGTGATGGTGAATCGATTGGTGTTTACTGGATGTAGTTGTTTA
AGAAAAAGAAAGATGTCTCAGCAGGACAACAAGACGAGACGGATGACCCA
AGGAAAAAAAACAAATAAGGACGGGGATCATCGAAGAGCATTCGTCGCTT
CTGTGGAATAGCAACACGGGTGGTGTTATCGAGGTCGGCTGTTTGCCAAG
GACTTTTGAGCAGTACATTTCGAGACGTCGTACAGTCCCTTGTCACACAC
ATCCCGCAAAACTGAAAGACTGCATTTAGCTCGTGGTTTTATCAAGCCCT
GGCCCGGGACGCGCGGGGGAATGTACAGAGTGCCTACGATGGCACGTGCG
TCCTCAGCAAGCACACCACTGGAATAGTCAGCCTCGCCCGCGCCCCCTTC
CCTATCAACATCCATTGACGGAGCATTCCCAACTCTTTTTTTCTCGACAC
TAACACACCAGTCTCCCCCTGCATCCCTCCGCATCCCCCCACTAAACACA
GCCAAACAACAAGCTACTCGACATCAGCTCCAAGCAAGTACCAAGAAGGA
ATCATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCCTTT
CTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTGTGA
CAGACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAAGGC
CTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGCGAT
GGGCAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGCGGC
CTGTGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTCTAC
GCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCTCAC
GATCAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGGTGT
TTGTGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACGGGC
TTTGTGGCACgtacgtagtaggagggaaggagggagggtgggaaaatgag
ggatgaggtagattgttctgttgtagatgcaccagatatccattcactga
ctcttgtccctcatctcgttctttcctcctcctgcagACCTTGCCGACTA
CGTGAAGAACGACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCCCG
AGATGAAGGATAACGACAAGACGGTCGATTTTGTCATCCTCAAACACGTC
CCCGCCGAGCTCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTACAA
CATGGTCGGCGCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAAGG
GGCCCAACACTCAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGCCAG
AACACGATGAAACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAGGC
TGTCTACATCGTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGATC
GCCTTGCGGAGGACCGAACCTATCAAACCAAGATGGCAGGGATGCGAATG
CGTCGGGAGTAA
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protein sequence of NO02G05480.1

>NO02G05480.1-protein ID=NO02G05480.1-protein|Name=NO02G05480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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Synonyms
Publications