NO02G05080, NO02G05080 (gene) Nannochloropsis oceanica

Overview
NameNO02G05080
Unique NameNO02G05080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length962
Alignment locationchr2:1363502..1364463 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1363502..1364463 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05080 vs. NCBI_GenBank
Match: EWM30167.1 (hypothetical protein Naga_100096g15 [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 1.000e-87
Identity = 159/238 (66.81%), Postives = 188/238 (78.99%), Query Frame = 0
Query:   37 RAVSLPRHNPSWAFQTAVSETLQRRGYIEALWDALVDGDKATHRPPIPCEVLPLILHYAASFKEVALSKEEHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEFPHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQYLKV 275
            R + L RHNP WAFQTAVSE L+RRGYI+ALWDAL +GDK++HR P+PCEVLPLILH+A S+KE+ LSKEE +++SNG++ YLTHPIP  LHG++VVGA+I VTSHDQGWSSE PHL+GTYIGSYTWGEA+VVES +PT  TE G  RVV+  EVYRNLHAVK WQTHEK+FV       G G       EE  QSDGG +++ALRPGRAL L LHA Y GW N T+ A IT+QYL+V
Sbjct:   45 RPMRLSRHNP-WAFQTAVSEALKRRGYIDALWDALSNGDKSSHRAPVPCEVLPLILHFAGSYKEMTLSKEEPVRISNGNFAYLTHPIPTNLHGHQVVGARISVTSHDQGWSSEHPHLRGTYIGSYTWGEALVVESSSPTSTTEQGIPRVVVGTEVYRNLHAVKIWQTHEKTFVGPLASPRGKGQVDEESKEEGVQSDGGDLISALRPGRALALHLHAQYPGWTNFTQGAHITIQYLRV 281          
BLAST of NO02G05080 vs. NCBI_GenBank
Match: XP_007801165.1 (hypothetical protein EPUS_03032 [Endocarpon pusillum Z07020] >ERF73191.1 hypothetical protein EPUS_03032 [Endocarpon pusillum Z07020])

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-8
Identity = 62/199 (31.16%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   80 RPPIPCEVLPLILHYAASFKEVALSKEE---HIQLSNGDYLYLTHPIPFELHGYEVV-GAQILVTSHDQGWSSEFPHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQYLKV 275
            R  +  +++P+IL +A  +     S +E   ++Q + G   YL+  +   + G  ++   +I VTSHDQGWSS FP   GTY GS+TW EA V  +G+   V E   +  V  +E+ RN+HA  T +TH  ++   +   DG          ER       +V +L PG ++++   A + GW N+   A + V  + V
Sbjct:   54 RQILVADLIPIILDFAEYWPRTTYSCQESKTYVQHTAG-RPYLSAVLSNAVCGPRMIRKIEIHVTSHDQGWSS-FPQDHGTYNGSWTWFEAEVRSAGS---VGEDEDEHCV-KKELCRNVHADATDKTHTTTWRY-DAEDDG----------ER------DLVRSLGPGSSISVVPWARFPGWQNYVTCASVDVYAVAV 229          
BLAST of NO02G05080 vs. NCBI_GenBank
Match: XP_008604077.1 (hypothetical protein SDRG_00382 [Saprolegnia diclina VS20] >EQC42654.1 hypothetical protein SDRG_00382 [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 2.300e-7
Identity = 55/199 (27.64%), Postives = 85/199 (42.71%), Query Frame = 0
Query:   83 IPCEVLPLILHYAASFKEVALSKEEHIQL-SNGDYLYLT-----HPIPFELHGYEVVGAQILVTSHDQGWSSEFPHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQYLKVA 276
            +P   +  IL     + EV  ++  ++   +N  YL LT     HP    +   + V   I   SHDQGW+++  HL G+Y G ++W E  V    AP G        VV  ++ YRNL A   ++ H      +  +                     H+ A   PG  +T+ L A + GW N  R+A++ + Y KVA
Sbjct:  146 LPVATINAILDRLTLYHEVETTRTLNVSAPANVQYLQLTVPALEHP---AITRTQCVALVIECDSHDQGWATDASHLNGSYRGCHSWVELQVT---APNGSV------VVPRRDAYRNLRAHSAFRRHLVHITDTSVL--------------------AHLTA---PGSRVTVHLRAQFPGWRNEARFARLAIAY-KVA 308          
BLAST of NO02G05080 vs. NCBI_GenBank
Match: XP_017992956.1 (hypothetical protein Malapachy_2676 [Malassezia pachydermatis] >KOS15324.1 hypothetical protein Malapachy_2676 [Malassezia pachydermatis])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 57/205 (27.80%), Postives = 90/205 (43.90%), Query Frame = 0
Query:   80 RPPIPCEVLPLILHYAASFKEVALSKE---EHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEFPHLK--GTYIGSYTWGE------AVVVESGAPTG---VTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQ 271
            R  +P E+L  +  +A    ++ +S+     +   +N  YLY T P+   LH   ++  ++ + SHDQGWSSE P+    GTY GSYTW +      A   +S A TG     +  +   +  QE+ RN+HA   ++ H  +   S                         IV   +PG  L + +   + GW+N  R A I V+
Sbjct:   88 RKGLPPELLRRVDAFADEGYDLCVSRSFLGMYTNNANTRYLY-TPPLASSLHHGCLLRVEVEMDSHDQGWSSE-PNRSWLGTYQGSYTWWDLTLERPAQAAQSSAETGSDTEEDVPAWTEIHRQELCRNIHASDAFKVHTITLDTS-----------------------SPIVQDAQPGDRLCVWVRTQFPGWINFARHASIRVR 267          
BLAST of NO02G05080 vs. NCBI_GenBank
Match: XP_012208855.1 (hypothetical protein SPRG_14337 [Saprolegnia parasitica CBS 223.65] >KDO20465.1 hypothetical protein SPRG_14337 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 64.7 bits (156), Expect = 5.100e-7
Identity = 51/199 (25.63%), Postives = 84/199 (42.21%), Query Frame = 0
Query:   83 IPCEVLPLILHYAASFKEVALSKEEHIQL-SNGDYLYLT-----HPIPFELHGYEVVGAQILVTSHDQGWSSEFPHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKTWQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLKLHAMYAGWVNHTRWAQITVQYLKVA 276
            +P   +  +L     + EV  ++  ++   +N  YL LT     HP    +   + V   +   SHDQGW+++  HL G+Y G ++W E  V    AP G        V+  ++  RNL A   ++ H                           +D G +   + PG  +T+ L A + GW N  R+A++ + Y KVA
Sbjct: 1153 LPVATINAMLDRLTIYHEVETTRTLNVSAPANAPYLQLTVPALEHP---AITRTQCVALVVECDSHDQGWATDASHLNGSYRGCHSWVELHVT---APNGTV------VIPRRDACRNLRARSAFRRHLLHI-----------------------TDTGMLAHLVAPGTRVTVSLRAQFPGWSNEARFARLAIAY-KVA 1315          
The following BLAST results are available for this feature:
BLAST of NO02G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM30167.11.000e-8766.81hypothetical protein Naga_100096g15 [Nannochlorops... [more]
XP_007801165.11.200e-831.16hypothetical protein EPUS_03032 [Endocarpon pusill... [more]
XP_008604077.12.300e-727.64hypothetical protein SDRG_00382 [Saprolegnia dicli... [more]
XP_017992956.13.000e-727.80hypothetical protein Malapachy_2676 [Malassezia pa... [more]
XP_012208855.15.100e-725.63hypothetical protein SPRG_14337 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007186NSK007186Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05080.1NO02G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636340gene_1099Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g15gene487Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05080.1NO02G05080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05080 ID=NO02G05080|Name=NO02G05080|organism=Nannochloropsis oceanica|type=gene|length=962bp
TGTTTCCCCTCGCTTCTCCAACTCCTCCCTCACCCCTTTCCCCCAATCTT
ACACAGGCGCTTATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCT
CTCCTCATCCGCTTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCC
CGCCGTCCTCTACCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCG
TCCTGGGCCTTTCAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTA
CATCGAAGCCCTTTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATC
GCCCTCCCATTCCTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCG
TCGTTCAAAGAAGTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAA
TGGCGACTATCTCTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGT
ATGAGGTGGTGGGAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGG
AGCAGTGAATTTCCTCATTTGAAGGGGACGTATATAGGGAGCTATACATG
GGGGGAGGCGGTGGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGG
GGGGATCACAGCGGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACAT
GCTGTCAAGACGTGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATG
TGTTGGGGACGGGGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGC
GGCAGTCGGATGGGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCC
TTGACCTTGAAGTTACATGCTATGTATGCTGGGTGGGTCAACCATACCCG
GTGGGCGCAGATCACGGTGCAGTACTTGAAGGTGGCTTGAGGGGGGGGGA
GGTAGGGACGTGTGACAATATGAGAAGTGGGATGATGAGGAAGAAGAGAA
AAGGTGAGAGGG
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protein sequence of NO02G05080.1

>NO02G05080.1-protein ID=NO02G05080.1-protein|Name=NO02G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MGTAFGSPASSSLSSSAFSSSNISSTSSSPPSSTARRAVSLPRHNPSWAF
QTAVSETLQRRGYIEALWDALVDGDKATHRPPIPCEVLPLILHYAASFKE
VALSKEEHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEF
PHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKT
WQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLK
LHAMYAGWVNHTRWAQITVQYLKVA*
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Synonyms
Publications