NO02G04620, NO02G04620 (gene) Nannochloropsis oceanica

Overview
NameNO02G04620
Unique NameNO02G04620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3292
Alignment locationchr2:1246639..1249930 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1246639..1249930 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G04620 vs. NCBI_GenBank
Match: EWM30278.1 (hypothetical protein Naga_100003g7 [Nannochloropsis gaditana])

HSP 1 Score: 187.2 bits (474), Expect = 2.500e-43
Identity = 100/177 (56.50%), Postives = 125/177 (70.62%), Query Frame = 0 
Query:  791 PASESAPTPTPAWWSLAESKGSEILGFLGAAAFLVRVLKDPVVVQAVNAGKWGRVERFAGMVSGVLGVVSEEDSLRSLADVGALQEDLYEALQAVHVVRQIMAATTPAEVLASVPPSHFAALAPRRKRKRVARVIKGAMRDVLIWVRSSELPEQATYPHLAPLCVYAT-AGIGYEEE 967
            P   SA    P WWSLA+++G  +L FLGAA+FL  VL  P VV+AV  GKWG+VERFAGMVSGVLGVVSE DSLR LADV  + E L    +    V+ ++  TTP +++A +P SH A L  RRKRKR +R +KG MRD+LIW+RS+ELP +  YP L PLCVYAT A +G+EE+
Sbjct:    3 PEPPSARARLPWWWSLADTQGENVLAFLGAASFLTYVLHMPTVVRAVEEGKWGKVERFAGMVSGVLGVVSENDSLRMLADVAGMTEQLDGMWRDAQRVQGVLRDTTPEDIVAVLPASHIAGLV-RRKRKRASRALKGQMRDILIWMRSNELPARVVYPLLTPLCVYATDALMGFEED 178
The following BLAST results are available for this feature:
BLAST of NO02G04620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30278.12.500e-4356.50hypothetical protein Naga_100003g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007138NSK007138Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04620.1NO02G04620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575150gene_1056Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g7gene451Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04620.1NO02G04620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04620 ID=NO02G04620|Name=NO02G04620|organism=Nannochloropsis oceanica|type=gene|length=3292bp
ATGGCAGCGAAGCTGTTCCGCTTTGGCGGCACCGCGGACGCAGCCGGGGA
GAAGGACCCCACCCAGCTGAGCCTCGGCCGCGAGCAGCAACAGCGCCAGC
AAAATCAGCAAGAACCAGAAGTCTCTACAGCGATGCTCTGTCCACCCTCT
CAAGCCAGAGTAGCAGCTGCTGTCGTCCGAAGCCTGTCACCACCGGGACC
AGCAGCAGCAGTGCTGGCCAGCAGTCAGAACAGCACCCTAAGAATGACCG
TCAACAGCGTTCGAAAGCACCGCCAAAAACAACGCAATAATAGAGGTGAG
AAAGGCGGCTTATGGCGGGCTGCCACTGGTGAAAACGACCAAGACTGTTC
CTCCACGCTGCGTAAGATGTTTCGATTTGCCTTAGGACAAGTGTTGGGGT
TGCCCTCCTCGTACCACATATGTGATGGTGCGGTAGGCGAGGTGCTTGAG
AAGGAAGCAAAAGCCCAAGTGCCTGAAGCCATCTTGACCTTGCTCTCCCG
GTTGGTGGACGCGGAGAGAGCAGCGGCTATGCCGAGGAGTGGAGATGGAG
GGAAGGGAGGGGAATGGGAGATGGCAATGGGGAGTAATGCTGTAGCAGCA
GCACCACCACCCACAGCCGCAGCAGCAGCAGCAGCAGCAGCTTCAGCATT
GACTGGAGGGCTTGTAGGCGCAGGACGGAAGCGACGGTTGTCTACGCAGC
AGGAGGAAGAAAGAGAGAAAGGAGACGAAAGGAAAGGGAATAATAAGAAA
TCGAAGGGGAGGAGGGTGAGCTTCTCGACGTATGATCTCTCAGTGGTCGA
CACACCAGACCCGCAGCGGAATGGAAGTGACCGACCAATGGAGGGGGTGT
TGTCCTCCCTGTTTCTGGCACTCAAGGCCGCAGAAACGTTGAGGGGGCAG
TGTGCGGCAGCACGAGCAGCAGGAGGAAGAGGGCGGTTGTCTTCATCCCT
GTCGCCGATGGTAGCAGCGAGGGAGGGAGGGGGACGAGCTGGGGGGGAGA
ATCAGGTGCCACTTTTGGGGAAGGAGAATGTGCGACAGCAGGTGTTTGCG
GCGTGGAATTCTGAGACCATCGACCAGCAACAGCAGCAGCAGCAGGAACT
CCAGCACATGGGAGGGCCGATGAAGCCTGCTTCTTCCTCCTCGCCATCCT
CACTCCCTTTCTCCCTCATTCCTGACCCCATCGCGAGCACACGCAGCAGC
AGCACCAAGGAATGGTTGGATAAGCTGGTACAGGTTTTACACGACTTCTC
CACTGCGGCCTCTGCTGCAGCCGTAGCGACAAGAACAGCAGGTGCAGCAG
ACATGGATAGTGGCAAACGCACTTTCGCTCAGTCCCTCTCGCAATCCTCG
TCCGCACAGCAGCAGCAGCAGCAGCAGCAGCATGGGATAGGGTCTATGGT
CATAGCCCTTCTAGGAGAGACGGCCCAGTGGAACGAGTTGTCGGTGGCGG
CATCTTTCTATGCGAAGGAACTTCATATGTTGTGTTTAAGCCCGCACGAG
AGTTTGTTCTGCAGCAGCAGCAGCAGCAGTAGGAGCAACAGCGGCATCGC
CATGGGAGGGGAAGGATCGAGGCTGTTAAATCGCTACCATGAAACGTTGT
CTTCAATGATTAGGTACGAATTAAAACGGTGCATCAATCTATGCTATTGT
GCTTGCGACCTGCCCGAGGAGGAGGAGGAGGAGGAAGGAGAGGATTGGAG
GGAAGGAGGGGAAGAAGGAATGGAGGCGTATTTACAGGAGATGCAACAGC
AGCGGGTGACGGCTGCGGCGGCAGCAGGGGAGCCATCAGCAGAAGGACAA
GTGGTATCAGCGGCAGCTACAACTTTATCTACCCCAAGGACAACAGCAGC
AGGAGGAGGAGGAGGGGCGACGGCGGTCCCTCCTTTCATCCTTGGTGTGC
ATGGTAGGTTCGGGATGGGCCTTAAGGGGGGGGAGGGAGGGGAAAATCTT
CGAAATTGCTGCTCAGCGATGCAGATTTTGGTGGAGACCGCGTCGAGTTT
ACAGTACAATAATGATGACCCTGCGGCACTGCTTCACTTTGCCCTGAGAA
AAGTATACTGCACACGCGGGCTGTGGACGGAGTTTTGTGGATTGGTTACT
GAGAGAGACAATGAGGGAGCAGCAGCTCCAGCAGCAGTTGTAGAAGGGGG
GCTGTTGCCGGCGGTCTTGGTGCCGGAGGGAGAGGAGGACAGAAATGTCG
GGCTGGTTTCTCCCCAAGCAGTGGCATCCAAGATCGAGGCAGGGAAGGAG
GACCAGGAGGAGCTCCAACAGCGGTATACACAGAAGGAGACGCAGGAGGA
GGAAGTGAAGGAGGAGCAGTGCCCACGACGGGTCATCCATAAGACCAATT
ATGGCACGCGAGTACCAGCACCCGCATCAGAGTCTGCACCGACACCGACA
CCGGCATGGTGGTCGCTGGCGGAGAGCAAAGGAAGCGAGATCCTGGGCTT
TCTGGGGGCTGCTGCCTTTTTGGTGCGTGTGCTGAAAGACCCGGTGGTTG
TTCAAGCGGTCAATGCCGGGAAATGGGGAAGGGTCGAGCGATTCGCCGGG
ATGGTTTCGGGAGTGTTGGGGGTTGTGTCGGAAGAGGACTCGTTACGGTC
TTTGGCAGACGTGGGGGCATTACAAGAGGACTTGTACGAGGCTTTACAGG
CAGTGCATGTAGTGAGGCAGATCATGGCGGCGACGACGCCCGCGGAGGTC
TTGGCATCTGTGCCGCCGTCGCATTTTGCGGCGTTGGCCCCGCGGAGGAA
GAGGAAGAGGGTGGCGAGGGTGATAAAGGGTGCGATGAGGGATGTTTTGA
TATGGGTGCGTTCCAGTGAGTTGCCGGAACAGGCGACGTATCCTCATTTG
GCTCCGTTGTGTGTGTATGCGACGGCGGGGATAGGGTATGAGGAAGAAAC
GGCGGACGATGGAGAGGATGAGGAAGGGGAGGAAGAGAACGAGGAGCTGG
ATGAGCAGCAGGAGCAGCAGGAGGAAGGGCAGGAGATGGTATTGTAACGG
ACGAGTCAGACAATCATTTCTCATACATAACCAAGACTGCGAGAGCAGCA
ATGAAGCAAACCAAGTAATTTGGCATTTTTATCATATTTGTATATTTGAT
ATACATATGTATATGAGTGGTGGAGTACAGCGCGTGCACGCAAAAAGCTC
GTACACGATCCAAGCACGATCCAAACACGACCACAACCTAAAATATAGCC
CGACCGAAAGCAAATCGAAATGACCCTTGGTTTATTTAACATGGTAGTTG
AAAGAAACTGACTCCAAGAAGAAAGTACACTAAATGAATGGG
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protein sequence of NO02G04620.1

>NO02G04620.1-protein ID=NO02G04620.1-protein|Name=NO02G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=999bp
MAAKLFRFGGTADAAGEKDPTQLSLGREQQQRQQNQQEPEVSTAMLCPPS
QARVAAAVVRSLSPPGPAAAVLASSQNSTLRMTVNSVRKHRQKQRNNRGE
KGGLWRAATGENDQDCSSTLRKMFRFALGQVLGLPSSYHICDGAVGEVLE
KEAKAQVPEAILTLLSRLVDAERAAAMPRSGDGGKGGEWEMAMGSNAVAA
APPPTAAAAAAAAASALTGGLVGAGRKRRLSTQQEEEREKGDERKGNNKK
SKGRRVSFSTYDLSVVDTPDPQRNGSDRPMEGVLSSLFLALKAAETLRGQ
CAAARAAGGRGRLSSSLSPMVAAREGGGRAGGENQVPLLGKENVRQQVFA
AWNSETIDQQQQQQQELQHMGGPMKPASSSSPSSLPFSLIPDPIASTRSS
STKEWLDKLVQVLHDFSTAASAAAVATRTAGAADMDSGKRTFAQSLSQSS
SAQQQQQQQQHGIGSMVIALLGETAQWNELSVAASFYAKELHMLCLSPHE
SLFCSSSSSSRSNSGIAMGGEGSRLLNRYHETLSSMIRYELKRCINLCYC
ACDLPEEEEEEEGEDWREGGEEGMEAYLQEMQQQRVTAAAAAGEPSAEGQ
VVSAAATTLSTPRTTAAGGGGGATAVPPFILGVHGRFGMGLKGGEGGENL
RNCCSAMQILVETASSLQYNNDDPAALLHFALRKVYCTRGLWTEFCGLVT
ERDNEGAAAPAAVVEGGLLPAVLVPEGEEDRNVGLVSPQAVASKIEAGKE
DQEELQQRYTQKETQEEEVKEEQCPRRVIHKTNYGTRVPAPASESAPTPT
PAWWSLAESKGSEILGFLGAAAFLVRVLKDPVVVQAVNAGKWGRVERFAG
MVSGVLGVVSEEDSLRSLADVGALQEDLYEALQAVHVVRQIMAATTPAEV
LASVPPSHFAALAPRRKRKRVARVIKGAMRDVLIWVRSSELPEQATYPHL
APLCVYATAGIGYEEETADDGEDEEGEEENEELDEQQEQQEEGQEMVL*
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Synonyms
Publications