NO02G05460, NO02G05460 (gene) Nannochloropsis oceanica

Overview
NameNO02G05460
Unique NameNO02G05460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1009
Alignment locationchr2:1454750..1455758 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1454750..1455758 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05460 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 428.3 bits (1100), Expect = 1.900e-116
Identity = 214/301 (71.10%), Postives = 237/301 (78.74%), Query Frame = 0
Query:    1 MRPYRVLLSLAVLVPFLALPS----------------------GTKAAGATRGVTDGEPETAEAHCCGMKGLGGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDAPREAVYIVVTLTPEGASWEDRLAEDR 280
            M+ +R L+ LA LVPFLAL S                      G  +  ATRG TDGEP TAE HCCGMKGLGGA +EVMCHP+TVAMGK FTVNV +TSD+KRPVDVHVDVLNA TKAFYAGKWEEFDTQAG  SLTI+MP WGV EPFLWKVF+TPRGEPFPNMLAETGFVAHLADYVKNDC  FKSYGF+PPE+ +N KTVDFV L+ VPA L PG+ A V+VEYN+VGA KA +S +LMRKGPNT ISS  D A PGQN + L LPVP DAP+EAVYIVVTLTP+GASWEDRLAED+
Sbjct:   81 MQLHRTLIGLAALVPFLALTSAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPKEAVYIVVTLTPDGASWEDRLAEDQ 381          
BLAST of NO02G05460 vs. NCBI_GenBank
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05460 vs. NCBI_GenBank
Match: EWM25453.1 (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 2.300e-29
Identity = 78/233 (33.48%), Postives = 130/233 (55.79%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTATVEVEYNMVGAKKAS-ISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTYQTKM 286
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V++K  P+    G    VEV+YN++  + +  +SA+L+R   NT ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR + T +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSV 265          
BLAST of NO02G05460 vs. NCBI_GenBank
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-8
Identity = 52/173 (30.06%), Postives = 79/173 (45.66%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNDKT------VDFVILKHVPAELIPGTTATVEVEYNMV-GAKKASISASL 221
            + V+C P  V  G+ F VN+ FT    RP+D+    L+  TK +Y G       Q G  S    +    +T P  +K +++PRGE  PN +  T     L       C        NP    DN+ T       ++V L  VP  L PG  A + + YN+V  ++KA+ +A++
Sbjct:  147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPC--------NPD--PDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309          
The following BLAST results are available for this feature:
BLAST of NO02G05460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM30149.11.900e-11671.10hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
EWM25360.12.300e-2933.48hypothetical protein Naga_100005g21 [Nannochlorops... [more]
EWM25453.12.300e-2933.48hypothetical protein Naga_100005g20 [Nannochlorops... [more]
EWM24789.11.300e-830.06hypothetical protein Naga_100912g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05460.1NO02G05460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05460.1NO02G05460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05460 ID=NO02G05460|Name=NO02G05460|organism=Nannochloropsis oceanica|type=gene|length=1009bp
ATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCCTTTCTT
AGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTGTGACAG
ACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAAGGCCTG
GGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGCGATGGG
CAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGCGGCCTG
TGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTCTACGCA
GGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCTCACGAT
CAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGGTGTTTG
TGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACGGGCTTT
GTGGCACgtacgtagtaggagggaaggagggagggtgggaaaatgaggga
tgaggtagattgttctgttgtagatgcaccagatatccattcactgactc
ttgtccctcatctcgttctttcctcctcctgcagACCTTGCCGACTACGT
GAAGAACGACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCCCGAGA
TGAAGGATAACGACAAGACGGTCGATTTTGTCATCCTCAAACACGTCCCC
GCCGAGCTCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTACAACAT
GGTCGGCGCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAAGGGGC
CCAACACTCAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGCCAGAAC
ACGATGAAACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAGGCTGT
CTACATCGTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGATCGCC
TTGCGGAGGACCGAACCTATCAAACCAAGATGGCAGGGATGCGAATGCGT
CGGGAGTAA
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protein sequence of NO02G05460.1

>NO02G05460.1-protein ID=NO02G05460.1-protein|Name=NO02G05460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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Synonyms
Publications