NO02G04880, NO02G04880 (gene) Nannochloropsis oceanica

Overview
NameNO02G04880
Unique NameNO02G04880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length381
Alignment locationchr2:1316724..1317104 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1316724..1317104 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_008909437.1 (hypothetical protein PPTG_14195 [Phytophthora parasitica INRA-310] >ETI40685.1 hypothetical protein F443_13997 [Phytophthora parasitica P1569] >ETN05462.1 hypothetical protein PPTG_14195 [Phytophthora parasitica INRA-310] >ETO69388.1 hypothetical protein F444_14023 [Phytophthora parasitica P1976] >KUF77423.1 hypothetical protein AM587_10003349 [Phytophthora nicotianae] >KUF88679.1 hypothetical protein AM588_10001894 [Phytophthora nicotianae])

HSP 1 Score: 90.1 bits (222), Expect = 5.300e-15
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   17 GPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL 113
            G  +S+NDY+LAI+ASK LE+LLE E+ A G+GLHEK+S V+   S +P   +R +R++AT+RN+LIHD E   + +R KFI  ++ +  EL  ++
Sbjct:    8 GYVHSNNDYQLAIEASKELEYLLEKEFNAHGQGLHEKVSSVE---SAIPVPTVRSIRYVATLRNRLIHDREMRALPDRQKFISKFDDAMVELNILI 100
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: ETK80795.1 (hypothetical protein L915_13627, partial [Phytophthora parasitica] >ETP10453.1 hypothetical protein F441_13921, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 90.1 bits (222), Expect = 5.300e-15
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   17 GPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL 113
            G  +S+NDY+LAI+ASK LE+LLE E+ A G+GLHEK+S V+   S +P   +R +R++AT+RN+LIHD E   + +R KFI  ++ +  EL  ++
Sbjct:   22 GYVHSNNDYQLAIEASKELEYLLEKEFNAHGQGLHEKVSSVE---SAIPVPTVRSIRYVATLRNRLIHDREMRALPDRQKFISKFDDAMVELNILI 114
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BLAST of NO02G04880 vs. NCBI_GenBank
Match: ETL34213.1 (hypothetical protein L916_13524, partial [Phytophthora parasitica] >ETL87489.1 hypothetical protein L917_13339, partial [Phytophthora parasitica] >ETM40716.1 hypothetical protein L914_13426, partial [Phytophthora parasitica] >ETP38619.1 hypothetical protein F442_13830, partial [Phytophthora parasitica P10297])

HSP 1 Score: 90.1 bits (222), Expect = 5.300e-15
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   17 GPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL 113
            G  +S+NDY+LAI+ASK LE+LLE E+ A G+GLHEK+S V+   S +P   +R +R++AT+RN+LIHD E   + +R KFI  ++ +  EL  ++
Sbjct:   22 GYVHSNNDYQLAIEASKELEYLLEKEFNAHGQGLHEKVSSVE---SAIPVPTVRSIRYVATLRNRLIHDREMRALPDRQKFISKFDDAMVELNILI 114
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BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_002998570.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69923.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 89.7 bits (221), Expect = 6.900e-15
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:   17 GPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL 113
            G  +S+NDY+LAI+ASK LE+LLE E+ A G+GLHEK+S V+   S +P   +R +RF+AT+RN+LIHD E   + +R KFI  +  +  EL  ++
Sbjct:    8 GFVHSNNDYQLAIEASKELEYLLEKEFNAHGQGLHEKVSSVE---SAIPIPTVRSIRFVATLRNRLIHDREMRALPDRQKFISRFNDAMVELNILI 100
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_005850694.1 (hypothetical protein CHLNCDRAFT_50396 [Chlorella variabilis] >EFN58592.1 hypothetical protein CHLNCDRAFT_50396 [Chlorella variabilis])

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-14
Identity = 42/90 (46.67%), Postives = 69/90 (76.67%), Query Frame = 0 
Query:   27 LAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRG 117
            + I+ASK+LE++LE   GAQGKGLHEK + VQ     +P+ L +++R+LATIRNKL+H+ +F  I +R +F+E+Y+ ++R+L+A++ + G
Sbjct:    1 MVIRASKDLEYILEAYLGAQGKGLHEKCTSVQRF---IPQPLQKKIRYLATIRNKLVHERDFHHIPDRPRFVESYQIAERDLRAVVAKHG 87
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BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_024579012.1 (hypothetical protein PHALS_12901 [Plasmopara halstedii] >CEG42643.1 hypothetical protein PHALS_12901 [Plasmopara halstedii])

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-14
Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 0 
Query:    5 GEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL 113
            G  L +  KFL    YS NDY+LAI+ASK LE++LE E+ A G+GLHEK+S ++ +   +P   +R +R++AT+RN+LIHD E   + +R  FI+ ++ +  EL  ++
Sbjct:    2 GNTLPSGKKFL----YSDNDYQLAIEASKELEYILESEFQAYGQGLHEKVSSIERA---IPVPTIRSIRYVATLRNRLIHDREMKALPDRQAFIKNFDNAMAELNILI 102
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: POM69215.1 (Hypothetical protein PHPALM_14521 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 86.7 bits (213), Expect = 5.800e-14
Identity = 42/96 (43.75%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQR 116
            YS+NDY+LAI+ SK LE+LLE E+ A G+GLHEK+S ++   S +P   +R +R++AT+RN+LIHD E   + +R  FI+ ++ +  EL  ++ ++
Sbjct:   11 YSANDYQLAIETSKELEYLLETEFNAHGQGLHEKVSSIE---SAIPVPTVRSIRYVATLRNRLIHDREMKALPDRQTFIKKFDDAMVELNILIEKK 103
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: POM72664.1 (Formin-2 domain containing hypothetical protein, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 86.7 bits (213), Expect = 5.800e-14
Identity = 42/96 (43.75%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQR 116
            YS+NDY+LAI+ SK LE+LLE E+ A G+GLHEK+S ++   S +P   +R +R++AT+RN+LIHD E   + +R  FI+ ++ +  EL  ++ ++
Sbjct:  257 YSTNDYQLAIETSKELEYLLETEFNAHGQGLHEKVSSIE---SAIPVPTVRSIRYVATLRNRLIHDREMKALPDRQTFIKKFDDAMVELNILIEKK 349
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: OWZ08164.1 (hypothetical protein PHMEG_00019340 [Phytophthora megakarya])

HSP 1 Score: 84.0 bits (206), Expect = 3.800e-13
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQR 116
            YS+NDY++AI+ SK LE+LLE E+ A G+GLHEK+S V+   S +P   +R +R++AT+RN+LIHD +   + +R  FI+ ++ +  EL  ++ ++
Sbjct:   11 YSNNDYQVAIETSKELEYLLETEFSAHGQGLHEKVSSVE---SAIPVPTVRSIRYVATLRNRLIHDRDMRALPDRLMFIKKFDDAMVELNILIEKK 103
[Close]
BLAST of NO02G04880 vs. NCBI_GenBank
Match: EJK65968.1 (hypothetical protein THAOC_13130 [Thalassiosira oceanica])

HSP 1 Score: 83.6 bits (205), Expect = 4.900e-13
Identity = 43/90 (47.78%), Postives = 69/90 (76.67%), Query Frame = 0 
Query:   23 NDYELAIKASKNLEHLLEHEWGA-QGK--GLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQ 110
            NDYEL I+A+K+LE+LLE  +GA  GK  GLH+KI++V +S+  L +D ++++R+L TIRNKL+HD  F K+ +R +F ++Y+  ++EL+
Sbjct:   16 NDYELVIRATKDLEYLLETGFGAPSGKTVGLHDKITFV-ESNHKLTQDTVKKLRYLVTIRNKLVHDRNFNKLPDRKQFAKSYDTVEKELK 104
The following BLAST results are available for this feature:
BLAST of NO02G04880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008909437.15.300e-1546.88hypothetical protein PPTG_14195 [Phytophthora para... [more]
ETK80795.15.300e-1546.88hypothetical protein L915_13627, partial [Phytopht... [more]
ETL34213.15.300e-1546.88hypothetical protein L916_13524, partial [Phytopht... [more]
XP_002998570.16.900e-1547.92conserved hypothetical protein [Phytophthora infes... [more]
XP_005850694.11.500e-1446.67hypothetical protein CHLNCDRAFT_50396 [Chlorella v... [more]
XP_024579012.12.600e-1442.59hypothetical protein PHALS_12901 [Plasmopara halst... [more]
POM69215.15.800e-1443.75Hypothetical protein PHPALM_14521 [Phytophthora pa... [more]
POM72664.15.800e-1443.75Formin-2 domain containing hypothetical protein, p... [more]
OWZ08164.13.800e-1342.71hypothetical protein PHMEG_00019340 [Phytophthora ... [more]
EJK65968.14.900e-1347.78hypothetical protein THAOC_13130 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007167NSK007167Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04880.1NO02G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575256gene_1082Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100090g5gene471Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04880.1NO02G04880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04880 ID=NO02G04880|Name=NO02G04880|organism=Nannochloropsis oceanica|type=gene|length=381bp
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG
GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA
ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG
CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA
CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC
ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG
TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC
TTCTCGAAGCAATGACTGTGCAATTATGTAA
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protein sequence of NO02G04880.1

>NO02G04880.1-protein ID=NO02G04880.1-protein|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGL
HEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIET
YERSKRELQAILVQRGSSRSNDCAIM*
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Synonyms
Publications