NO02G05010, NO02G05010 (gene) Nannochloropsis oceanica

Overview
NameNO02G05010
Unique NameNO02G05010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr2:1342138..1344285 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1342138..1344285 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008479DUF760
Homology
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BLAST of NO02G05010 vs. NCBI_GenBank
Match: XP_005779550.1 (hypothetical protein EMIHUDRAFT_434955 [Emiliania huxleyi CCMP1516] >XP_005785024.1 hypothetical protein EMIHUDRAFT_423756 [Emiliania huxleyi CCMP1516] >EOD27121.1 hypothetical protein EMIHUDRAFT_434955 [Emiliania huxleyi CCMP1516] >EOD32595.1 hypothetical protein EMIHUDRAFT_423756 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-7
Identity = 72/228 (31.58%), Postives = 105/228 (46.05%), Query Frame = 0 
Query:  320 SASRRVQEAINEQVSTLLGMFLREPDFQSRLQIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGGRPAPPPVGKLEGTVTVLQGRGNGLGSGEWGRDGEGRSVTMGAKELLGSLVREVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLDCMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGY 548
            +A   VQ A+ + V+ LLG    E      +   G  LA+LFF +Q+ GYMF NA+   S S++L       +D +A      A PPV   +G +TV                  G    + A   +  L  EVE LR Q+  A   RE   +  LLAFI++LP D+ R L   +    L+ M +LV  +L R +    +  + A PV     +   E+ I+Q+VQGY
Sbjct:    8 TAPEAVQLAVKQTVAALLGQMPAEV-ADGAITATGQSLASLFFSMQMTGYMFRNAEYRRSLSTTL----AAAEDEMAEAA---ALPPV---KGEITVSL--------------APGMEAKVDAAAYMAELRSEVEGLRAQLASA---REKKAEQPLLAFIQSLPGDEARQLQGGVSSEVLEAMGQLV-TSLLRDMNVAPDALTEA-PV-----AKMREVLILQLVQGY 200
The following BLAST results are available for this feature:
BLAST of NO02G05010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
XP_005779550.12.200e-731.58hypothetical protein EMIHUDRAFT_434955 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007178NSK007178Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05010.1NO02G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575289gene_1093Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g8gene481Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05010.1NO02G05010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05010 ID=NO02G05010|Name=NO02G05010|organism=Nannochloropsis oceanica|type=gene|length=2148bp
ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT
TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT
GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA
AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC
TGGAGTGATAAGCAAGgtaatttgtggatttgaccagagcatttgtttgt
aggcgagccgcgggggtacaattaattccatttatccaccctttctgtca
ttcctctctcatatttctcctctcaacgcactcatccgtatcacactcga
cacagCCACAAACTGCCATCCACCGCAGCCTTACGCGGCTCCAACTTTGG
AAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCGTCGCAAAGAGC
CGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGATGACGATGATT
CTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATACCATCATCATA
GAAGGAATTGATGATGAGGACGACGATAATGAAGATTATGGCAATCTACG
TCACGACCACGAGGACAGCGACGATGAAGAAATAGATGACGTGCGTGCCG
CAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCCCCTCAGAGCCA
GACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCTTCTTCCTCTTC
TTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGACTGCGACTACCA
CCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAA
GCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACTGGACGATAACA
GCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCA
AGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACG
CACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCATCAATATTCAG
CTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTG
Ggtaagccctgcatattccacgtgtctccctcatccttctttcccttctt
gcttcagtcattctgagggtgattgtgaccaaaggatggcgtcaatagtc
ggcctcgaggcagtcgacgaacacatctgtctctaccttgccacccatcc
ctcctcctttttctctctcccttccctcgaccccagtcggcaccccctcc
cccccaccccctcccttttctacctccccctcattccccctccccccgtc
cccgacccccaccccagGCATGTTTCTGCGTGAGCCGGACTTCCAATCCC
GCCTGCAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAG
TTACTCGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAG
CAGTCTGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAG
GGGGGAGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACA
GTTTTACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGA
TGGAGAGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTT
TGGTCAGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATG
ACCCGAGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCT
GCCGGAGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGC
TGGATTGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCA
ACGGTCGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAA
GAGCATTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGT
TAGCGGCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGA
GGGACGGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG
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protein sequence of NO02G05010.1

>NO02G05010.1-protein ID=NO02G05010.1-protein|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MHLLPRPKQRLKHHEHVYARFFFSALVLVLACSCHGWLLHRHALMPLVVR
RRTGGMWLAPHHEQFAAGVISKPQTAIHRSLTRLQLWKGWGLGGGNNSTA
SQRAEDEEDEDEDEYEDDDDSQDLLGEEGEDKDTIIIEGIDDEDDDNEDY
GNLRHDHEDSDDEEIDDVRAAVAAIRNSAAATSPSEPDDDVALPHTSAAS
SSSSSSSSSFSMNQPLTATTTTLKSSSSSSSSSSSSSSSSNSSNSNSNSN
SNSKPVQMMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEI
WRQRTPEDVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRL
QIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGG
RPAPPPVGKLEGTVTVLQGRGNGLGSGEWGRDGEGRSVTMGAKELLGSLV
REVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLD
CMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLA
ATEEDQEQQLKLFEGGTGGGSGGGGGGDFL*
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Synonyms
Publications