NO02G05010.1, NO02G05010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05010.1
Unique NameNO02G05010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1743
Alignment locationchr2:1342138..1344285 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1342138..1344285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G05010.1 vs.
Match: EWM30178.1 (Protein of unknown function DUF760 [Nannochloropsis gaditana])

HSP 1 Score: 469.5 bits (1207), Expect = 1.500e-128
Identity = 305/557 (54.76%), Postives = 368/557 (66.07%), Query Frame = 0
Query:   24 SALVLVLAC----SCHGWLLHRHALMPLVVRRRTGGMWLAPHHEQFAAGVISKPQTAIHRSL-TRLQLWKGWGLGGGNNSTASQRAEDEEDEDEDEYEDDDDSQDLLGEEGEDKDTIIIEGIDDEDDDNEDYGNLRHDHEDSDDEEIDDVRAAVAAIRNSAAATSPSEPDDDVALPHTSAASSSSSSSSSSFSMNQPLTATTTTLKSSSSSSSSSSSSSSSSNSSNSNSNSNSNSKPVQMMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEIWRQRTPEDVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRLQIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGGRPAPPPVGKLEGTVTVLQ-GRGNGLGSGEWGRDGEGRSVTMGAKELLGSLVREVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLDCMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLAATEEDQEQQLKLFEGGTGGGSGGG 575
            S  +L+LAC    SC GWLL R  + P   RRR  G   +PH++  AA ++S+P+   HR+  T L LWK WGLGG N + +S   + ++ E ++E    D   D                ++++DDD +    L     D D   ID +                 + D+D  L      +     + S     +          S   +S+ + S ++S +        +  S  V+ +TEK + Q D+NSFFDGFEGF GRRVSYSSQPKARHNIVFEIWRQR+PE++AILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQS LQIQGGQLANLFFKLQL+GYMF+NADKVLSASSSLN  ++ R             PPVG LEGT+TV+  GR N LGSGE G+    R+VTMGAKELLGSLVREVE LRE+V+RA++ RE +RQ +LL FIR+LPE+QQR+LTE+ PDY LDCMRKLVDLALARAIPTVGNQW+P +PVLIP KSIFAELCIMQVVQGYLLAATEEDQ QQLKLF G TG G GGG
Sbjct:    5 STTLLLLACCTWYSCRGWLLPRPVIAPSAFRRRGNGNCFSPHYQDPAA-MLSQPR---HRAARTTLHLWKAWGLGGNNGTASSHEGKGDKAEMKNEGAAKDSEDD----------------VEEDDDDMDSQALLGDSGADEDSIIIDGI-----------------DDDEDEFLHGNRKNAEVPRGTKSGLEKTE----------SGRFASAYTISPTASGSPPTFPDTGSMESTTVKQLTEKSLAQSDENSFFDGFEGFAGRRVSYSSQPKARHNIVFEIWRQRSPEEIAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSHLQIQGGQLANLFFKLQLMGYMFANADKVLSASSSLNMKKKARQ------------PPVGSLEGTLTVVPGGRTNVLGSGEEGKMEGARNVTMGAKELLGSLVREVEALREEVDRARVAREASRQGNLLTFIRSLPEEQQRSLTESAPDYVLDCMRKLVDLALARAIPTVGNQWNPKSPVLIPGKSIFAELCIMQVVQGYLLAATEEDQAQQLKLF-GSTGLGQGGG 501          
The following BLAST results are available for this feature:
BLAST of NO02G05010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30178.11.500e-12854.76Protein of unknown function DUF760 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05010NO02G05010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05010.1NO02G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05010.1.cds1NO02G05010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05010.1.cds2NO02G05010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05010.1.cds3NO02G05010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT
TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT
GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA
AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC
TGGAGTGATAAGCAAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGC
TCCAACTTTGGAAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCG
TCGCAAAGAGCCGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGA
TGACGATGATTCTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATA
CCATCATCATAGAAGGAATTGATGATGAGGACGACGATAATGAAGATTAT
GGCAATCTACGTCACGACCACGAGGACAGCGACGATGAAGAAATAGATGA
CGTGCGTGCCGCAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCC
CCTCAGAGCCAGACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCT
TCTTCCTCTTCTTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGAC
TGCGACTACCACCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC
AGCAACAGCAAGCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACT
GGACGATAACAGCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTG
TATCGTACTCAAGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATT
TGGCGGCAACGCACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCA
TCAATATTCAGCTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCT
CTACGCTATTGGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTG
CAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACT
CGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTC
TGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGG
AGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTT
ACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAG
AGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTC
AGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCG
AGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGG
AGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGCTGGAT
TGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGT
CGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCA
TTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCG
GCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGAC
GGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG
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protein sequence of NO02G05010.1

>NO02G05010.1-protein ID=NO02G05010.1-protein|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MHLLPRPKQRLKHHEHVYARFFFSALVLVLACSCHGWLLHRHALMPLVVR
RRTGGMWLAPHHEQFAAGVISKPQTAIHRSLTRLQLWKGWGLGGGNNSTA
SQRAEDEEDEDEDEYEDDDDSQDLLGEEGEDKDTIIIEGIDDEDDDNEDY
GNLRHDHEDSDDEEIDDVRAAVAAIRNSAAATSPSEPDDDVALPHTSAAS
SSSSSSSSSFSMNQPLTATTTTLKSSSSSSSSSSSSSSSSNSSNSNSNSN
SNSKPVQMMTEKGMVQLDDNSFFDGFEGFHGRRVSYSSQPKARHNIVFEI
WRQRTPEDVAILYKGQHQYSASRRVQEAINEQVSTLLGMFLREPDFQSRL
QIQGGQLANLFFKLQLLGYMFSNADKVLSASSSLNFNRRGRDDGVAGGGG
RPAPPPVGKLEGTVTVLQGRGNGLGSGEWGRDGEGRSVTMGAKELLGSLV
REVEVLREQVERAKMTREVNRQSDLLAFIRALPEDQQRALTENIPDYTLD
CMRKLVDLALARAIPTVGNQWSPATPVLIPSKSIFAELCIMQVVQGYLLA
ATEEDQEQQLKLFEGGTGGGSGGGGGGDFL*
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mRNA from alignment at chr2:1342138..1344285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr2:1342138..1344285- (Nannochloropsis oceanica)
ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC TGGAGTGATAAGCAAGGTAATTTGTGGATTTGACCAGAGCATTTGTTTGT AGGCGAGCCGCGGGGGTACAATTAATTCCATTTATCCACCCTTTCTGTCA TTCCTCTCTCATATTTCTCCTCTCAACGCACTCATCCGTATCACACTCGA CACAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGCTCCAACTTTGG AAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCGTCGCAAAGAGC CGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGATGACGATGATT CTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATACCATCATCATA GAAGGAATTGATGATGAGGACGACGATAATGAAGATTATGGCAATCTACG TCACGACCACGAGGACAGCGACGATGAAGAAATAGATGACGTGCGTGCCG CAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCCCCTCAGAGCCA GACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCTTCTTCCTCTTC TTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGACTGCGACTACCA CCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAA GCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACTGGACGATAACA GCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTGTATCGTACTCA AGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATTTGGCGGCAACG CACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCATCAATATTCAG CTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCTCTACGCTATTG GGTAAGCCCTGCATATTCCACGTGTCTCCCTCATCCTTCTTTCCCTTCTT GCTTCAGTCATTCTGAGGGTGATTGTGACCAAAGGATGGCGTCAATAGTC GGCCTCGAGGCAGTCGACGAACACATCTGTCTCTACCTTGCCACCCATCC CTCCTCCTTTTTCTCTCTCCCTTCCCTCGACCCCAGTCGGCACCCCCTCC CCCCCACCCCCTCCCTTTTCTACCTCCCCCTCATTCCCCCTCCCCCCGTC CCCGACCCCCACCCCAGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCC GCCTGCAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAG TTACTCGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAG CAGTCTGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAG GGGGGAGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACA GTTTTACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGA TGGAGAGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTT TGGTCAGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATG ACCCGAGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCT GCCGGAGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGC TGGATTGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCA ACGGTCGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAA GAGCATTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGT TAGCGGCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGA GGGACGGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG
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Coding sequence (CDS) from alignment at chr2:1342138..1344285-

>NO02G05010.1 ID=NO02G05010.1|Name=NO02G05010.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr2:1342138..1344285- (Nannochloropsis oceanica)
ATGCACCTGCTACCTCGTCCAAAACAACGCCTGAAACACCACGAGCATGT
TTATGCCCGTTTCTTTTTCTCTGCCCTGGTGCTGGTGCTCGCCTGCTCCT
GCCACGGATGGCTTCTCCATCGCCATGCATTAATGCCTTTGGTTGTGCGA
AGACGAACAGGGGGGATGTGGCTCGCCCCGCATCATGAACAATTTGCTGC
TGGAGTGATAAGCAAGCCACAAACTGCCATCCACCGCAGCCTTACGCGGC
TCCAACTTTGGAAAGGATGGGGTTTGGGCGGAGGGAACAATTCCACTGCG
TCGCAAAGAGCCGAGGATGAAGAGGACGAGGACGAGGACGAGTACGAGGA
TGACGATGATTCTCAGGACTTGCTAGGCGAAGAAGGAGAAGATAAAGATA
CCATCATCATAGAAGGAATTGATGATGAGGACGACGATAATGAAGATTAT
GGCAATCTACGTCACGACCACGAGGACAGCGACGATGAAGAAATAGATGA
CGTGCGTGCCGCAGTCGCGGCAATACGAAACTCCGCCGCTGCGACTTCCC
CCTCAGAGCCAGACGATGACGTGGCTCTCCCCCATACTTCCGCTGCTTCT
TCTTCCTCTTCTTCTTCCTCCTCCTCATTCTCTATGAACCAGCCTTTGAC
TGCGACTACCACCACTCTCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCAACAGCAAC
AGCAACAGCAAGCCCGTCCAAATGATGACCGAGAAAGGTATGGTGCAACT
GGACGATAACAGCTTTTTTGATGGCTTCGAGGGTTTTCACGGCCGTCGTG
TATCGTACTCAAGTCAGCCGAAAGCGAGGCATAACATCGTCTTTGAAATT
TGGCGGCAACGCACCCCCGAGGACGTGGCAATTTTGTACAAGGGACAGCA
TCAATATTCAGCTTCGAGACGAGTGCAGGAGGCCATCAACGAACAGGTCT
CTACGCTATTGGGCATGTTTCTGCGTGAGCCGGACTTCCAATCCCGCCTG
CAGATCCAGGGAGGGCAGCTTGCCAATCTATTTTTCAAGCTCCAGTTACT
CGGCTACATGTTCTCAAACGCTGACAAAGTCCTGTCGGCCTCGAGCAGTC
TGAATTTTAACAGAAGAGGAAGAGATGACGGAGTCGCAGGAGGAGGGGGG
AGACCAGCTCCCCCGCCGGTGGGAAAGTTGGAAGGGACGGTAACAGTTTT
ACAAGGGAGGGGGAATGGGCTGGGGAGTGGGGAGTGGGGGAGGGATGGAG
AGGGTAGGAGTGTGACGATGGGGGCGAAGGAGCTGCTGGGAAGTTTGGTC
AGGGAGGTTGAGGTGCTGAGGGAGCAAGTGGAGCGTGCCAAGATGACCCG
AGAAGTGAACAGGCAAAGCGATCTTCTGGCATTCATTCGGGCGCTGCCGG
AGGATCAACAGCGGGCCTTGACTGAAAATATTCCTGATTACACGCTGGAT
TGCATGCGGAAGCTGGTCGATCTGGCCCTTGCTCGCGCCATTCCAACGGT
CGGAAATCAGTGGAGCCCCGCCACGCCTGTTCTTATCCCCAGTAAGAGCA
TTTTTGCGGAACTTTGTATTATGCAGGTCGTCCAGGGCTATCTGTTAGCG
GCGACAGAGGAGGACCAAGAACAGCAGTTGAAGCTGTTTGAGGGAGGGAC
GGGGGGAGGGAGTGGTGGTGGGGGAGGAGGGGATTTTCTGTAG
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Synonyms
Publications