NO02G05470, NO02G05470 (gene) Nannochloropsis oceanica

Overview
NameNO02G05470
Unique NameNO02G05470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2224
Alignment locationchr2:1456806..1459029 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1456806..1459029 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05470 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 428.3 bits (1100), Expect = 1.900e-116
Identity = 214/301 (71.10%), Postives = 237/301 (78.74%), Query Frame = 0
Query:    1 MRPYRVLLSLAVLVPFLALPS----------------------GTKAAGATRGVTDGEPETAEAHCCGMKGLGGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDAPREAVYIVVTLTPEGASWEDRLAEDR 280
            M+ +R L+ LA LVPFLAL S                      G  +  ATRG TDGEP TAE HCCGMKGLGGA +EVMCHP+TVAMGK FTVNV +TSD+KRPVDVHVDVLNA TKAFYAGKWEEFDTQAG  SLTI+MP WGV EPFLWKVF+TPRGEPFPNMLAETGFVAHLADYVKNDC  FKSYGF+PPE+ +N KTVDFV L+ VPA L PG+ A V+VEYN+VGA KA +S +LMRKGPNT ISS  D A PGQN + L LPVP DAP+EAVYIVVTLTP+GASWEDRLAED+
Sbjct:   81 MQLHRTLIGLAALVPFLALTSAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPKEAVYIVVTLTPDGASWEDRLAEDQ 381          
BLAST of NO02G05470 vs. NCBI_GenBank
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05470 vs. NCBI_GenBank
Match: EWM25453.1 (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05470 vs. NCBI_GenBank
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-8
Identity = 52/173 (30.06%), Postives = 79/173 (45.66%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKT------VDFVILKHVPAELIPGTTATVEVEYNMV-GAKKASISASL 221
            + V+C P  V  G+ F VN+ FT    RP+D+    L+  TK +Y G       Q G  S    +    +T P  +K +++PRGE  PN +  T     L       C        NP    DN+ T       ++V L  VP  L PG  A + + YN+V  ++KA+ +A++
Sbjct:  147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPC--------NPD--PDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309          
The following BLAST results are available for this feature:
BLAST of NO02G05470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM30149.11.900e-11671.10hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
EWM25360.12.300e-2933.48hypothetical protein Naga_100005g21 [Nannochlorops... [more]
EWM25453.12.300e-2933.48hypothetical protein Naga_100005g20 [Nannochlorops... [more]
EWM24789.11.300e-830.06hypothetical protein Naga_100912g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05470.1NO02G05470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05470.1NO02G05470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05470 ID=NO02G05470|Name=NO02G05470|organism=Nannochloropsis oceanica|type=gene|length=2224bp
GAGCATTCGTTGCTTCTGTGGAAGAGCAACTCGATGCTCGTTTCGAGGTC
GCCTGCTTGCCAAGGACGTTTGAAACAACACCTTTCGCGGCGTCGTAGTA
TAAACCCAACCACAGCCTTGTACACGGATGCGTTTTAAGCTGTGCCACAT
CCTGTGCATGTGTGCCTGATTCGCATAGATATCCATCTTTGTCCGGAACT
TGTTCGACGTCCCCTCGATTACACGAGCCGCCTGGAGGGATGCCTTGTCG
GGCTCGGTGGTTCCGTATTCTTTGCTGTGTTTATTCCATCGCTCAAAAAT
ATGTCCATGTCTTGCCCTGATTTGACGCTTTTCAAGCTAGGACGGTCCCT
GGCCCCATACATCCCGCAGGACGGCATCCCACCTTCTTCAAGTTGCTGTC
TTATTGTGCCGTGGCTATGGACGTGCGGGGCAATGCGGGGTCGGCAGAAA
AATAGCACGTCCCCACGATGGCACGTGCGTCCTCAGCAAGCGCACACCAC
TGGAATAGTCAGCCTCGCCCGCGCCCCCTTCCCTATCAACATCCATTGAC
GGAGCATTCCCAACTCTTTTTTTCTCGACACTAACACACCAGTCTCCCCC
TGCATCCCTCCGCATCCCCCCACTAAACACAGCCAAACAACAAGCTACTC
GACATCAGCTCCAAGCAAGTACCAAGAAGGAATCATGCGTCCTTACCGTG
TTCTTCTCAGCCTCGCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGC
ACTAAGGCTGCCGGCGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGAC
GGCCGAGGCGCACTGCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGG
AGGTCATGTGTCACCCTGACACAGTAGCGATGGGCAAGACCTTCACGGTG
AATGTGAACTTTACGAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGA
CGTGCTGAACGCGCAAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGT
TCGACACCCAGGCAGGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGG
GGTGTGACGGAGCCCTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGA
GCCTTTCCCGAACATGTTGGCGGAGACGGGCTTTGTGGCACgtacgtagt
aggaggaaaggagggagggtgggaaaatgagggatgaggtagattgttct
gttgtagatgcaccagatatccattcactgactcttgtccctcatctcgt
tctttcctcctcctgcagACCTTGCCGACTACGTGAAGAACGACTGCCAG
AGCTTCAAATCGTATGGCTTCAACCCCCCCGAGATGAAGGATAACGACAA
GACGGTCGATTTTGTCATCCTCAAACACGTCCCCGCCGAGCTCATCCCCG
GTACCACCGCCACAGTGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAA
GCTTCCATTTCGGCGTCGCTCATGCGCAAGGGGCCCAACACTCAGATCTC
ATCCACCGGGGACGCGGCGAAGCCGGGCCAGAACACGATGAAACTGATGC
TTCCCGTGCCTGGAGACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACC
TTGACTCCGGAAGGAGCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAAC
CTATCAAACCAAGATGGCAGGGATGCGAATGCGTCGGGAGTAAGGAAGGG
GTAGAGGGATGGAAGGAAAGTCAAGGGAAGAGTGTGCGTGTTTATGAAAA
AGTGTATGCATTGCTTGGCCGGCACGTGGCATACAGCTTTCCGACAGATT
GTGGAAAAGGAGGGTAGAAAAGATTATGGTAGAGTTATTGAGGAAGGTAA
TGATAGATGTATTGTTTTGGGGTATCTTGTATGTACGACTGGTGTGTACA
ATCAACGTATCCTCAGAAGTGTGAGCAAAGACACACGAGAGGAAAGCAAA
CGAAACATGGCGCGGAGGAGGAGGCGACACTGTTTATCATAGAGCGGAAA
AATACGGAAAGTGTTGACACACGTAGGACGTAATGAAAACACCCGCCCAC
TCGGCCACAGGGGTTTGAGTGGGGAGGGTGTGGCGCCATAGTCGCTCACA
CTCTCCTGACTGTGCTGGTTTTGAGACGACAGGCAGAAATTGAGGTTCAT
ACAAAGAAGTGATTCAATGATTCATTAAACACACGTTTCTTACTACAATG
CAAGCGCGAGTTTAAGAGAGACTC
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protein sequence of NO02G05470.1

>NO02G05470.1-protein ID=NO02G05470.1-protein|Name=NO02G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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Synonyms
Publications