NO02G05260, NO02G05260 (gene) Nannochloropsis oceanica

Overview
NameNO02G05260
Unique NameNO02G05260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1727
Alignment locationchr2:1403958..1405684 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1403958..1405684 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G05260 vs. NCBI_GenBank
Match: EWM30129.1 (hypothetical protein Naga_101103g2 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 8.000e-21
Identity = 158/403 (39.21%), Postives = 198/403 (49.13%), Query Frame = 0 
Query:   27 GEQTEAMLSELGQMQNQLDQNVHVENVQLRGQIQALMNEVAALKGANTLNGGGEGGQSEQTHEQVS--------ANAHALALEAQLQATQTERAYFQALLEEKEDVIVRLQKRLEKQPMRNVMPTPPPSVAPKKNKTQPQQSHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALQGQSEDSNNKMV-GYESGSGSSTSPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITHFPLLSSSVIGRLTDMLYDEMQLQKFNHPRQTIQSCLECILTLFDIPSTVQELSELCLVFEQQSEAHARVEEVLENLEAGDGMSKPELDCLKRIFDLVLPP---LPEEE 418
            G   EA  ++      Q   ++  EN+ LR Q+QAL  EVA LKG       G GG +E   ++            +  +ALEAQLQA+Q+E+ YFQAL+EEK+ VI RLQKR+E+Q         P + A   ++  P                                            XXXXXXXXXXXXXXXXXXXXXXXX           G   G  E      V  +ES + S T P                           XXXXXXXXXXXXXXXXXX      LLS      LTD LY+EMQ  ++NHPR  I++CL+C++ LF +PST   L++    FE Q   H R EEVL NL  G+GMS PELDCL+RIF++V+PP   +P EE
Sbjct:   33 GNTEEASTTDAEPSPAQQFVSLQRENMHLREQVQALNEEVAVLKGKLGGRQNGHGGVAESQGKEAERALLVAHPPTSQVVALEAQLQASQSEKKYFQALIEEKQGVIARLQKRVEEQ------DKTPHASAGLGSRMGP---------------------------WPGGFDDGGEGRGAREEXXXXXXXXXXXXXXXXXXXXXXXXGGRSVEAPHVAGRNAGTREQVEPVDVRTFESRAESMTCP--------------PLSIVGVGREGATXXXXXXXXXXXXXXXXXXXXRAHELLSLEGRDILTDELYEEMQRHEYNHPRLIIRACLDCLVPLFKVPSTAGALADFRAFFEGQRSIHTRAEEVLGNLRKGEGMSAPELDCLQRIFEVVVPPAARVPREE 388
The following BLAST results are available for this feature:
BLAST of NO02G05260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30129.18.000e-2139.21hypothetical protein Naga_101103g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007238NSK007238Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05260.1NO02G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101103g2gene525Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05260.1NO02G05260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05260 ID=NO02G05260|Name=NO02G05260|organism=Nannochloropsis oceanica|type=gene|length=1727bp
ACAGGAGCGCGTGGTGACAATGGCGGGCTACCAACAGCAGCCCCACCATC
TCATCAACGGCACACCACCCAACCCCGGAGGAGGAAACCCTCCAGGGGGG
GAGCAGACCGAGGCGATGCTATCTGAGCTAGGACAGATGCAAAACCAGCT
CGACCAAAACGTGCACGTGGAGAACGTACAGCTGCGTGGCCAGATCCAAG
CCTTAATGAACGAGGTCGCAGCTCTCAAAGGCGCGAACACCCTGAATGGT
GGGGGGGAAGGCGGGCAATCAGAACAAACACACGAGCAAGTTTCCGCCAA
CGCCCACGCTCTAGCCCTTGAAGCCCAGCTACAAGCTACACAGACAGAGC
GGGCCTACTTTCAAGCCTTGCTGGAGGAAAAGGAAGACGTGATAGTCCGC
TTGCAAAAACGCTTGGAGAAGCAACCCATGCGAAATGTCATGCCTACTCC
TCCCCCCTCCGTGGCCCCCAAAAAGAACAAGACTCAACCACAGCAATCAC
ACGTCCCCGCCGGTGCTTCGCGCCAGCAACAGCACCCTCAAGATGGCGGA
GACAGCAGTTGTTCTACACGTGTGGAAGGGCCAGTGGCAGGAGGAGGGGG
AGGGGAGGAGGGCGCTCCTCGTCGCGGGTTCCGAGCAAGCAATTTGCGGA
AGAGTGGGACAACCGCCTTGAGCAGCAGCAGCAGTGGTGGAAATGGAAGC
AACAGCCTGGATGACGATGCCATCGTAGGAGCCTTGCAAGGGCAGAGTGA
AGATAGCAACAACAAGATGGTTGGGTACGAGAGCGGGAGCGGAAGCAGCA
CGAGCCCGTTTCCCTCCCTCCTTCCCTCCTCCTCCCTCCTTCCCTCCTCC
TCCCTCCTCCCTTCCAACCCGATCGTTCCTCCTCCTCCTTCTGCAGACCC
CCGCGCAGGCGTCACAACCACTACTGCTACCAGCTCTGCCACCACCATCA
CCCACTTCCCTCTCCTTTCCTCCTCGGTTATCGGCCGTCTCACGGACATG
CTCTATGACGAAATGCAGCTCCAAAAATTCAACCATCCCCGCCAAACGAT
ACAGTCGTGCCTGGAGTGCATCCTCACCCTTTTCGACATTCCGTCTACCG
TTCAGGAATTAAGTGAATTGTGTCTTGTTTTTGAGCAACAGTCCGAGGCC
CATGCCCGCGTGGAGGAGGTGCTCGAGAATTTGGAGGCGGGCGATGGGAT
GAGTAAGCCCGAGTTGGACTGTTTGAAACGGATTTTTGATTTGGTCTTGC
CACCTTTGCCCGAGGAGGAGAGAGGGAAGGAGGAGGGAGGAATTAGGGAA
AGGGGAAGGATAGAGGAAGGGGTAAGGGTGGAGGGGGGGTGGAGGGAGGG
GTGGAGGGAGGAGTGGGGGGAGGGGGAAGAAGGGGAAGGGATTTCATGCG
AGAGCTGATCAGTGCTTTGAACAAATTTCATGGGATGAAAAACAAGAAAC
CGGACCTGGCGTACATGTGTCAAAGGGCCGGTGTGGAGCAGCAGGGTATC
CATACAGTTGAGGCGCTGAGGGAGGGGTTGAAGGACCATCTCGCACTGCA
GGCGGCGTTTATAAATGTTTGTGCCACAATGCCCCCGGGACAACAGTCCT
GTAACCGTCGGTACGTTGCAAGGAAGCTGTTCGAATTTTGTGGCTTGGAT
GCGAGTGTACTGGTGGCCAAAAAGGGAACACAGGGGCGCAAGCCTCCGAT
AAGGAAGAGGGATGGGGTAGGGGGGGG
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protein sequence of NO02G05260.1

>NO02G05260.1-protein ID=NO02G05260.1-protein|Name=NO02G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MAGYQQQPHHLINGTPPNPGGGNPPGGEQTEAMLSELGQMQNQLDQNVHV
ENVQLRGQIQALMNEVAALKGANTLNGGGEGGQSEQTHEQVSANAHALAL
EAQLQATQTERAYFQALLEEKEDVIVRLQKRLEKQPMRNVMPTPPPSVAP
KKNKTQPQQSHVPAGASRQQQHPQDGGDSSCSTRVEGPVAGGGGGEEGAP
RRGFRASNLRKSGTTALSSSSSGGNGSNSLDDDAIVGALQGQSEDSNNKM
VGYESGSGSSTSPFPSLLPSSSLLPSSSLLPSNPIVPPPPSADPRAGVTT
TTATSSATTITHFPLLSSSVIGRLTDMLYDEMQLQKFNHPRQTIQSCLEC
ILTLFDIPSTVQELSELCLVFEQQSEAHARVEEVLENLEAGDGMSKPELD
CLKRIFDLVLPPLPEEERGKEEGGIRERGRIEEGVRVEGGWREGWREEWG
EGEEGEGISCES*
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Synonyms
Publications