NO02G04970, NO02G04970 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04970
Unique Name	NO02G04970
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4569
Alignment location	chr2:1333597..1338165 -

Link to JBrowse

Properties


Property Name	Value
Description	Transmembrane protein 30a

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1333597..1338165 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR005045	CDC50/LEM3_fam

Homology

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BLAST of NO02G04970 vs. NCBI_GenBank
Match: EWM30162.1 (transmembrane protein 30a [Nannochloropsis gaditana])

HSP 1 Score: 659.1 bits (1699), Expect = 1.100e-185
Identity = 311/397 (78.34%), Postives = 339/397 (85.39%), Query Frame = 0

Query:  104 ADDANGDTMPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTFAACQIEDPNAEGPLPPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRTINVEGVTKTLNPCGLIANSFFNDWYTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWKEQ 501
            A  +N DT+PLKSRKPEDTAFKQQRLPAWQP+LTPKWVIITFT++GL+F+PLGIVLKIQSDAIVEYSLQYDG+GT  + A CQI DPN     PPC VTFD+ REMKAPIY+YYQLDNFYQNHRRYVKSRSDAQLMGNVL  A LSDCDPLRTINV G T+ L+PCGLIANSFFNDWY L      P  L LD EGIAWESD+DRRFAQPDGFLA+PN  G DCD LLGT  G AV   + PP  +    A      P+PWCVFYPEP+KFFYL+QRYPFFPNL VEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSF +HPGFEV+SF+GRKHLV+STVSWFGGAN FLG+SYIVVG++CLFLAA+FGIKQATCPRKLGDTRYLGWKEQ
Sbjct:    2 AGQSNSDTVPLKSRKPEDTAFKQQRLPAWQPILTPKWVIITFTLVGLIFVPLGIVLKIQSDAIVEYSLQYDGEGTPESLADCQILDPNEASAHPPCTVTFDITREMKAPIYVYYQLDNFYQNHRRYVKSRSDAQLMGNVLSEAELSDCDPLRTINVAGETRVLSPCGLIANSFFNDWYVLASPPTGPANLTLDVEGIAWESDVDRRFAQPDGFLAEPNLAGADCDALLGTPPGQAVAATYTPPGGT----AGPLPPTPQPWCVFYPEPDKFFYLYQRYPFFPNLAVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFTVHPGFEVVSFSGRKHLVVSTVSWFGGANSFLGISYIVVGSLCLFLAALFGIKQATCPRKLGDTRYLGWKEQ 394

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BLAST of NO02G04970 vs. NCBI_GenBank
Match: GAX93721.1 (Hypothetical protein PINS_001616 [Pythium insidiosum])

HSP 1 Score: 330.1 bits (845), Expect = 1.200e-86
Identity = 193/430 (44.88%), Postives = 252/430 (58.60%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTF------AACQIE--------DPNAEGPLPPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDC-----------DPLRTINVEGVTKT--LNPCGLIANSFFNDWY----------TLDPSSDAPPGL----ILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWKEQ 501
            M  KSRKPEDT FKQQ+L AWQP+LTP WVI TF I+GL+F+P+GI+L  +S+ +VEYS+QYDG  T+P+       + C +E        D +A G    C++TF++++ MKAP+++YYQLDNFYQNHRRYV+SRSDAQL G  + +A+ SDC           D        G  KT  LNPCGLIANS FND +          TL    D   GL    +LD+  IAW+SD++ +F   D    +      +            +P               A G +PE     +  P K F               GV +EHFIVWMRTAGLP+FRKLYG+ID+DL AGT+L F++   F V +F+G+K LV+ST SWFGG N FLGV+YIVVG++C+ LA +F  K    PRKLGDTRYL  ++Q
Sbjct:    2 MEEKSRKPEDTPFKQQKLKAWQPILTPNWVIGTFAIVGLIFIPIGIILHTESENVVEYSVQYDGLNTEPSSNVVSLGSGCVLESAADADQFDVSARG----CLITFNIEKRMKAPVFVYYQLDNFYQNHRRYVQSRSDAQLRG--VASASTSDCNLMDKAVSKKYDSTGAALNNGAEKTYILNPCGLIANSLFNDIFWVNSITKDGRTLFQGDDYESGLKVVNLLDQSNIAWKSDIETKF---DNIPEKDRNEDKEMYLWQNPKYRFIIP--------------KAVGQLPEANKTAWTTPAKAF---------------GVKDEHFIVWMRTAGLPSFRKLYGRIDKDLEAGTKLQFLVSSNFLVKTFDGKKSLVISTTSWFGGRNPFLGVAYIVVGSLCMLLAILFFAKHKLSPRKLGDTRYLVMQQQ 393

[Close]

BLAST of NO02G04970 vs. NCBI_GenBank
Match: POM66622.1 (CMGC/CDK protein Kinase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 326.2 bits (835), Expect = 1.700e-85
Identity = 187/423 (44.21%), Postives = 239/423 (56.50%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGT----------DPTFAACQIEDPNAEGPLPPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRTINVEGVTK----------------TLNPCGLIANSFFND-------------WYTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYL 496
            M  KSRKPEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GIVL  +SD +VEYS+QYDG+G           D  + + + E    +     C +TF +++EMKAP+YLYYQLDNFYQNHRRYV+SRSDAQL G+    A+ SDC PL T    G++K                TL PCGLIANS FND             +Y  D         ++D+ GIAW+SD++ +F   D  LA  +    D D  +          +        P A   A     P                           GV +EHFIVWMRTAGLP+FRKLYG+ID DL  GT+L F++   F V +F G+K +V+ST SWFGG N FLG++YI+VGA+C+ LA +F  K    PRKLGDTRYL
Sbjct:    1 MDEKSRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGEGVTESSNIVDIGDGCYLSDEDEGDTFDVDTHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRRYVQSRSDAQLRGDA--TASTSDCSPLTTTGT-GISKYNSTEETAIGGNDTDYTLMPCGLIANSLFNDIFWVNKLVADGTTYYQNDTYEGKTLVNLVDQTGIAWKSDVETKFKNID--LADLS----DADNTMLLWQNPRYRYIIPMYEGQEPIANKTAWTTAAP-------------------------AYGVQDEHFIVWMRTAGLPSFRKLYGRIDTDLAEGTELEFLVSSNFVVSTFEGKKSIVISTTSWFGGRNPFLGIAYIIVGALCMVLAILFFAKHKLSPRKLGDTRYL 389

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BLAST of NO02G04970 vs. NCBI_GenBank
Match: OQR91037.1 (hypothetical protein ACHHYP_05042 [Achlya hypogyna])

HSP 1 Score: 325.9 bits (834), Expect = 2.200e-85
Identity = 193/440 (43.86%), Postives = 243/440 (55.23%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKG--TDPTFAACQIEDPNAEGPL-----------------PPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPL-----RTINVEGVTKT--------LNPCGLIANSFFND-------------W------YTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSS--LPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSR+PEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GI+L+++SD +VEYS+QYDG G  T       Q    NA G                     C++ F +D++MKAPIY+YYQLDNFYQNHRRYV SRSD QL G     ++LSDCDPL      T+  + ++ T        LNPCGLIANS FND             W      Y    SS      ++ + GIAW+SD+D +F                 D +           ++  PN    +PAA   A  + E     +  P+   Y              GV +EHFIVWMRTAGLP FRKLYG ID DLP GT L F++   F V SF G+K LVLST SWFGG N FLG++YI VG++C+ L+ +F  K    PRKLGDTRYL WK
Sbjct:    1 MDEKSRRPEDTPFKQQKLKAWQPILTPNWVIGTFFVVGLIFIPIGIILRVESDRVVEYSIQYDGAGALTAANGTQGQYTVVNAHGSTGCQLGKESDGNKFNLSQHSCLLRFTLDQDMKAPIYVYYQLDNFYQNHRRYVASRSDEQLRGT--QPSSLSDCDPLIHTPKNTLKYDSISNTAPENGTWQLNPCGLIANSMFNDIFWVNSITSPSGQWYGQVASYPTSSSSSVEVVNLMVQTGIAWQSDIDAKF-----------------DNIPAAQRLNTEMYLWQNPNYRYIIPAAVGQARVLNE---TAWTTPQSTAY--------------GVKSEHFIVWMRTAGLPNFRKLYGHIDSDLPKGTTLEFLVSSNFVVNSFEGKKSLVLSTTSWFGGRNPFLGIAYITVGSLCMVLSILFFAKHKLSPRKLGDTRYLVWK 404

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BLAST of NO02G04970 vs. NCBI_GenBank
Match: XP_008869913.1 (hypothetical protein H310_06573 [Aphanomyces invadans] >ETW00915.1 hypothetical protein H310_06573 [Aphanomyces invadans])

HSP 1 Score: 323.6 bits (828), Expect = 1.100e-84
Identity = 191/442 (43.21%), Postives = 245/442 (55.43%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKG---------------TDPTFAACQIEDPNAEG---PLPPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLR--------------TINVEGVTKTLNPCGLIANSFFNDWYTLD----PS------SDAPPGL------ILDEEGIAWESDLDRRF-------AQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSR+PEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GI+L+++SD +VEYS+QYDG G                +   AAC + D +          C++TF +D++MKAP ++YYQLDNFYQNHRRYV SRSD QL GN       SDCDP++              T+   G T  LNPCGLIANS FND + ++    PS      +D  PG       ++ + GIAW+SD+  +F        +PD      NP   +         G  +P V    N +     T A                                 GV +EHFIVWMRTAGLP FRKLYG+ID DLPAGT L F++   F V +F G+K LV+ST SWFGG N FLGV+YI VG++C+ L+ +F  K    PRKLGDTRYL WK
Sbjct:    1 MDEKSRRPEDTPFKQQKLKAWQPILTPNWVIGTFFVVGLIFIPIGIILRLESDNVVEYSIQYDGDGKLDGTAADSLTSIRSVNGAPAACALGDGDGNSFDLNRHGCLLTFKLDKDMKAPTFVYYQLDNFYQNHRRYVASRSDEQLRGN--QPGTRSDCDPMQMSPENTVKYADLHDTVGTNG-TWNLNPCGLIANSLFNDIFWINSVTTPSGARYTQTDTYPGTSVEVVNLMSQSGIAWKSDIASKFDNIKEADRRPDEMYLWQNPNYRNI-----IPKGPGIPRVL---NKTAWTTDTNAN-------------------------------YGVKSEHFIVWMRTAGLPNFRKLYGRIDTDLPAGTTLEFLVSSNFVVSAFEGKKSLVVSTTSWFGGRNPFLGVAYITVGSLCMVLSILFFAKHKLSPRKLGDTRYLVWK 400

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BLAST of NO02G04970 vs. NCBI_GenBank
Match: XP_008902435.1 (hypothetical protein PPTG_09291 [Phytophthora parasitica INRA-310] >ETI51612.1 hypothetical protein F443_05077 [Phytophthora parasitica P1569] >ETK91503.1 hypothetical protein L915_04944 [Phytophthora parasitica] >ETL44913.1 hypothetical protein L916_04891 [Phytophthora parasitica] >ETM51233.1 hypothetical protein L914_04895 [Phytophthora parasitica] >ETN12467.1 hypothetical protein PPTG_09291 [Phytophthora parasitica INRA-310] >ETO80367.1 hypothetical protein F444_05123 [Phytophthora parasitica P1976] >ETP21391.1 hypothetical protein F441_05082 [Phytophthora parasitica CJ01A1] >ETP49316.1 hypothetical protein F442_05140 [Phytophthora parasitica P10297] >KUF98479.1 hypothetical protein AM588_10011656 [Phytophthora nicotianae])

HSP 1 Score: 321.6 bits (823), Expect = 4.200e-84
Identity = 185/426 (43.43%), Postives = 237/426 (55.63%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTF------AACQIEDPNAEGPL-----PPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRT---------------INVEGVTKTLNPCGLIANSFFND-------------WYTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSRKPEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GIVL  +SD +VEYS+QYDG     +       + C + D  +EG         C +TF +++EMKAP+YLYYQLDNFYQNHRRYV+SRSDAQL G+    A+ SDC PL T               I       TL PCGLIANS FND             +Y  D         ++D+ GIAW+SD++ +F   D                L   +      + +             G  P+                 +  +  N    GV +EHFIVWMRTAGLP+FRKLYG+ID DL  GT+L F++   F V +F G+K +V+ST SWFGG N FLG++YI+VGA+C+ LA +F  K    PRKLGDTRYL WK
Sbjct:    1 MDEKSRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDDMTSSSNIVDQGSGCYLSD-ESEGDSFDVEEHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRRYVQSRSDAQLRGDA--TASTSDCSPLTTTGTGMYKYNSTAETAIGNNETDYTLMPCGLIANSLFNDIFWVNKLVTNGRTYYQNDTYEGKTLVNLVDQTGIAWKSDVETKFKNID----------------LNDLSDADNTMLLWQNPRYRYIIPMYEGQEPQT---------------NKTAWTTNAPAYGVQDEHFIVWMRTAGLPSFRKLYGRIDTDLAEGTELEFLVSSNFVVSTFEGKKSIVISTTSWFGGRNPFLGIAYIIVGALCMVLAILFFAKHKLSPRKLGDTRYLVWK 392

[Close]

BLAST of NO02G04970 vs. NCBI_GenBank
Match: ETL98067.1 (hypothetical protein L917_04791 [Phytophthora parasitica])

HSP 1 Score: 320.1 bits (819), Expect = 1.200e-83
Identity = 184/426 (43.19%), Postives = 237/426 (55.63%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTF------AACQIEDPNAEGPL-----PPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRT---------------INVEGVTKTLNPCGLIANSFFND-------------WYTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSRKPEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GIVL  +SD +VEYS+QYDG     +       + C + D  +EG         C ++F +++EMKAP+YLYYQLDNFYQNHRRYV+SRSDAQL G+    A+ SDC PL T               I       TL PCGLIANS FND             +Y  D         ++D+ GIAW+SD++ +F   D                L   +      + +             G  P+                 +  +  N    GV +EHFIVWMRTAGLP+FRKLYG+ID DL  GT+L F++   F V +F G+K +V+ST SWFGG N FLG++YI+VGA+C+ LA +F  K    PRKLGDTRYL WK
Sbjct:    1 MDEKSRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDDMTSSSNIVDQGSGCYLSD-ESEGDSFDVEEHGCRISFKIEKEMKAPVYLYYQLDNFYQNHRRYVQSRSDAQLRGDA--TASTSDCSPLTTTGTGMYKYNSTAETAIGNNETDYTLMPCGLIANSLFNDIFWVNKLVTNGRTYYQNDTYEGKTLVNLVDQTGIAWKSDVETKFKNID----------------LNDLSDADNTMLLWQNPRYRYIIPMYEGQEPQT---------------NKTAWTTNAPAYGVQDEHFIVWMRTAGLPSFRKLYGRIDTDLAEGTELEFLVSSNFVVSTFEGKKSIVISTTSWFGGRNPFLGIAYIIVGALCMVLAILFFAKHKLSPRKLGDTRYLVWK 392

[Close]

BLAST of NO02G04970 vs. NCBI_GenBank
Match: XP_009827409.1 (hypothetical protein H257_04541 [Aphanomyces astaci] >ETV82738.1 hypothetical protein H257_04541 [Aphanomyces astaci])

HSP 1 Score: 319.7 bits (818), Expect = 1.600e-83
Identity = 188/446 (42.15%), Postives = 241/446 (54.04%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKG------TDP---------TFAACQIEDP-------NAEGPLPPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLR--------------TINVEGVTKTLNPCGLIANSFFNDWYTLD----------PSSDAPPGL------ILDEEGIAWESDLDRRF-------AQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSR+PEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GI+L+++SD +VEYS+QYDG G       DP         T  AC + D        N  G    C+++F +D++MKAP ++YYQLDNFYQNHRRYV SRSD QL GN    +  SDCDP++               +   G T  LNPCGLIANS FND + ++            +D  PG       ++ + GIAW+SD+  +F        + D      NP   +                  P    LP          +    F                       GV +EHFIVWMRTAGLP FRKLYG+ID DLPAG+ L F++   F V +F G+K LVLST SWFGG N FLGV+YI VG++C+ L+ +F  K    PRKLGDTRYL WK
Sbjct:    1 MDEKSRRPEDTPFKQQKLKAWQPILTPNWVIGTFFVVGLIFIPIGIILRLESDNVVEYSIQYDGDGKLDSSTQDPVVSIRSVGGTPGACALGDGDGNTFDLNRHG----CLLSFKLDKDMKAPTFVYYQLDNFYQNHRRYVASRSDEQLRGN--QPSTRSDCDPMQMSPDNTVKYADLNDNVGTNG-TWNLNPCGLIANSLFNDIFWINSVTTPTGVRYTQTDTYPGTSLEVVNLMSQSGIAWKSDIASKFDNIKDTDRRADEMYLWQNPNYRN----------------IIPKGPGLPRVLNKTAWTSDTTANF-----------------------GVKSEHFIVWMRTAGLPNFRKLYGRIDTDLPAGSTLEFLVSSNFVVSAFEGKKSLVLSTTSWFGGRNPFLGVAYITVGSLCMVLSILFFAKHKLSPRKLGDTRYLVWK 400

[Close]

BLAST of NO02G04970 vs. NCBI_GenBank
Match: CCA23379.1 (hypothetical protein SELMODRAFT_270312 [Albugo laibachii Nc14])

HSP 1 Score: 319.3 bits (817), Expect = 2.100e-83
Identity = 186/428 (43.46%), Postives = 243/428 (56.78%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTF-------AACQIEDPNAEGPL----PPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRTINVEGVTKT-------------LNPCGLIANSFFND--------------WYTLDPSSDAPPGLI--LDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATA-AGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSRKPEDT FKQQRL AWQP+LTP WVI TF I+GL+F+P+G+VL  +S+ +VEYS+QYDGK T             C +E  +           C+VTF++++ MKAPI++YYQLDNFYQNHRRYV+SRSDAQL G+   +A+ SDC PL+TI+      T             LNPCGLIANS FND              +Y  D   +A   ++  L +  IAW++D+  +F                       AA  +   ++   N        A  G  P      +  P + F               GV  EHFIVWMRTAGLP+FRKLYG+ID DLPAG++L F++     + +F+G+K LV+ST SW GG N FLG++Y+VVG++C+ LA +F  K   CPRKLGDTRYL WK
Sbjct:    1 MEEKSRKPEDTPFKQQRLKAWQPILTPNWVIGTFFIVGLIFIPIGVVLHTESENVVEYSVQYDGKNTPSASENIANLGRGCYLETEDEGNTFNYTKRGCLVTFEIEKHMKAPIFVYYQLDNFYQNHRRYVQSRSDAQLRGDA--SASDSDCSPLKTISSVKYNSTKPSPLVSTPQTYRLNPCGLIANSLFNDIFWINSVALPNGKKYYQKDAFPNAETNVVNMLQQTDIAWKTDVRAKFKNI-------------------PAADRSDDNLYLWQNPKYRYIIPAYVGQPPIANATAWTSPSEAF---------------GVQAEHFIVWMRTAGLPSFRKLYGRIDVDLPAGSKLEFLVS---SITTFDGKKSLVISTTSWLGGRNPFLGIAYMVVGSICMVLAILFFAKHKLCPRKLGDTRYLVWK 389

[Close]

BLAST of NO02G04970 vs. NCBI_GenBank
Match: KUG01729.1 (Cyclin-dependent kinase 20 [Phytophthora nicotianae])

HSP 1 Score: 318.9 bits (816), Expect = 2.700e-83
Identity = 184/426 (43.19%), Postives = 237/426 (55.63%), Query Frame = 0

Query:  112 MPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGLVFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTF------AACQIEDPNAEGPL-----PPCVVTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSDCDPLRT---------------INVEGVTKTLNPCGLIANSFFND-------------WYTLDPSSDAPPGLILDEEGIAWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSLPAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVWMRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTVSWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWK 499
            M  KSRKPEDT FKQQ+L AWQP+LTP WVI TF ++GL+F+P+GIVL  +SD +VEYS+QYDG     +       + C + D  +EG         C +TF +++EMKAP+YLYYQLDNFYQNHRRYV+SRSDAQL G+    A+ SDC PL T               I       TL PCGLIANS FND             +Y  D         ++D+ GIAW+SD++ +F   D                L   +      + +             G  P+                 +  +  N    GV +EHFIVWMRTAGLP+FRKLYG+ID DL  GT+L F++   F V +F G+K +V+ST SWFGG N FLG++YI+VGA+C+ LA +F  K    PRKLGDTRYL +K
Sbjct:    1 MDEKSRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDDMTSSSNIVDQGSGCYLSD-ESEGDSFDVEEHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRRYVQSRSDAQLRGDA--TASTSDCSPLTTTGTGMYKYNSTAETAIGNNETDYTLMPCGLIANSLFNDIFWVNKLVTNGRTYYQNDTYEGKTLVNLVDQTGIAWKSDVETKFKNID----------------LNDLSDADNTMLLWQNPRYRYIIPMYEGQEPQT---------------NKTAWTTNAPAYGVQDEHFIVWMRTAGLPSFRKLYGRIDTDLAEGTELEFLVSSNFVVSTFEGKKSIVISTTSWFGGRNPFLGIAYIIVGALCMVLAILFFAKHKLSPRKLGDTRYLSFK 392

The following BLAST results are available for this feature:

BLAST of NO02G04970 vs. NCBI_GenBank

BLAST of NO02G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30162.1	1.100e-185	78.34	transmembrane protein 30a [Nannochloropsis gaditan...	[more]
GAX93721.1	1.200e-86	44.88	Hypothetical protein PINS_001616 [Pythium insidios...	[more]
POM66622.1	1.700e-85	44.21	CMGC/CDK protein Kinase [Phytophthora palmivora va...	[more]
OQR91037.1	2.200e-85	43.86	hypothetical protein ACHHYP_05042 [Achlya hypogyna...	[more]
XP_008869913.1	1.100e-84	43.21	hypothetical protein H310_06573 [Aphanomyces invad...	[more]
XP_008902435.1	4.200e-84	43.43	hypothetical protein PPTG_09291 [Phytophthora para...	[more]
ETL98067.1	1.200e-83	43.19	hypothetical protein L917_04791 [Phytophthora para...	[more]
XP_009827409.1	1.600e-83	42.15	hypothetical protein H257_04541 [Aphanomyces astac...	[more]
CCA23379.1	2.100e-83	43.46	hypothetical protein SELMODRAFT_270312 [Albugo lai...	[more]
KUG01729.1	2.700e-83	43.19	Cyclin-dependent kinase 20 [Phytophthora nicotiana...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007174	NSK007174	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G04970.1	NO02G04970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575279	gene_1089	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100096g5	gene478	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G04970.1	NO02G04970.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G04970 ID=NO02G04970|Name=NO02G04970|organism=Nannochloropsis oceanica|type=gene|length=4569bp
GAGACAGGGCGTTTGTGCTGCGGCTTGGGAGGGGGGGGTGGGGAGGGATT
TCGTGGTTTATCTTGATGCTGCTGCTGCCGTTGCGATGGCTGTTGTTGTG
GCTGCTGCTGCTGCTGCTGCTGTTGCTCGTGCGGCCGCATCACTTTTTGC
CTTTGGTGGGGGTAATTGGGCTTGGGCGGTGAAACTGGCCTTTGCCGTGA
TGCTCGTGGCGATGATCGATAAATATCACAGGACGCAGAAGGTAAAGCGG
GCGTAGAGGGAGGATAAAGCGTCACGTTCGTCGGGGGTACCACGCGAGGA
GGGGACGATGGTGGTGGAGAGGTGTCTAGGATCCTTTCAAAAGCAGAGCG
ACGGGTTGGGGTAGCCTGCACATGAGAGAATGTGATTACGCCTGCTTTTG
ACAAGGAAAGGAGGGAAGATCGACGACGCCGGGCATAATATTGCTGTCGT
TGATGCCGAGGGCTTTCCAAAAAAGGGGGCCCGGCAAAGGATGGATGGTC
ATGGGACATAGGAAATACGGCGTCCAAAAAATGTTGCGGCAATGCCAAGA
CCAGCTGCACCAGTTCAGGAAGAAGGTGTGTCTGAAAGAAAGCGTTTAAA
GCGTCGGAGTAGGGCGCTACCACGCGTGTGAGCGCTAGGTGCGGGAGGCG
GGTTTCGGGAAACGTAAGGGCGATGAGGAACGCTGCCTTGACCACATTGT
GGAACGGCAGCCATGACACAAGCCACTCCAGGGTGCATTCGAAGAGCTGC
ACAGCACCCAGCACCGTCCAAGCCGCCAGCAAGTCGGGACTAAGGGCAGA
AGGGGAGGGGGCGAAGCAGGGGGAATAGGAGGGGGGCCTAGCGTCTATGT
CCATGTCGTTCTCTTCCTCTTCTTCGACGCTCTCCTCAGCCAGAACCTTG
TAACTCTGCCAGCCTAAAGCCATGGCCGAGTATATGCTCGCAAGGGATGG
CAACAGGGCCATGAAAGCCTGTGGTAAGGGGGGTTTTGGTATGTGTTTTG
TTAGGAGCGAAATCAAAATGGCGAGGCGATTGCTTCTCACCTTCACACCT
TAACCCTGCATGCAAATTTAATCACACACATACATTGGCTCTCTAGAATG
TGTGCACAGGATTTGGTTGTCCCGACGGCACGGACGACGATCGACATGGA
CGGGCCTCGCCAACGATTTTTGAGCGAGCGCCATCATCTCAGGCCAGGCC
ATCCCTTTGCCATGCGCTCTTTCAAGAACCACACTCACAACGCCTCGCCC
ATGCAGTCCCTGCACACCCACACGTCTACAGGGACGAGTACATTTCAGGA
TACTGCATCGGCTTGCTGTAGGTCCAGCGCGTTCGCACACGCCCCCCCAC
AGTCAGACTTATCACAGACAGTCAATCCGCCATCATTAAACGGCACCATG
GCGGCTGCAGACGACGCAAATGGGGACACAATGCCCCTCAAGAGCCGCAA
GCCTGAAGgtatgttatcctaagcgtggaaaaggggagttcgaggcttgg
tttcggtctagatcggggcgcgtgttgaggagctagtggaagcatttatg
cttcggccttgctttccattccgcgcctcccgataatgcctggaaatgag
atgatgaacctcttacatcgggcataacttatccacaaagACACGGCATT
CAAGCAACAAAGGCTCCCTGCATGGCAGCCCCTCCTGACGCCCAAGTGGG
TCATCATCACATTTACGATCATTGgtacgtggccgttagatggcgtagac
ttcggtttgatatatttgttattccgtcattcccttctcctacgcttgct
ttcctccccgcttctccgttcactagtctgtgaatgccctctcgggctta
tctggatgcatactcccggactttccttgcttggcaaaaacaaaaaatga
tataaaaggctttgtgttcacctaccctcaccttaccctccctcttccca
cccctagGCCTGGTCTTTCTCCCCCTTGGCATCGTCCTCAAGATCCAATC
GGATGCCATCGTCGAGTATTCCTTGCAATATGATGGGAAAGGGACCGATC
CCACCTTCGCGGCCTGCCAGATCGAGGACCCCAATGCCGAGGGGCCTCTG
CCGCCCTGTGTCGTAACCTTTGACGTGGATAGGGAGATGAAGGCTCCAAT
CTACCTGTACTACCAGCTCGACAACTTTTATCAGgtacgtcatatggttc
tctatttccttcttgcctcctgttctccccgcgcacgggtttcgccctca
cgaagtcaaccaggttattattgactcccctccacccttccttcacatcc
ctctctacccctctctccctccctccctccctccctccctccctcccttt
tccctctccagAACCATCGTCGATACGTCAAATCCCGCTCTGACGCCCAG
CTCATGGGTAACGTGCTTCCCGCGGCTGCCTTGTCGGATTGTGACCCTCT
CCGGACCATAAACGTGGAGGgtaagtatcaggctatccactctccctccc
tccctccctccatccatccccccctccctccctccctccctccctttttt
atcgttccgatccctttgtttctggaatttccaacccagtcgattttcaa
cccctcttcctcccgccctctccttgacttcctacgaccagGTGTGACGA
AGACGTTGAATCCCTGCGGTCTGATCGCCAACAGCTTTTTCAACGACTGg
tacgtcctgtagagggagggagggaggaagaagaagagggaggaggtcca
agggggaggcgaaagaaataaagcccacaaagagatgtccgtatagatat
ctatatattcttgtccaccgcatgccccctccctgagagcattggctcct
ccccccccctccccccccaagatattcacacatagatctgtatatccttg
tccaccgcataccccctcccacctccaagatgtccatacatatatatcct
tgtccaccgcataccccctcccacaatcccaccccccacccagcccaacg
gcaccgtttagagccaaggaacatctcaacaaccccaccgtccccccccc
cccctcagGTACACCCTCGATCCCTCCTCCGACGCCCCCCCCGGGCTGAT
CCTCGATGAGGAGGGCATTGCCTGGGAAAGCGACCTGGATCGCCGTTTCG
CTCAGCCGGACGGTTTCCTCGCACAGCCCAATCCCGGCGGAGGAGACTGT
GACACCCTCCTCGGCACCGCCGCCGGAGGGGCAGTGCCAACCGTCTTTTT
CCCTCCCAATTCTTCCCTCCCTGCCGCTGCCACTGCTGCTGGTGCTGTGC
CTGAGCCATGGTGTGTTTTTTACCCTGAACCCGAAAAGTTTTTCTACCTC
TTTCAGCGATATCCTTTTTTCCCGAATTTGGGGGTGGAGgtaaagcggga
gggagggaaggaggaaagagggagtgagggagtgagggagtgagggaggg
caacctacccattattcttgttgtggaggtggagaaggacggggacgaag
gcgggatgtcgtaccatacgccacacgcccacgcttccctccctcccctc
tcttccgggcgtggcgaacaaatccgctggtctggcccttgacgacaaag
gcaaggccttaaaaccgatacctcaaccccccttccctcccttgttccct
ccttcacaccagGGCGTGACCAACGAACACTTCATCGTCTGGATGCGCAC
GGCCGGTCTCCCCACTTTCCGGAAACTTTACGGAAAGATCGACCAGGACC
TGCCGGCGGGGACACAACTGTCTTTTGTGATTCATCCAGgtatggaggga
gagaggaagggagggagggagggagggagggagggagtgtggaaaaggct
ggttagggagggagaccagtggtacggtttggctcctttggctcggccgc
ttctaatttatgaccacaagaagacttacacgcaccccaccctccttccc
tatccattcaccccctccctcgcctccatccctcagGCTTCGAAGTCCTC
TCGTTCAACGGAAGGAAGCACCTCGTCCTCTCCACTGTTTCATGGTTCGG
CGGTGCCAACGGCTTTCTGGGTGTATCCTACATCGTTGTCGGTGCGGTGT
GCCTATTTCTGGCTGCGGTCTTCGGGATTAAGCAAGCCACCTGCCCGCGC
AAGTTGGGGGACACTCGTTATTTGgtaagccaagagggagggagggaggg
agggagggtgggaaggtcaagaaagattctttaatgttttcatacatttc
ctatctgattttatacacagGGATGGAAAGAGCAATAAATTGTTAACAAG
CCGCAAGCACAAGAACGTTGATGAGAGCGGGAGCGCGCATGCGGGGAACG
TAGCGATTGAAGAGAAGGCCGGGCCGGGGAGGGGGCGGGGGGGGGGGAAC
CAGAAACAAAGTAGACAGAAATGGGGAAAGGTATTATTATGAAACCGCTC
CTTCGCCTGCATGCATGCATGTGGGAAGTGACACGCAGCACAAAAATGCT
GACAGCCGAGGGGATGGGAGATATTTTGGACCAAAGCTTGGAAGGGCGCG
TATGGGAGGGAAAAGGAGA

protein sequence of NO02G04970.1

>NO02G04970.1-protein ID=NO02G04970.1-protein|Name=NO02G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MCAQDLVVPTARTTIDMDGPRQRFLSERHHLRPGHPFAMRSFKNHTHNAS
PMQSLHTHTSTGTSTFQDTASACCRSSAFAHAPPQSDLSQTVNPPSLNGT
MAAADDANGDTMPLKSRKPEDTAFKQQRLPAWQPLLTPKWVIITFTIIGL
VFLPLGIVLKIQSDAIVEYSLQYDGKGTDPTFAACQIEDPNAEGPLPPCV
VTFDVDREMKAPIYLYYQLDNFYQNHRRYVKSRSDAQLMGNVLPAAALSD
CDPLRTINVEGVTKTLNPCGLIANSFFNDWYTLDPSSDAPPGLILDEEGI
AWESDLDRRFAQPDGFLAQPNPGGGDCDTLLGTAAGGAVPTVFFPPNSSL
PAAATAAGAVPEPWCVFYPEPEKFFYLFQRYPFFPNLGVEGVTNEHFIVW
MRTAGLPTFRKLYGKIDQDLPAGTQLSFVIHPGFEVLSFNGRKHLVLSTV
SWFGGANGFLGVSYIVVGAVCLFLAAVFGIKQATCPRKLGDTRYLGWKEQ
*

Synonyms

Publications