NO02G05270, NO02G05270 (gene) Nannochloropsis oceanica

Overview
NameNO02G05270
Unique NameNO02G05270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3015
Alignment locationchr2:1406076..1409090 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA helicase DnaB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1406076..1409090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006171Toprim_domain
IPR007694DNA_helicase_DnaB-like_C
IPR003593AAA+_ATPase
Homology
BLAST of NO02G05270 vs. NCBI_GenBank
Match: EWM30134.1 (DNA helicase DnaB [Nannochloropsis gaditana])

HSP 1 Score: 749.2 bits (1933), Expect = 1.500e-212
Identity = 363/429 (84.62%), Postives = 398/429 (92.77%), Query Frame = 0
Query:  478 MKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREG--GGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEVENSRLAMVVEQETLQG 905
            MKQKAWQRLYPSPS+GWGLFGLHTV  DAKEIILTEGEFDAMAVYQAT RA VSLPNGCRSLPVEVLPLLERFERILLWMD+D+PG+EGAEKFA+KLG RRTFIVR L EDL PPKDAN+ALLR ++LE+MIQNA+RLPD R+I+FSDLRPLVFDELRN+DKHEGV AKSFP LM L+KGFRKGEMTVLTGPTGAGKTTFLSQLSLDLA GGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGD   LDAVADRFGQLPLMFM+FHGSSN++EV+DAMEYCAYV+DT LV+LDNLQFMMAM G REG  GG +GGFDRF+QMDVAVE+FRRFATEKN+HV+LVVHPRKESDQFRLGISSFSGTAKATQDADNV+ILQRHQGRHYLDVRKNR+DGDLG+VPL FQK  GTL EVE++ L + +E+E++ G
Sbjct:    1 MKQKAWQRLYPSPSAGWGLFGLHTVGADAKEIILTEGEFDAMAVYQATRRAAVSLPNGCRSLPVEVLPLLERFERILLWMDNDTPGIEGAEKFANKLGARRTFIVRALPEDLDPPKDANDALLRNLNLERMIQNAQRLPDTRVIRFSDLRPLVFDELRNRDKHEGVSAKSFPGLMALLKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLARGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDLKSLDAVADRFGQLPLMFMRFHGSSNVEEVVDAMEYCAYVHDTELVVLDNLQFMMAM-GSREGGMGGGKGGFDRFYQMDVAVEKFRRFATEKNIHVILVVHPRKESDQFRLGISSFSGTAKATQDADNVVILQRHQGRHYLDVRKNRYDGDLGVVPLAFQKQTGTLVEVEDNGLGLSLERESMYG 428          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: XP_002183166.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45384.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 580.5 bits (1495), Expect = 9.400e-162
Identity = 324/728 (44.51%), Postives = 429/728 (58.93%), Query Frame = 0
Query:  176 FVSKY---YQIEVGDVMEFLHRKDF---FFRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSG---TGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRP----LQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPL---GLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKE 888
            FVSK+    Q+   D++++   +       R T +H+IL+ CPFC KPT  KADN  K Y+   G A+FCHRCG  GSW+DFK  L G   TGAG                                                    V  A  +   +  DR              R  L+   P QR   P     PL      ++L+      + D     V  +L  T    RG+    LRKYGVG A ++F+++ N +  A+ V FPW++                          +++ RR K+RA+ +K+WQRL P P  GWGLFG HTVP +A EIILTEGE+DAMAV+QATGR  VSLPNGCRSLP EVLPLLE F +I+LWMD+D PG EGAE+FA K+G+ RT+IV+P    + ED   PKDAN+ALL+G+DLE M+++A+ +P  RI+ F DLR  V  E+ + DK+ GVP  S PAL  ++KGFR+GEMTVLTGPTG+GKTTFL Q+SLDLA  G+N LWGSFE++N +LI K+M+Q+   PLP G+      L+A+ADRF +LP  FMKFHG S++D+V+DAM+Y  YV D   +ILDN+QFM++    +        FD+F   DVA+E+FR+FAT+KNVHV LVVHPRKE +  +L ++S  G+AKATQ+AD VLILQ    R Y++V+KNRF+G+LG  PL F +  G   E
Sbjct:   23 FVSKHNQSLQLSARDILDYCDAQGVETEGSRTTPSHVILRTCPFCDKPTHGKADNQHKCYLQIGGGAYFCHRCGNGGSWYDFKATLGGFHVTGAG----------------------------------------------------VRHASVAQARTTEDR-------------FRDFLETSTPVQRDVEP----LPLP----ARKLQACYSTQLFDQGPNEVETYLRET----RGLQKRTLRKYGVGRANYNFLDDANQWVKAECVSFPWIM---------------------KTKHQSFLTRRIKVRAVAKKSWQRLDP-PGGGWGLFGFHTVPPEATEIILTEGEYDAMAVWQATGRPAVSLPNGCRSLPPEVLPLLENFAKIILWMDNDGPGQEGAEQFAKKIGLERTYIVKPGKQHVPEDAPLPKDANDALLQGLDLEAMVRDAQPVPHERILTFRDLRSSVLHEIIHPDKYVGVPMTSLPALTNIIKGFRRGEMTVLTGPTGSGKTTFLGQMSLDLAEQGINMLWGSFEIKNTRLIHKLMQQFSREPLPTGEQAVESKLEALADRFERLPFYFMKFHGGSDVDDVLDAMDYAVYVNDVEHIILDNMQFMISRNKNK-----TSTFDKFDVQDVAIEKFRKFATDKNVHVTLVVHPRKEQEDMKLSMASIYGSAKATQEADTVLILQTDGRRKYIEVKKNRFNGNLGHTPLHFDRLTGRYGE 646          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: CBJ27082.1 (mitochondrial helicase twinkle [Ectocarpus siliculosus])

HSP 1 Score: 577.4 bits (1487), Expect = 8.000e-161
Identity = 324/699 (46.35%), Postives = 417/699 (59.66%), Query Frame = 0
Query:  199 FRETATHLILKECPFCHKPTMDKADNHWKLYIA-RNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKD-----STSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLP--MGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNR-GGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEV 889
            FR     +++KECPFCH  T  KADN WKLYI   NG AW CHRC A GSW+D KRR +G+G    +S               V MP                                + TST  + N R ++    G+ +          + QQR    ++   P+      QR R Y   L+ +P    V D+L+GT  GQRGI   VL KYGVGCA + +  E    E A S+ FPW+V     P           KD     S  P ++T    R K RA++ K WQRL P+    WG+FGLHTVP  A E++LTEGE+DAMAVYQATG+  VSLPNG  SLP+EVLPLLERF +I LWMD D  G  G +KF  KLG RR  +VRPL++D +PPKDANEALL G +L+  +  A     + I  F DLR  V  EL+N  ++ G   +SFP    ++KG R+GE+TVLTGPTG+GKTT LSQLSLDLAAGG++TLWGSFE++N +L++KM+ Q+   P+    G P  L AVADRF  LPL F++FHG +N+DEV+DAM+Y  Y  D   +ILDNLQFM+        GG R G FD+F   D+A+++FR+FATE NVH+ LV+HPRKE + ++L  SS  G+AKATQ+AD V+ILQ  +G   L+V+KNRFDGDLG V L F  H+  L+E+
Sbjct:    3 FRVAGGEVVVKECPFCH-DTGGKADNMWKLYIGLNNGGAWMCHRCAASGSWYDLKRR-AGSGGARFVS--------------QVAMP-------------------------------RSSTSTRNTPNPRRTH----GEEFH---------VTQQR----AAGLRPIPDE---QRARSYPTNLLHNPRFDQVMDYLSGTEPGQRGIKKEVLVKYGVGCAVYKYPGEAGYVE-AQSITFPWIVNKKDIPPEEVKGLEKFVKDKYGEKSRIPDAVT---VRVKARAVRNKQWQRLDPA-GGRWGIFGLHTVPDGATEVVLTEGEYDAMAVYQATGKPAVSLPNGASSLPLEVLPLLERFNKIYLWMDHDGAGQAGVDKFVLKLGTRRCLVVRPLEDDPNPPKDANEALLAGRNLQDFLDGASSTKHDDIQTFQDLRQKVIHELQNPLEYSGTGLQSFPRFTRIIKGLRRGELTVLTGPTGSGKTTILSQLSLDLAAGGLSTLWGSFEIKNTRLMQKMLHQFAGRPVADLAGSPDSLRAVADRFQALPLSFLRFHGGTNVDEVIDAMDYAVYANDVQHIILDNLQFMLTRNSREGHGGKRPGPFDKFDAQDLALDKFRKFATEHNVHITLVIHPRKEDEGYKLTTSSIFGSAKATQEADLVVILQNQKGNKSLEVKKNRFDGDLGEVHLVFDPHSSRLREL 629          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: XP_002291678.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED90529.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 565.8 bits (1457), Expect = 2.400e-157
Identity = 315/705 (44.68%), Postives = 411/705 (58.30%), Query Frame = 0
Query:  199 FRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQE---DLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMG-------------DPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKE 888
            FR T++H+IL+ECPFC KPT  + DN +KLY++  G A+FCHRCGAKGSW+DFK  L G          S+E + + A   S                            G  GR  A+ +  +   N    N  + G +Y G                                                +  +LT T    RG+  +VLRKYGVGCA+++F ++                          P  T    +ST  P   ++PRR K+R++++KAWQRL P P  G+GLFG HTVP DA EII+TEGEFDAMAVYQATGR  VSLPNGCRSLP+EVL LLE F+ + LWMD+D PG EGAE FA KLGV R  +V+P  +      PPKDANEALL G D+ ++++ A  LP  RI+KFSDLR  V  E+ N +K+ G P  S P    L+KGFR+GE+TVLTGPTG+GKTTFL Q SLDL   G+N LWGSFE++N +L+ K+++QY    LP+G                 L ++AD+F  LP+ FMKFHG S++D+V+DAMEY AYV+D   +ILDN+QFM++    +   G    FD+F   D+A+E+FR+FATE NVHV LVVHPRKE +  +LG+SSF G+AKATQ+AD VLILQ    R ++DV+KNRFDG +G  PL FQ+ +G   E
Sbjct:    1 FRYTSSHVILQECPFCPKPTKGRVDNQYKLYVSVGGGAYFCHRCGAKGSWYDFKSELGGF---------SVE-QHSNACANS-------------------------DSSGQGGRQQASNSINSQPWNWNTKN--NNGMNYLGS-----------------------------------------------ILQYLTNT----RGLDRSVLRKYGVGCASYNFHSKD-------------------GSTVIEPTTTQQDLNSTHGP---YIPRRIKVRSIEKKAWQRLDP-PGGGFGLFGWHTVPHDATEIIITEGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEALLTGWDINELLEEASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISR---QSVEGKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDEGAKLGMSSFYGSAKATQEADTVLILQSDGKRKFVDVKKNRFDGTIGHSPLYFQRKSGRYSE 591          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: XP_002297295.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86397.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 562.8 bits (1449), Expect = 2.000e-156
Identity = 314/705 (44.54%), Postives = 411/705 (58.30%), Query Frame = 0
Query:  199 FRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQE---DLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMG-------------DPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKE 888
            FR T++H+IL+ECPFC KPT  + DN +KLY++  G A+FCHRCGAKGSW+DFK  L G          S+E + + A   S                            G  GR  A+ +  +   N    N  + G +Y G                                                +  +LT T    RG+  +VLRKYGVGCA+++F ++        S V    V          P +T             ++PRR K+R++++KAWQRL P P  G+GLFG HTVP +A EII+TEGEFDAMAVYQATGR  VSLPNGCRSLP+EVL LLE F+ + LWMD+D PG EGAE FA KLGV R  +V+P  +      PPKDANEALL G D+ ++++ A  LP  RI+KFSDLR  V  E+ N +K+ G P  S P    L+KGFR+GE+TVLTGPTG+GKTTFL Q SLDL   G+N LWGSFE++N +L+ K+++QY    LP+G                 L ++AD+F  LP+ FMKFHG S++D+V+DAMEY AYV+D   +ILDN+QFM++    +   G    FD+F   D+A+E+FR+FATE NVHV LVVHPRKE +  +LG+SSF G+AKATQ+AD VLILQ    R ++DV+KNRFDG +G  PL FQ+ +G   E
Sbjct:   94 FRYTSSHVILQECPFCPKPTKGRVDNQYKLYVSVGGGAYFCHRCGAKGSWYDFKSELGGF---------SVE-QHSNACANS-------------------------DSSGQGGRQQASNSINSQPWNWNTKN--NNGMNYLGS-----------------------------------------------ILQYLTNT----RGLDRSVLRKYGVGCASYNFHSKDGSTVSGASYVSSMCV--------TFPCSTHG----------PYIPRRIKVRSIEKKAWQRLDP-PGGGFGLFGWHTVPHNATEIIITEGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEALLTGWDINELLEEASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISR---QSVEGKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDEGAKLGMSSFYGSAKATQEADTVLILQSDGKRKFVDVKKNRFDGTIGHSPLYFQRKSGRYSE 688          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: GAX19615.1 (hypothetical protein FisN_19Hh195 [Fistulifera solaris])

HSP 1 Score: 555.4 bits (1430), Expect = 3.200e-154
Identity = 313/724 (43.23%), Postives = 422/724 (58.29%), Query Frame = 0
Query:  199 FRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKE--IILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQED------LSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDA---VADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEVENSRLA--MVVEQETLQGVDGGW 910
            +R T  H+IL+ECPFC KPT  KA+N +KLYI   G A+FCHRCG  GSWFDFK + S                                                 +D     +V+ + + T           + P  H     SQ  P+        PSS    L           Y   L+D P    +R +LT T    RG++   LRKYG+G A +SF N+   +EP + V FPW++   A+  +      G       P S  ++ RR K+RA++ KAWQRL P+   GWG FG HT+    K   I++TEGE+DAMAV+QATG   +SLPNGCRSLPVEVLPLLE +E+I LWMD+D PG EGA  F+ K+G+ R F+V+P  E          PKDAN+ALL+G DL+++I  AK +P  +++ FSDL+  V  E+ + +K+EG    S P    ++KG R+GE+TV+TGPTG+GKTTFL Q+SLDLA  G+N LWGSFEV+N +LI K+++Q+   PLP GDP   D    +A RFG+LPL F+KFHG+S L+EV+DAMEY  YV+D   ++LDNLQFM++        GN   FD+F   D+A+E+FR+FATE+NVH+ LVVHPRKE +  RLGISS  G+AKATQ+ADNVLILQ+   + YLDVRKNRF GDLG   + F +     +E   + +    +  +  +  ++  W
Sbjct:   54 YRTTNNHVILEECPFCTKPTKGKAENTFKLYIQLGGGAYFCHRCGQGGSWFDFKAKTS-------------------------------------------------KDP----QVVKSASQTI----------YSPKMH----ASQPLPM--------PSSRLQAL-----------YNSQLLDQPDNDVLR-YLTET----RGLTVKTLRKYGIGRAKYSFNND-GAWEPVECVTFPWIM--KASDVSFQEELRGVKHPVEDPNS--FLTRRIKVRALENKAWQRLDPA-GGGWGFFGYHTLDGADKSQPIVVTEGEYDAMAVWQATGIPAISLPNGCRSLPVEVLPLLEDYEKIYLWMDNDGPGQEGARVFSQKIGLGRCFMVQPTLESTGCLEFADLPKDANDALLQGHDLKRIIMEAKPVPHEQVLSFSDLQDSVLHEILHPEKYEGTKLPSLPKFSAVVKGLRRGELTVVTGPTGSGKTTFLGQMSLDLAEQGVNVLWGSFEVRNTRLIHKLLQQFARQPLPRGDPSSADKLKDIAKRFGELPLHFLKFHGASELEEVLDAMEYAVYVHDCEHIVLDNLQFMISRQNLASRSGN-SNFDKFDAQDIAIEKFRKFATERNVHLSLVVHPRKEDESARLGISSIYGSAKATQEADNVLILQKDNQKKYLDVRKNRFSGDLGATEIFFDRATNRYREAPTNHVVTPKITNKAPIASIEDHW 679          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: ETK76584.1 (hypothetical protein L915_17043 [Phytophthora parasitica] >ETP06155.1 hypothetical protein F441_17377 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 535.8 bits (1379), Expect = 2.700e-148
Identity = 317/741 (42.78%), Postives = 426/741 (57.49%), Query Frame = 0
Query:  151 SNLTSLNSSFPTSYPTSSTPPGGGTFVSKYYQIE-VGDVMEFLHRKDFFFRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFM-NEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVR-PLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEV 889
            SN+T + SS      +S        FVS++YQ++   DV +FLHRK    RET +H ++++CPFCH  T  KADN +K+Y+ +    + CHRCG+ GSWFDFKR+L G                                                            G +++ +    GSN+  PG                      +++   + QA   ++    Q  L+DDP    V  +LT      RG+S  VL+KY VG     F  ++      A  + FPWM         A        K  T+     +   R K+RA+  KA Q+L P   S WGLFG +TVP  A+E++LTEGEFDAMAV+QATG A VSLPNGC+SLP  VLPLLERF+RI LWMD+D+ G    EKFA KLG+ R +IVR P     S  KDAN+AL  G+DL  ++  A+R+P ++I  F +LR  V++E+ N  K  GV +++FP+L  LMKG R GE+TVLTGPTG GKTTFLSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD    +A ADRF  LP+ F++F GS+ +DEV+DAMEY  Y YD   ++LDN+QFMMA G GR       G+D+F + D A+++FR+FA+ KNVH+ LV+HPRKE +   L +SS  GTAKATQ+ADNVLILQR +G   LD+RKNRFDG LG +PL+F+  + +L+EV
Sbjct:   17 SNVTLMASS------SSRRGLASEAFVSRHYQMQNPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNLFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN----------------------------------------------------------VGVASSSNALYGGSNAGAPG----------------------AAAEVKVIQALDNEKAMAIQKNLLDDPEFEPVLKYLTDI----RGLSKEVLQKYCVGAIEQPFWDHDAGERVNAQCISFPWMA--RQMDMNAMGVVCQDEKQQTTEDKNLYDVVRLKLRAVNDKAKQQLVPKGGS-WGLFGWNTVPTTAQELVLTEGEFDAMAVHQATGMAAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPTNAAASSIKDANDALRAGLDLTAIVNAAERIPHSQITTFEELRRDVYEEIVNPLKACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTFLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQKNL-SGDVRAFEAAADRFEALPMHFLRFFGSTEVDEVLDAMEYAVYAYDVQHILLDNVQFMMA-GQGR-------GYDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEQEDQDLTLSSVFGTAKATQEADNVLILQRTRGESKLDIRKNRFDGALGSIPLKFEPDSASLREV 654          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: XP_008895990.1 (hypothetical protein PPTG_03943 [Phytophthora parasitica INRA-310] >ETL30022.1 hypothetical protein L916_16938 [Phytophthora parasitica] >ETL83256.1 hypothetical protein L917_16766 [Phytophthora parasitica] >ETN18297.1 hypothetical protein PPTG_03943 [Phytophthora parasitica INRA-310] >ETO65113.1 hypothetical protein F444_17549 [Phytophthora parasitica P1976])

HSP 1 Score: 535.8 bits (1379), Expect = 2.700e-148
Identity = 317/741 (42.78%), Postives = 426/741 (57.49%), Query Frame = 0
Query:  151 SNLTSLNSSFPTSYPTSSTPPGGGTFVSKYYQI-EVGDVMEFLHRKDFFFRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFM-NEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVR-PLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEV 889
            SN+T + SS      +S        FVS++YQ+ +  DV +FLHRK    RET +H ++++CPFCH  T  KADN +K+Y+ +    + CHRCG+ GSWFDFKR+L G                                                            G +++ +    GSN+  PG                      +++   + QA   ++    Q  L+DDP    V  +LT      RG+S  VL+KY VG     F  ++      A  + FPWM         A        K  T+     +   R K+RA+  KA Q+L P   S WGLFG +TVP  A+E++LTEGEFDAMAV+QATG A VSLPNGC+SLP  VLPLLERF+RI LWMD+D+ G    EKFA KLG+ R +IVR P     S  KDAN+AL  G+DL  ++  A+R+P ++I  F +LR  V++E+ N  K  GV +++FP+L  LMKG R GE+TVLTGPTG GKTTFLSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD    +A ADRF  LP+ F++F GS+ +DEV+DAMEY  Y YD   ++LDN+QFMMA G GR       G+D+F + D A+++FR+FA+ KNVH+ LV+HPRKE +   L +SS  GTAKATQ+ADNVLILQR +G   LD+RKNRFDG LG +PL+F+  + +L+EV
Sbjct:   17 SNVTLMASS------SSRRGLASEAFVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNLFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN----------------------------------------------------------VGVASSSNALYGGSNAGAPG----------------------AAAEVKVIQALDNEKAMAIQKNLLDDPEFEPVLKYLTDI----RGLSKEVLQKYCVGAIEQPFWDHDAGERVNAQCISFPWMA--RQMDMNAMGVVCQDEKQQTTEDKNLYDVVRLKLRAVNDKAKQQLVPKGGS-WGLFGWNTVPTTAQELVLTEGEFDAMAVHQATGMAAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPTNAAASSIKDANDALRAGLDLTAIVNAAERIPHSQITTFEELRRDVYEEIVNPLKACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTFLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQKNL-SGDVRAFEAAADRFEALPMHFLRFFGSTEVDEVLDAMEYAVYAYDVQHILLDNVQFMMA-GQGR-------GYDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEQEDQDLTLSSVFGTAKATQEADNVLILQRTRGESKLDIRKNRFDGALGSIPLKFEPDSASLREV 654          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: KUF83617.1 (Twinkle protein [Phytophthora nicotianae])

HSP 1 Score: 535.8 bits (1379), Expect = 2.700e-148
Identity = 317/741 (42.78%), Postives = 426/741 (57.49%), Query Frame = 0
Query:  151 SNLTSLNSSFPTSYPTSSTPPGGGTFVSKYYQI-EVGDVMEFLHRKDFFFRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFM-NEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVR-PLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEV 889
            SN+T + SS      +S        FVS++YQ+ +  DV +FLHRK    RET +H ++++CPFCH  T  KADN +K+Y+ +    + CHRCG+ GSWFDFKR+L G                                                            G +++ +    GSN+  PG                      +++   + QA   ++    Q  L+DDP    V  +LT      RG+S  VL+KY VG     F  ++      A  + FPWM         A        K  T+     +   R K+RA+  KA Q+L P   S WGLFG +TVP  A+E++LTEGEFDAMAV+QATG A VSLPNGC+SLP  VLPLLERF+RI LWMD+D+ G    EKFA KLG+ R +IVR P     S  KDAN+AL  G+DL  ++  A+R+P ++I  F +LR  V++E+ N  K  GV +++FP+L  LMKG R GE+TVLTGPTG GKTTFLSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD    +A ADRF  LP+ F++F GS+ +DEV+DAMEY  Y YD   ++LDN+QFMMA G GR       G+D+F + D A+++FR+FA+ KNVH+ LV+HPRKE +   L +SS  GTAKATQ+ADNVLILQR +G   LD+RKNRFDG LG +PL+F+  + +L+EV
Sbjct:   17 SNVTLMASS------SSRRGLASEAFVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNIFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN----------------------------------------------------------VGVASSSNALYGGSNAGAPG----------------------AAAEVKVIQALDNEKAMAIQKNLLDDPEFEPVLKYLTDI----RGLSKEVLQKYCVGAIEQPFWDHDAGERVNAQCISFPWMA--RQMDMNAMGVVCQDEKQQTTEDKNLYDVVRLKLRAVNDKAKQQLVPKGGS-WGLFGWNTVPTTAQELVLTEGEFDAMAVHQATGMAAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPTNAAASSIKDANDALRAGLDLTAIVNAAERIPHSQITTFEELRRDVYEEIVNPLKACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTFLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQKNL-SGDVRAFEAAADRFEALPMHFLRFFGSTEVDEVLDAMEYAVYAYDVQHILLDNVQFMMA-GQGR-------GYDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEQEDQDLTLSSVFGTAKATQEADNVLILQRTRGESKLDIRKNRFDGALGSIPLKFEPDSASLREV 654          
BLAST of NO02G05270 vs. NCBI_GenBank
Match: KUF94381.1 (hypothetical protein AM588_10009857 [Phytophthora nicotianae])

HSP 1 Score: 534.6 bits (1376), Expect = 5.900e-148
Identity = 310/716 (43.30%), Postives = 416/716 (58.10%), Query Frame = 0
Query:  176 FVSKYYQI-EVGDVMEFLHRKDFFFRETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFDFKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPXXXXXXXXXXXXXXXXXNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLLPQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEGQRGISPTVLRKYGVGCATFSFM-NEKNLFEPADSVVFPWMVPDTAAPRAAAPAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLHTVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERFERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVR-PLQEDLSPPKDANEALLRGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPALMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQNVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDEVMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVAVERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLILQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEV 889
            FVS++YQ+ +  DV +FLHRK    RET +H ++++CPFCH  T  KADN +K+Y+ +    + CHRCG+ GSWFDFKR+L G                                                            G +++ +    GSN+  PG                      +++   + QA   ++    Q  L+ DP    V  +LT      RG+S  VL+KY VG     F  ++      A  + FPWM         A        K  T+     +   R K+RA+  KA Q+L P   S WGLFG +TVP  A+E++LTEGEFDAMAV+QATG A VSLPNGC+SLP  VLPLLERF+RI LWMD+D+ G    EKFA KLG+ R +IVR P     S  KDAN+AL  G+DL  ++  A+R+P ++I  F +LR  V++E+ N  K  GV +++FP+L  LMKG R GE+TVLTGPTG GKTTFLSQLSLDL   G++TLWGSFE++N +L+ KM+ Q     L  GD    +A ADRF  LP+ F++F GS+ +DEV+DAMEY  Y YD   ++LDN+QFMMA G GR       G+D+F + D A+++FR+FA+ KNVH+ LV+HPRKE +   L +SS  GTAKATQ+ADNVLILQR +G   LD+RKNRFDG LG +PL+F+  + +L+EV
Sbjct:   15 FVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNIFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN----------------------------------------------------------VGVASSSNALYGGSNAGAPG----------------------AAAEVKVIQALDNEKAMAIQKNLLVDPEFEPVLKYLTDI----RGLSKEVLQKYCVGAIEQPFWDHDAGERVNAQCISFPWMA--RQMDMNAMGVVCQDEKQQTTEDKNLYDVVRLKLRAVNDKAKQQLVPKGGS-WGLFGWNTVPTTAQELVLTEGEFDAMAVHQATGMAAVSLPNGCQSLPPSVLPLLERFKRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPTNAAASSIKDANDALRAGLDLTAIVNAAERIPHSQITTFEELRRDVYEEIVNPLKACGVQSRAFPSLNRLMKGHRMGEVTVLTGPTGCGKTTFLSQLSLDLCGQGVSTLWGSFEIKNTRLMHKMLTQLAQKNL-SGDVRAFEAAADRFEALPMHFLRFFGSTEVDEVLDAMEYAVYAYDVQHILLDNVQFMMA-GQGR-------GYDKFERQDAALDKFRKFASAKNVHLTLVIHPRKEQEDQDLTLSSVFGTAKATQEADNVLILQRTRGESKLDIRKNRFDGALGSIPLKFEPDSASLREV 633          
The following BLAST results are available for this feature:
BLAST of NO02G05270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30134.11.500e-21284.62DNA helicase DnaB [Nannochloropsis gaditana][more]
XP_002183166.19.400e-16244.51predicted protein, partial [Phaeodactylum tricornu... [more]
CBJ27082.18.000e-16146.35mitochondrial helicase twinkle [Ectocarpus silicul... [more]
XP_002291678.12.400e-15744.68predicted protein, partial [Thalassiosira pseudona... [more]
XP_002297295.12.000e-15644.54predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX19615.13.200e-15443.23hypothetical protein FisN_19Hh195 [Fistulifera sol... [more]
ETK76584.12.700e-14842.78hypothetical protein L915_17043 [Phytophthora para... [more]
XP_008895990.12.700e-14842.78hypothetical protein PPTG_03943 [Phytophthora para... [more]
KUF83617.12.700e-14842.78Twinkle protein [Phytophthora nicotianae][more]
KUF94381.15.900e-14843.30hypothetical protein AM588_10009857 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007229NSK007229Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05270.1NO02G05270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622421gene_1118Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100332g4gene523Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05270.1NO02G05270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05270 ID=NO02G05270|Name=NO02G05270|organism=Nannochloropsis oceanica|type=gene|length=3015bp
CCACAGGACGCACGAAGGGCCGCGCCTCGCCCCTTTTCTTCCGCATCCGC
CGCCAGGAAACAAAATACCACTGCTGCCAGCCTCCCCACCTCTGCATTTC
CTTGGTCTCAGCGCCATGCTAAGCCTCACCACCACGGCCGGTACCCGCAG
TGGCAGTAGTCGGAGGCTTGGTCAGGTCCTGGGTCGAGCTACCGGCGCGA
GTGGGAGTTATCGGCAACACGAAAGCCGTATGCTCAGACAGGACGAGCTT
GCCTCGCCACACCCGACCTCATGTTCCTCCACCTCCTTCGCCACCCATCA
CGAGCACCAGCACCCACATTACCACCAACACCCACACTATCAGCAGCAGC
AACAGAATGCGACCACCTTTATTCTGCCGCCATTGTCATCACAGCATCGT
CACGGCTCCGATGACCCCAACAACAGCTCATGCAGCTCATGTTCCCATCC
GTCTTCTTCCTTTCCCACGTCCCCTTTCTCCTCCTCTTTCTCTTCCCCGT
TCTCCCTCAAATCACCAGCTCAATTCAAACAACGCCGGCACAAATCCAGC
AGTGCGTCCATCCTCTCCAATTTGACCTCCCTCAACTCCTCTTTTCCTAC
CTCCTACCCCACTTCTTCAACTCCTCCGGGCGGCGGAACCTTTGTCTCCA
AATACTACCAAATCGAAGTAGGAGACGTCATGGAATTCCTCCATCGAAAA
GATTTCTTTTTTCGGGAGACAGCCACGCATCTCATTCTGAAAGAGTGCCC
ATTCTGTCATAAACCGACCATGGACAAGGCCGACAATCACTGGAAACTCT
ACATTGCAAGAAATGGGGCTGCATGGTTCTGCCATCGGTGTGGTGCGAAG
GGGAGCTGGTTTGACTTTAAGAGGAGGCTGTCGGGCACAGGTGCGGGCAG
TCTGCTTTCACCCGGCTCGCTTGAGATGGAGGAGGCGGAGGCGACCTGGG
GGAGTGTTGGCATGCCACGTGGACGCGGAGCAGGCAGTGGAGGAGGAGGA
GGAGGAGGAGATGGAGGGAATTATTTGATGCGGGATGAAGGACATGCCGG
ACGGGTGATGGCAGCAGGCACCAGCACGACCCTCAGCGTCAATGATAGAG
GGAGCAACAGCTTCGATCCTGGGCAACATTACCAAGGACAGAGATCACAA
CTACAACCACTTTTACCACAACAACGTCGCACCAACCCCTCCTCCTCGTC
CTCCCCCCTCTCCCAGGCCGAACTCGGGCAACGTCTTCGCGAGTACCAAT
ACGCCCTCATGGACGATCCCTCCCAGAGACATGTGCGCGATTGGCTTACA
GGCACGGGGGAGGGTCAACGAGGCATCAGCCCGACGGTCCTGAGGAAGTA
CGGCGTGGGTTGCGCCACCTTTTCGTTCATGAACGAAAAGAACCTGTTCG
AACCCGCCGACTCGGTGGTCTTCCCCTGGATGGTGCCGGACACTGCTGCG
CCTCGTGCTGCTGCTCCTGCTGCTACTGGCGCTTCAAAAGATTCCACCTC
TCCTCCCTCCATCACCTGGGTTCCCCGTCGTTGCAAGATTCGGGCCATGA
AGCAAAAGGCCTGGCAACGGCTCTATCCATCCCCTTCGTCAGGATGGGGT
CTCTTCGGCCTGCACACTGTCCCCGTGGACGCGAAGGAGATCATTCTCAC
AGAAGGAGAGTTCGACGCGATGGCTGTCTACCAAGCCACGGGCCGTGCGA
CTGTATCCCTTCCCAACGGTTGTAGGTCCTTGCCGGTGGAGGTGCTACCG
CTGCTGGAGCGCTTTGAGCGCATCCTGTTGTGGATGGACAGTGATTCTCC
CGGGGTGGAGGGAGCGGAAAAGTTTGCTCATAAGCTGGGGGTGCGCCGCA
CATTTATCGTGCGGCCGTTGCAGGAGGATTTGTCTCCTCCCAAGGACGCG
AACGAAGCTTTGTTGCGAGGGATGGACCTGGAAAAAATGATTCAAAACGC
CAAGAGACTACCCGACAACAGGATCATCAAGTTTTCGGACCTCCGTCCGT
TGGTGTTTGATGAGTTAAGGAACAAGGACAAGCATGAGGGCGTGCCGGCG
AAGAGTTTTCCTGCCTTAATGGGATTAATGAAGGGATTTCGGAAAGGGGA
AATGACTGTATTAACGGGGCCTACGGGGGCGGGGAAAACGACTTTTCTGT
CGCAGCTGTCCTTGGATCTGGCCGCGGGTGGGATGAACACATTGTGGGGG
TCGTTTGAAGTACAGAATGTCAAGTTGATTGAGAAAATGATGCGGCAGTA
CCACGCGGCGCCGTTGCCGATGGGGGATCCGTTGGGGTTGGATGCTGTGG
CGGATAGGTTTGGGCAGCTGCCGTTAATGTTTATGAAGTTCCATGGAAGT
TCGAATTTAGACGAGGTAATGGATGCGATGGAATACTGTGCCTATGTGTA
CGATACTAGCCTGGTCATTCTGGACAATTTGCAGTTTATGATGGCAATGG
GGGGGGGGAGGGAAGGAGGGGGGAATAGGGGAGGGTTTGATCGTTTTCAT
CAGATGGATGTGGCGGTGGAGAGGTTCAGGCGGTTTGCAACGGAGAAAAA
CGTGCACGTGGTGTTGGTGGTGCACCCGCGGAAAGAGAGCGACCAGTTCC
GGTTGGGGATTTCGTCCTTTTCGGGCACGGCCAAGGCGACACAGGATGCG
GATAATGTGTTGATTTTGCAGAGGCACCAGGGAAGGCATTACTTGGATGT
GAGGAAGAATCGGTTCGATGGGGATTTGGGGATCGTGCCGTTGGAGTTTC
AGAAGCACAATGGGACGTTGAAGGAGGTGGAGAACAGTCGGTTGGCGATG
GTGGTGGAGCAGGAGACGCTGCAGGGGGTGGATGGCGGATGGAGGCCGGG
AGGAGGAGGGGTGGGAGGGGACCGGCCGATGGTGAGGGAGAAGACGTTTT
GAGGAGGGAAGGAGGGAGGGGGGGGGTAGGATATGTGAGATAGATTGTGG
AGGGAGTGGAGTAAACATAAAAGCAAATAATCCAAGTGGAAATGAAAGGA
AAGACGGGAAAGACA
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protein sequence of NO02G05270.1

>NO02G05270.1-protein ID=NO02G05270.1-protein|Name=NO02G05270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=929bp
MLSLTTTAGTRSGSSRRLGQVLGRATGASGSYRQHESRMLRQDELASPHP
TSCSSTSFATHHEHQHPHYHQHPHYQQQQQNATTFILPPLSSQHRHGSDD
PNNSSCSSCSHPSSSFPTSPFSSSFSSPFSLKSPAQFKQRRHKSSSASIL
SNLTSLNSSFPTSYPTSSTPPGGGTFVSKYYQIEVGDVMEFLHRKDFFFR
ETATHLILKECPFCHKPTMDKADNHWKLYIARNGAAWFCHRCGAKGSWFD
FKRRLSGTGAGSLLSPGSLEMEEAEATWGSVGMPRGRGAGSGGGGGGGDG
GNYLMRDEGHAGRVMAAGTSTTLSVNDRGSNSFDPGQHYQGQRSQLQPLL
PQQRRTNPSSSSSPLSQAELGQRLREYQYALMDDPSQRHVRDWLTGTGEG
QRGISPTVLRKYGVGCATFSFMNEKNLFEPADSVVFPWMVPDTAAPRAAA
PAATGASKDSTSPPSITWVPRRCKIRAMKQKAWQRLYPSPSSGWGLFGLH
TVPVDAKEIILTEGEFDAMAVYQATGRATVSLPNGCRSLPVEVLPLLERF
ERILLWMDSDSPGVEGAEKFAHKLGVRRTFIVRPLQEDLSPPKDANEALL
RGMDLEKMIQNAKRLPDNRIIKFSDLRPLVFDELRNKDKHEGVPAKSFPA
LMGLMKGFRKGEMTVLTGPTGAGKTTFLSQLSLDLAAGGMNTLWGSFEVQ
NVKLIEKMMRQYHAAPLPMGDPLGLDAVADRFGQLPLMFMKFHGSSNLDE
VMDAMEYCAYVYDTSLVILDNLQFMMAMGGGREGGGNRGGFDRFHQMDVA
VERFRRFATEKNVHVVLVVHPRKESDQFRLGISSFSGTAKATQDADNVLI
LQRHQGRHYLDVRKNRFDGDLGIVPLEFQKHNGTLKEVENSRLAMVVEQE
TLQGVDGGWRPGGGGVGGDRPMVREKTF*
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