NO02G04630, NO02G04630 (gene) Nannochloropsis oceanica

Overview
NameNO02G04630
Unique NameNO02G04630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4432
Alignment locationchr2:1248000..1252431 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1248000..1252431 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G04630 vs. NCBI_GenBank
Match: XP_005852630.1 (hypothetical protein NGA_0731210 [Nannochloropsis gaditana CCMP526] >EKU23203.1 hypothetical protein NGA_0731210 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.5 bits (306), Expect = 1.700e-24
Identity = 86/217 (39.63%), Postives = 104/217 (47.93%), Query Frame = 0 
Query:    7 THQTSGAIRLRFLFANHDGVAVELSVLPSTRVVDVKHRLREVWPPALLNAERKNISGSNTTSNMRTPNGILSHNHHDSNSDY---QEEYWPESEDEDGVYXXXXXXXXXGTVASCSGAGLSASRWRAPEVDRLRLICMGQGLLKDSRTLQECHVPAFITHPTPVNXXXXXXXXXXXXXXXXXXXXXXXXKML-HDEEGLSERVGAVVPRGCVSCLIM 220
            T   S  I LRF+FANHDGV+VELSV    RV ++K RLRE WP  L          ++T+S      G +S  +  +  DY     EY  E ED                +     AG+S  R +APEV RLR ICMGQGLL+D+ TLQEC +P F THPTPVN                        K L  D  GL    G+ +P  CVSC IM
Sbjct:    8 TQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEEL---------HTDTSS-----GGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEKGRAIQ----AGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDREHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206
[Close]
BLAST of NO02G04630 vs. NCBI_GenBank
Match: EWM30352.1 (hypothetical protein Naga_100003g6 [Nannochloropsis gaditana])

HSP 1 Score: 122.5 bits (306), Expect = 1.700e-24
Identity = 86/217 (39.63%), Postives = 104/217 (47.93%), Query Frame = 0 
Query:    7 THQTSGAIRLRFLFANHDGVAVELSVLPSTRVVDVKHRLREVWPPALLNAERKNISGSNTTSNMRTPNGILSHNHHDSNSDY---QEEYWPESEDEDGVYXXXXXXXXXGTVASCSGAGLSASRWRAPEVDRLRLICMGQGLLKDSRTLQECHVPAFITHPTPVNXXXXXXXXXXXXXXXXXXXXXXXXKML-HDEEGLSERVGAVVPRGCVSCLIM 220
            T   S  I LRF+FANHDGV+VELSV    RV ++K RLRE WP  L          ++T+S      G +S  +  +  DY     EY  E ED                +     AG+S  R +APEV RLR ICMGQGLL+D+ TLQEC +P F THPTPVN                        K L  D  GL    G+ +P  CVSC IM
Sbjct:    8 TQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEEL---------HTDTSS-----GGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEEGRAIQ----AGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206
[Close]
BLAST of NO02G04630 vs. NCBI_GenBank
Match: OQR95936.1 (hypothetical protein THRCLA_22047 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 46/155 (29.68%), Postives = 60/155 (38.71%), Query Frame = 0 
Query:   14 IRLRFLFANHDGVAVELSVLPSTRVVDVKHRLREVWPPALLNAERKNISGSNTTSNMRTPNGILSHNHHDSNSDYQEEYWPESEDEDGVYXXXXXXXXXGTVASCSGAGLSASRWRAPEVDRLRLICMGQGLLKDSRTLQECHVPAFITHPTPVN 169
            I+++FLFANHDGV V L+V P  +V DVK  L  +WP                                      ++   PES                                    +  +R ICMG G L+D +TL+EC VP+F THPTPVN
Sbjct:    6 IQIKFLFANHDGVKVLLNVFPDRKVGDVKGTLLSMWP--------------------------------------EDVPRPES------------------------------------ISNIRFICMGLGALQDGKTLRECKVPSFPTHPTPVN 86
The following BLAST results are available for this feature:
BLAST of NO02G04630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005852630.11.700e-2439.63hypothetical protein NGA_0731210 [Nannochloropsis ... [more]
EWM30352.11.700e-2439.63hypothetical protein Naga_100003g6 [Nannochloropsi... [more]
OQR95936.11.100e-729.68hypothetical protein THRCLA_22047 [Thraustotheca c... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007140NSK007140Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04630.1NO02G04630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G04630.2NO02G04630.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575157gene_1057Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g6gene452Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04630.1NO02G04630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G04630.2NO02G04630.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04630 ID=NO02G04630|Name=NO02G04630|organism=Nannochloropsis oceanica|type=gene|length=4432bp
CCCCCCTTAAGGCCCATCCCGAACCTACCATGCACACCAAGGATGAAAGG
AGGGACCGCCGTCGCCCCTCCTCCTCCTCCTGCTGCTGTTGTCCTTGGGG
TAGATAAAGTTGTAGCTGCCGCTGATACCACTTGTCCTTCTGCTGATGGC
TCCCCTGCTGCCGCCGCAGCCGTCACCCGCTGCTGTTGCATCTCCTGTAA
ATACGCCTCCATTCCTTCTTCCCCTCCTTCCCTCCAATCCTCTCCTTCCT
CCTCCTCCTCCTCCTCGGGCAGGTCGCAAGCACAATAGCATAGATTGATG
CACCGTTTTAATTCGTACCTAATCATTGAAGACAACGTTTCATGGTAGCG
ATTTAACAGCCTCGATCCTTCCCCTCCCATGGCGATGCCGCTGTTGCTCC
TACTGCTGCTGCTGCTGCTGCAGAACAAACTCTCGTGCGGGCTTAAACAC
AACATATGAAGTTCCTTCGCATAGAAAGATGCCGCCACCGACAACTCGTT
CCACTGGGCCGTCTCTCCTAGAAGGGCTATGACCATAGACCCTATCCCAT
GCTGCTGCTGCTGCTGCTGCTGCTGTGCGGACGAGGATTGCGAGAGGGAC
TGAGCGAAAGTGCGTTTGCCACTATCCATGTCTGCTGCACCTGCTGTTCT
TGTCGCTACGGCTGCAGCAGAGGCCGCAGTGGAGAAGTCGTGTAAAACCT
GTACCAGCTTATCCAACCATTCCTTGGTGCTGCTGCTGCGTGTGCTCGCG
ATGGGGTCAGGAATGAGGGAGAAAGGGAGTGAGGATGGCGAGGAGGAAGA
AGCAGGCTTCATCGGCCCTCCCATGTGCTGGAGTTCCTGCTGCTGCTGCT
GTTGCTGGTCGATGGTCTCAGAATTCCACGCCGCAAACACCTGCTGTCGC
ACATTCTCCTTCCCCAAAAGTGGCACCTGATTCTCCCCCCCAGCTCGTCC
CCCTCCCTCCCTCGCTGCTACCATCGGCGACAGGGATGAAGACAACCGCC
CTCTTCCTCCTGCTGCTCGTGCTGCCGCACACTGCCCCCTCAACGTTTCT
GCGGCCTTGAGTGCCAGAAACAGGGAGGACAACACCCCCTCCATTGGTCG
GTCACTTCCATTCCGCTGCGGGTCTGGTGTGTCGACCACTGAGAGATCAT
ACGTCGAGAAGCTCACCCTCCTCCCCTTCGATTTCTTATTATTCCCTTTC
CTTTCGTCTCCTTTCTCTCTTTCTTCCTCCTGCTGCGTAGACAACCGTCG
CTTCCGTCCTGCGCCTACAAGCCCTCCAGTCAATGCTGAAGCTGCTGCTG
CTGCTGCTGCTGCGGCTGTGGGTGGTGGTGCTGCTGCTACAGCATTACTC
CCCATTGCCATCTCCCATTCCCCTCCCTTCCCTCCATCTCCACTCCTCGG
CATAGCCGCTGCTCTCTCCGCGTCCACCAACCGGGAGAGCAAGGTCAAGA
TGGCTTCAGGCACTTGGGCTTTTGCTTCCTTCTCAAGCACCTCGCCTACC
GCACCATCACATATGTGGTACGAGGAGGGCAACCCCAACACTTGTCCTAA
GGCAAATCGAAACATCTTACGCAGCGTGGAGGAACAGTCTTGGTCGTTTT
CACCAGTGGCAGCCCGCCATAAGCCGCCTTTCTCACCTCTATTATTGCGT
TGTTTTTGGCGGTGCTTTCGAACGCTGTTGACGGTCATTCTTAGGGTGCT
GTTCTGACTGCTGGCCAGCACTGCTGCTGCTGGTCCCGGTGGTGACAGGC
TTCGGACGACAGCAGCTGCTACTCTGGCTTGAGAGGGTGGACAGAGCATC
GCTGTAGAGACTTCTGGTTCTTGCTGATTTTGCTGGCGCTGTTGCTGCTC
GCGGCCGAGGCTCAGCTGGGTGGGGTCCTTCTCCCCGGCTGCGTCCGCGG
TGCCGCCAAAGCGGAACAGCTTCGCTGCCATGTTAAGCAATTGGGACGCT
ATGCTGGAAATATCGGTGTGGGATTGCTTGACAGGTCGTACGCGCTCTGT
GAACGGAGAGGGAGGGGTGAGGGAAAGGGATGAGAGTGCTGTGCCGGTAT
AATTATCAGTGAAGGCAGTTGGTCGACGAGACAAAGCGCGTCGGGCCCGG
GCGATGAATCTAGAGCAGGGTTCCCGGGGTGCGGGGGGGTAGACGCGTGT
GTGTGTCTGCCCACTGTGTGTAATGCTATTGACGATGGAATTCGAGTCAT
ATGCCTCCTTGTTGCACATGATAAAAGCTGCTTCTTGGAAGGGTTGCGAG
TGTATGCTCCCGCCCCATTAAGGACAGGCACATTATTATAGGGCTCTGTA
TCGACAGCGTGTGACACATGACAAAGATGCAAAGGTTATGGGCATGTCTC
TTTGGTTGTGGTGTGCGCGCTCGTATGATTAGGTATTCATCCACTTGTGC
CTTGTGCAGAAGGAAGCAAATGGGCGCGAAGGTGGACGTGACTCCAGTCC
TGCATCACTGCGTCATGCACCTCTTTCAAGACACGCCTTTTTTCAGTCAC
ATGCACCGTCTCAGTCCCTTCATTCCACGCACATGGACAGGACGAATCCA
AACGGCTCGAGGAGGACGGCAAGAAGCTTACCAGTGCCCAATTTGAGTCG
GTGGCCGCGGCATAATCAAATTTGTTCGGCTGCCGCTGTCCGCCCCCATA
CCTCTCCCCGTTCCGAGAACGTGCAAGTCGGCCCGGCAGCAACCTATCAC
TGAGAGCAGTACAAGAAACATGCCTTCAACCTCACCAACACACCAGACTT
CAGGCGCGATTCGTCTCAGgtacccgcttaaacgcatcaatgaatctgcc
ctttgcccttcgccggtcattctgtacatgagctcgcatgtattcgtttc
cttcacacaacaatcccctcgtccactctctctctctcactacctccatt
tttacgtgcgtttctcaatgtgtcacccgcacgatatcttggcggtaagt
gtctcacctcctatcccttgtcccccactcttcgctcccccaatcggcgg
cagGTTTCTTTTCGCCAATCACGACGGAGTGGCGGTAGAACTCTCTGTCT
TGCCCTCGACCAGGGTTGTGGACGTGAAGCATCGGCTCCGCGAAGTCTGG
CCTCCCGCCCTGCTGAACGCGGAACGGAAAAACATTTCCGGCAGCAATAC
CACAAGCAATATGCGCACGCCGAACGGCATCCTATCGCACAACCACCACG
ATTCCAATTCCGATTACCAAGAAGAATATTGGCCGGAATCGGAAGACGAG
GATGGCGTGTACGAAGACGAGGGAGAGGACGACGATGATGGAACGGTGGC
GTCGTGTTCTGGAGCTGGACTGTCGGCGAGTCGGTGGAGGGCCCCGGAAG
TGGATCGTTTGCGGTTAATTTGTATGGGGCAGGGTTTGCTGAAGGACAGT
CGGACATTGCAAGgtaatgatatcgggggtgggccgaaaggtgacggaga
agggaaggaggggggatgtatggatctggacacgcgtaaagattacagat
ggtatgtaggccgattctcactctctctttctcgtgacggatttcaacag
acctaccttctcacgcccgcccgttggttcgtccatccatgccacaacta
cgcagagctctcttttgactaattaaaccctctaccctctgacctacacc
aaaacatacagAGTGCCACGTTCCCGCTTTTATCACCCACCCGACGCCTG
TCAATGTCTCCATTCGCCCTCCGCCACCACGGCCGCCGGGGAAAGGGAAG
AAGGGCCTGCAGAAAAAGGAGAAAGAAAAGATGCTTCACGATGAGGAGGG
GTTGAGTGAGCGCGTGGGGGCGGTGGTCCCGAGGGGCTGCGTGTCATGCC
TCATCATGTAAACGAAGAGAAGGAAGACTCGGAGGAATGTGAGAGGCATT
ACTAGAAGGGTGGCGCGTTTTTGATATGCTTTGGGTGTGTGTGACATGCG
TGCGTGCCTTGCACCCACACTGTCCCTCTCCCCTGTGCCCCACACGGCCG
CGGCACAACCTGTCCGATAAATCGCACCACTAGAAAAATCATCCTGGTCT
GCATGTGCGTGTGTACGGAGACAAGATTGTCAGGGGTGGATTACTTAGGA
TGCACACTACAAGATAATATCGACCTACAAATGCATAAGAAGATAGCAGG
ACCTGCCAACCCTATCCCTAACAGCAGAGTGTCATTCTGCAGGTGGAAAG
CGGCCATTTGGGGCCGAGAAGAGGGTGGGAATGGAGAACGAGAAGGGAAG
CAGTAGCTGTGAATGTAAAGAGAGCAAGAGACATCGTGTGTCGGTACTAT
TCAAATAAAGGAAGTAGAAGGAAATTAAAAGTTCAAGAGAATGAGTGGGG
AGCTCTAGATAGACGGACGACAAATCAGAGCATTATCATTGTCATATTAC
AAAGCCATAACAAGGTTACGATGTGTCAAGAA
back to top

protein sequence of NO02G04630.1

>NO02G04630.1-protein ID=NO02G04630.1-protein|Name=NO02G04630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MPSTSPTHQTSGAIRLRFLFANHDGVAVELSVLPSTRVVDVKHRLREVWP
PALLNAERKNISGSNTTSNMRTPNGILSHNHHDSNSDYQEEYWPESEDED
GVYEDEGEDDDDGTVASCSGAGLSASRWRAPEVDRLRLICMGQGLLKDSR
TLQECHVPAFITHPTPVNVSIRPPPPRPPGKGKKGLQKKEKEKMLHDEEG
LSERVGAVVPRGCVSCLIM*
back to top

protein sequence of NO02G04630.2

>NO02G04630.2-protein ID=NO02G04630.2-protein|Name=NO02G04630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MPSTSPTHQTSGAIRLRYPLKRINESALCPSPVILYMSSHVFVSFTQQSP
RPLSLSHYLHFYVRFSMCHPHDILAVSVSPPIPCPPLFAPPIGGRFLFAN
HDGVAVELSVLPSTRVVDVKHRLREVWPPALLNAERKNISGSNTTSNMRT
PNGILSHNHHDSNSDYQEEYWPESEDEDGVYEDEGEDDDDGTVASCSGAG
LSASRWRAPEVDRLRLICMGQGLLKDSRTLQECHVPAFITHPTPVNVSIR
PPPPRPPGKGKKGLQKKEKEKMLHDEEGLSERVGAVVPRGCVSCLIM*
back to top
Synonyms
Publications