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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1342138..1344285 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05010.1 vs.
Match: EWM30178.1 (Protein of unknown function DUF760 [Nannochloropsis gaditana]) HSP 1 Score: 469.5 bits (1207), Expect = 1.500e-128 Identity = 305/557 (54.76%), Postives = 368/557 (66.07%), Query Frame = 0
Query: 24 SALVLVLAC----SCHGWLLHRHALMPLVVRRRTGGMWLAPHHEQFAAGVISKPQTAIHRSL-TRLQLWKGWGLGGGNNSTASQRAEDEEDEDEDEYEDDDDSQDLLGEEGEDKDTIIIEGIDDEDDDNEDYGNLRHDHEDSDDEEIDDVRAAVAAIRNSAAATSPSEPDDDVALPHTSAASSSSSSSSSSFSMNQPLTATTTTLKSSSSSSSSSSSSSSSSNSSNSNSNSNSNSKPVQMMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEIWRQRTPEDVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRLQIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGGRPAPPPVGKLEGTVTVLQ-GRGNGLGSGEWGRDGEGRSVTMGAKELLGSLVREVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLDCMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLAATEEDQEQQLKLFEGGTGGGSGGG 575
S +L+LAC SC GWLL R + P RRR G +PH++ AA ++S+P+ HR+ T L LWK WGLGG N + +S + ++ E ++E D D ++++DDD + L D D ID + + D+D L + + S + S +S+ + S ++S + + S V+ +TEK + Q D+NSFFDGFEGF GRRVSYSSQPKARHNIVFEIWRQR+PE++AILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQS LQIQGGQLANLFFKLQL+GYMF+NADKVLSASSSLN ++ R PPVG LEGT+TV+ GR N LGSGE G+ R+VTMGAKELLGSLVREVE LRE+V+RA++ RE +RQ +LL FIR+LPE+QQR+LTE+ PDY LDCMRKLVDLALARAIPTVGNQW+P +PVLIP KSIFAELCIMQVVQGYLLAATEEDQ QQLKLF G TG G GGG
Sbjct: 5 STTLLLLACCTWYSCRGWLLPRPVIAPSAFRRRGNGNCFSPHYQDPAA-MLSQPR---HRAARTTLHLWKAWGLGGNNGTASSHEGKGDKAEMKNEGAAKDSEDD----------------VEEDDDDMDSQALLGDSGADEDSIIIDGI-----------------DDDEDEFLHGNRKNAEVPRGTKSGLEKTE----------SGRFASAYTISPTASGSPPTFPDTGSMESTTVKQLTEKSLAQSDENSFFDGFEGFAGRRVSYSSQPKARHNIVFEIWRQRSPEEIAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSHLQIQGGQLANLFFKLQLMGYMFANADKVLSASSSLNMKKKARQ------------PPVGSLEGTLTVVPGGRTNVLGSGEEGKMEGARNVTMGAKELLGSLVREVEALREEVDRARVAREASRQGNLLTFIRSLPEEQQRSLTESAPDYVLDCMRKLVDLALARAIPTVGNQWNPKSPVLIPGKSIFAELCIMQVVQGYLLAATEEDQAQQLKLF-GSTGLGQGGG 501
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC TGGAGTGATAAGCAAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGC TCCAACTTTGGAAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCG TCGCAAAGAGCCGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGA TGACGATGATTCTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATA CCATCATCATAGAAGGAATTGATGATGAGGACGACGATAATGAAGATTAT GGCAATCTACGTCACGACCACGAGGACAGCGACGATGAAGAAATAGATGA CGTGCGTGCCGCAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCC CCTCAGAGCCAGACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCT TCTTCCTCTTCTTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGAC TGCGACTACCACCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC AGCAACAGCAAGCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACT GGACGATAACAGCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTG TATCGTACTCAAGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATT TGGCGGCAACGCACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCA TCAATATTCAGCTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCT CTACGCTATTGGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTG CAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACT CGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTC TGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGG AGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTT ACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAG AGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTC AGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCG AGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGG AGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGCTGGAT TGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGT CGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCA TTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCG GCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGAC GGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG back to topprotein sequence of NO02G05010.1 >NO02G05010.1-protein ID=NO02G05010.1-protein|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MHLLPRPKQRLKHHEHVYARFFFSALVLVLACSCHGWLLHRHALMPLVVR RRTGGMWLAPHHEQFAAGVISKPQTAIHRSLTRLQLWKGWGLGGGNNSTA SQRAEDEEDEDEDEYEDDDDSQDLLGEEGEDKDTIIIEGIDDEDDDNEDY GNLRHDHEDSDDEEIDDVRAAVAAIRNSAAATSPSEPDDDVALPHTSAAS SSSSSSSSSFSMNQPLTATTTTLKSSSSSSSSSSSSSSSSNSSNSNSNSN SNSKPVQMMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEI WRQRTPEDVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRL QIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGG RPAPPPVGKLEGTVTVLQGRGNGLGSGEWGRDGEGRSVTMGAKELLGSLV REVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLD CMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLA ATEEDQEQQLKLFEGGTGGGSGGGGGGDFL* back to topmRNA from alignment at chr2:1342138..1344285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr2:1342138..1344285- (Nannochloropsis oceanica) ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT
TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT
GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA
AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC
TGGAGTGATAAGCAAGGTAATTTGTGGATTTGACCAGAGCATTTGTTTGT
AGGCGAGCCGCGGGGGTACAATTAATTCCATTTATCCACCCTTTCTGTCA
TTCCTCTCTCATATTTCTCCTCTCAACGCACTCATCCGTATCACACTCGA
CACAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGCTCCAACTTTGG
AAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCGTCGCAAAGAGC
CGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGATGACGATGATT
CTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATACCATCATCATA
GAAGGAATTGATGATGAGGACGACGATAATGAAGATTATGGCAATCTACG
TCACGACCACGAGGACAGCGACGATGAAGAAATAGATGACGTGCGTGCCG
CAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCCCCTCAGAGCCA
GACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCTTCTTCCTCTTC
TTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGACTGCGACTACCA
CCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAA
GCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACTGGACGATAACA
GCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCA
AGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACG
CACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCATCAATATTCAG
CTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTG
GGTAAGCCCTGCATATTCCACGTGTCTCCCTCATCCTTCTTTCCCTTCTT
GCTTCAGTCATTCTGAGGGTGATTGTGACCAAAGGATGGCGTCAATAGTC
GGCCTCGAGGCAGTCGACGAACACATCTGTCTCTACCTTGCCACCCATCC
CTCCTCCTTTTTCTCTCTCCCTTCCCTCGACCCCAGTCGGCACCCCCTCC
CCCCCACCCCCTCCCTTTTCTACCTCCCCCTCATTCCCCCTCCCCCCGTC
CCCGACCCCCACCCCAGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCC
GCCTGCAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAG
TTACTCGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAG
CAGTCTGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAG
GGGGGAGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACA
GTTTTACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGA
TGGAGAGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTT
TGGTCAGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATG
ACCCGAGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCT
GCCGGAGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGC
TGGATTGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCA
ACGGTCGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAA
GAGCATTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGT
TAGCGGCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGA
GGGACGGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG back to topCoding sequence (CDS) from alignment at chr2:1342138..1344285- >NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr2:1342138..1344285- (Nannochloropsis oceanica) ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC TGGAGTGATAAGCAAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGC TCCAACTTTGGAAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCG TCGCAAAGAGCCGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGA TGACGATGATTCTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATA CCATCATCATAGAAGGAATTGATGATGAGGACGACGATAATGAAGATTAT GGCAATCTACGTCACGACCACGAGGACAGCGACGATGAAGAAATAGATGA CGTGCGTGCCGCAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCC CCTCAGAGCCAGACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCT TCTTCCTCTTCTTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGAC TGCGACTACCACCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC AGCAACAGCAAGCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACT GGACGATAACAGCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTG TATCGTACTCAAGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATT TGGCGGCAACGCACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCA TCAATATTCAGCTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCT CTACGCTATTGGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTG CAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACT CGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTC TGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGG AGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTT ACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAG AGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTC AGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCG AGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGG AGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGCTGGAT TGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGT CGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCA TTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCG GCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGAC GGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG back to top
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