NO02G05340, NO02G05340 (gene) Nannochloropsis oceanica

Overview
NameNO02G05340
Unique NameNO02G05340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr2:1430059..1431525 -

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Properties
Property NameValue
Descriptionplant U-box 24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1430059..1431525 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
Homology
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EWM30146.1 (hypothetical protein Naga_100115g18 [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 7.100e-68
Identity = 136/209 (65.07%), Postives = 158/209 (75.60%), Query Frame = 0
Query:    1 MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGPSSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPFSRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQFVNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLEIWSWDGMVP 210
            MGG+ SK A  G CCN RERAF+LV WDAAFL RMMR+  +   +  E   +     D+SQIFAVAPPPVVDARRLL+LVE     Q   T    + TP  RWVRARLVLF P+++ SLAQL QNTRLW IFRRR Y P+LGPR+LQAQ V  AL+RFQR ++R GPGVIV+VAGDG+LEA+PSFA SLRAMLRWGHRLE+WSW+G VP
Sbjct:    1 MGGHPSKPARHGRCCNSRERAFMLVSWDAAFLTRMMRSATSLEDNGRE-VDAAQRVMDLSQIFAVAPPPVVDARRLLTLVEQGVQNQSATTLN-NTTTPVFRWVRARLVLFAPEVTPSLAQLQQNTRLWRIFRRRRYFPVLGPRDLQAQVVAQALNRFQRHAKRHGPGVIVIVAGDGALEAVPSFATSLRAMLRWGHRLEVWSWEGAVP 207          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EWM30154.1 (u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 4.500e-22
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0
Query:  389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREMIGLWR 455
            PEPF+DPL+MEVM DP LTPSGYSYERAVI+EQIRRR +DPMTQ+PL E DLRPNRALREMI +WR
Sbjct:   70 PEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIEIWR 135          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OCL13634.1 (U-box-domain-containing protein [Glonium stellatum])

HSP 1 Score: 72.0 bits (175), Expect = 5.700e-9
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            D P+  +DP+T E+M DP +T  G+SYERA ++E ++R   DP+T++ L  EDLRPN ALRE
Sbjct:  211 DVPDYLVDPITFEIMHDPVVTKHGHSYERATLIEHLKRSPTDPLTRELLRIEDLRPNIALRE 272          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EOD43493.1 (putative u-box domain-containing protein [Neofusicoccum parvum UCRNP2])

HSP 1 Score: 71.6 bits (174), Expect = 7.500e-9
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 0
Query:  384 EDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            E  + P+  +D ++ E+M DP +T +G+SYERA ++E ++R  +DP+T++PL  EDLRPN ALRE
Sbjct:  206 EKREVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPMDPLTREPLKIEDLRPNIALRE 270          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_008082441.1 (RING/U-box [Glarea lozoyensis ATCC 20868] >EPE31030.1 RING/U-box [Glarea lozoyensis ATCC 20868])

HSP 1 Score: 71.2 bits (173), Expect = 9.700e-9
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 0
Query:  389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALR 448
            P+ F+D +T  VMVDP +T +G SYERA I+E ++R   DP+T++PL  EDLRPN ALR
Sbjct:  212 PDYFVDDITFAVMVDPVVTKTGNSYERASIMEHLKRSHTDPLTREPLTMEDLRPNLALR 270          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_020125139.1 (u-box domain-containing protein [Diplodia corticola] >OJD28879.1 u-box domain-containing protein [Diplodia corticola])

HSP 1 Score: 71.2 bits (173), Expect = 9.700e-9
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ E+M DP +T +G+SYERA ++E ++R   DP+T++PL  EDLRPN ALRE
Sbjct:  209 EVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPTDPLTREPLKIEDLRPNIALRE 270          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_002508478.1 (predicted protein [Micromonas commoda] >ACO69736.1 predicted protein [Micromonas commoda])

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  383 DEDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRG-VDPMTQQPLAEEDLRPNRALREMIGLW 454
            D  D+ P+ F   LT EV  DP + PSG+SYER  ++E +R+ G  DP+T++PL E DLRPN +LR     W
Sbjct:  186 DRSDEPPDCFCCKLTFEVFRDPVVAPSGHSYERVAVMEHLRKVGKFDPVTREPLVESDLRPNHSLRNAAHEW 257          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OCK91728.1 (U-box-domain-containing protein [Cenococcum geophilum 1.58])

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +DP+T E+M DP +T  G+SYERA ++E ++R   DP+T++ L  EDLRPN ALRE
Sbjct:  211 EVPDYLIDPITFEIMHDPVVTKHGHSYERATLIEHLKRSPTDPLTRELLRIEDLRPNIALRE 272          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EPS44869.1 (hypothetical protein H072_1139 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 70.5 bits (171), Expect = 1.700e-8
Identity = 27/63 (42.86%), Postives = 48/63 (76.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREM 450
            + P+  +D ++  +M DP +T +G+SY+R+VI++ +RR   DP+T++PL +EDLRPN AL+++
Sbjct:  212 EVPDYLIDSISFSIMTDPVVTKNGHSYDRSVIMDHLRRSNTDPLTREPLRQEDLRPNLALKQV 274          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: KKY16170.1 (putative u-box domain containing protein [Diplodia seriata] >OMP89005.1 STIP1 homology and U box-containing protein 1 [Diplodia seriata])

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-8
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ E+M DP +T +G+SYERA ++E ++R   DP+T++PL  +DLRPN ALRE
Sbjct:  209 EVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPTDPLTREPLKIDDLRPNIALRE 270          
The following BLAST results are available for this feature:
BLAST of NO02G05340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30146.17.100e-6865.07hypothetical protein Naga_100115g18 [Nannochlorops... [more]
EWM30154.14.500e-2281.82u-box domain-containing protein [Nannochloropsis g... [more]
OCL13634.15.700e-951.61U-box-domain-containing protein [Glonium stellatum... [more]
EOD43493.17.500e-947.69putative u-box domain-containing protein [Neofusic... [more]
XP_008082441.19.700e-955.93RING/U-box [Glarea lozoyensis ATCC 20868] >EPE3103... [more]
XP_020125139.19.700e-948.39u-box domain-containing protein [Diplodia corticol... [more]
XP_002508478.11.300e-847.22predicted protein [Micromonas commoda] >ACO69736.1... [more]
OCK91728.11.300e-850.00U-box-domain-containing protein [Cenococcum geophi... [more]
EPS44869.11.700e-842.86hypothetical protein H072_1139 [Dactylellina hapto... [more]
KKY16170.12.200e-846.77putative u-box domain containing protein [Diplodia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007218NSK007218Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05340.1NO02G05340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522950gene_1124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g18gene511Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05340.1NO02G05340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05340 ID=NO02G05340|Name=NO02G05340|organism=Nannochloropsis oceanica|type=gene|length=1467bp
ATGGGTGGGTACTCCTCCAAGTCGGCTAATCGTGGTGGATGCTGCAATCC
TCGCGAGCGCGCTTTCCTTCTCGTGTGTTGGGATGCCGCATTTTTGAATC
GCATGATGCGAACGCCAAATGCCACCGCTGCCGACCTCGAGGAAGGCCCA
AGCAGCACTGCTAGTCCTGCGGACATGAGCCAAATTTTCGCCGTGGCTCC
GCCACCGGTCGTGGACGCTCGCCGTCTCCTAAGCTTAGTCGAAGGTAGCC
ACAACACCCAGCCACCCCCTACCTCTCGCTTCCCATCCGGCACACCCTTT
TCCCGATGGGTGCGCGCCCGCCTCGTCCTCTTTACCCCTGATCTCTCTGC
TTCTCTTGCGCAGCTCCACCAAAACACACGCTTGTGGCACATTTTCCGTC
GTCGACTCTATGTCCCCATTCTGGGCCCACGAGAATTACAAGCTCAGTTT
GTAAATGGTGCTCTGCACCGGTTCCAACGTCGCTCCCGTCGGCGTGGGCC
AGGCGTCATAGTCCTCGTCGCCGGAGACGGCAGCCTGGAAGCCATCCCTA
GTTTTGCTGCCTCTCTGCGGGCAATGCTTCGATGGGGACACAGGTTGGAG
ATCTGGTCTTGGGATGGAATGGTTCCATCGCTGTACAAGGAGCTAGCGAG
TGAAGTGGCGGAAGGGAAGGTGCAAGTGAGGTACCTGAACGACCATCGAC
CGGCCATTCGCTATCAGACAGGAGGGCGAGGAAGCACTGGTGCTGGTATT
GGTGCTGGTATTGGTCTTGATGCTGCAGCTGAAGGCGGTGGAGGGTCTTC
CTTACTGACGCCGCCATCGAATGCTGCCGCGTTGCCGGTAGCGATGCCCA
TGGCCGTTCCTGTTGAGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGAAGAAGAAGAGGGAGGCACATTTGCTGTTGCTCGCCCTCACAATAC
GGCGCAATTCCCTCTGGAGAAAGACGACGGTGGTGGGGCGGATCAAGCTG
CAGCTGCTATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAA
AGGGAGGGAGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGA
TGAGACGGGCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATG
AGGATGACGATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTG
ATGGTAGACCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGT
GATTGTCGAGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGC
CGTTGGCGGAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATC
GGATTGTGGAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGC
GGGGAGGCAAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGA
GTGAAGGTCGAGGGTGA
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protein sequence of NO02G05340.1

>NO02G05340.1-protein ID=NO02G05340.1-protein|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGP
SSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPF
SRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQF
VNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLE
IWSWDGMVPSLYKELASEVAEGKVQVRYLNDHRPAIRYQTGGRGSTGAGI
GAGIGLDAAAEGGGGSSLLTPPSNAAALPVAMPMAVPVEGGRGGGGGGGG
EEEEEGGTFAVARPHNTAQFPLEKDDGGGADQAAAAMAGLEIGEDGDVVE
REGGVEGVEEDDSSSDDETGQRQQTGNAADAYDEDDDAPEPFLDPLTMEV
MVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREMI
GLWRLRQRQQQEQQSHAGRQAREFEGEGGGEGESEGRG*
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Synonyms
Publications