NO02G04300, NO02G04300 (gene) Nannochloropsis oceanica

Overview
NameNO02G04300
Unique NameNO02G04300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1093
Alignment locationchr2:1165707..1166799 -

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Properties
Property NameValue
DescriptiontRNA pseudouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1165707..1166799 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
Homology
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_002294450.1 (hypothetical protein THAPSDRAFT_264420, partial [Thalassiosira pseudonana CCMP1335] >EED88284.1 hypothetical protein THAPSDRAFT_264420, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 147.9 bits (372), Expect = 5.200e-32
Identity = 102/290 (35.17%), Postives = 142/290 (48.97%), Query Frame = 0
Query:   30 RLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFD-----YPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE-------REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYY 307
            R+AY GT FNGWQ Q    TVQ E+E  L                 I  V AGRTDAGVHARGQ IHFD      P    T   +   +  +N  +P DIR++++  AP            WHA+  +  K Y+YR +   ++ +P +R TR        LD+++L  +  ++ GTHD+  F  +L    +    G+   T R V  V+L+++        EG YR+D  L GAL +MVRNM+G    V  G M+ ++L   L  P      +P + AP  GLT E VYY
Sbjct:    1 RVAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRR----------IPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEI--LQHSMNRMMPLDIRMFHLQLAP---------YTPWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRT---HFVHLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGKRINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIP--DRKDNPSKPAPPEGLTLECVYY 264          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005538008.1 (pseudouridylate synthase I [Cyanidioschyzon merolae strain 10D] >BAM81972.1 pseudouridylate synthase I [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 146.4 bits (368), Expect = 1.500e-31
Identity = 111/307 (36.16%), Postives = 148/307 (48.21%), Query Frame = 0
Query:   21 TVPMTRFVARLAYEGTHFNGWQYQVKSR---TVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYP--TVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPP--------RVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHK--RRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME----ADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            T  + R+ A +AY+GT F+G+Q Q KSR   T+Q  +E +L   L   P          + V AGRTDAGVHARGQVIHFD P    A +       E  LN  LP  I+V  +  +PPP        R   L     WHA+Y + GK Y YR S  +  DP   R   T  R +        +M   F GTHD+  FA+    K  R   ++    T +R       V      ++ +  LDGAL RM+RN+MG   +VARG+++     D L++   G      R  ++ APAHGL  E VYY D
Sbjct:   94 TENLVRYRAVVAYDGTDFHGFQRQAKSRATPTIQGRLEAALQQRLGGYPWH-------CQVVGAGRTDAGVHARGQVIHFDIPEQKAATSAFEPSRLEHALNRLLPRTIQVRAMEVSPPPAWYLVPSTRTYQLL---PWHAIYRAQGKRYVYRLSAGAWIDPLYHRYAYTDYR-QMQHWAVAQQMLQTFVGTHDFGAFASSPPGKADRHQIQRSTVRTIRRISVEPSPVDSIVPVWKFEFELDGALYRMIRNIMGTFLAVARGELDDALVVDALQQGSRGRALIAPR--VKPAPAHGLCLERVYYAD 387          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: EJK63370.1 (hypothetical protein THAOC_15973 [Thalassiosira oceanica])

HSP 1 Score: 143.3 bits (360), Expect = 1.300e-30
Identity = 116/361 (32.13%), Postives = 157/361 (43.49%), Query Frame = 0
Query:   25 TRFVARLAYEGTHFNGWQYQVKSR--TVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLG--------------------------EFEAGLNARLPPDIRVWNISHAP----PPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRV-------TVPRGEEL---------------DLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE----------------------REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            TRF +R+AY GTHF GWQ Q  S   T+Q E+E  L+                +  + AGRTDAGVHARGQ IHFD     +  + LG                          E +  ++  LP DIRV+N+  AP          L     WHAM +S  K Y+YRF    ++ +P +R TR         VP    L               D+  L  +  I+EGTHD+  F  ++  ++   + G +  T R +  V+LV+E                       EG +R+D  + GAL +MVRNM+G    V  G M  D+LR  L G      RS  + AP  GLT E VYY+D
Sbjct:  106 TRFRSRIAYCGTHFAGWQLQSNSNRSTIQGEIEGVLSQRFNRR----------VPVLGAGRTDAGVHARGQAIHFDLYPHELPFEPLGVPSIPGEIEATQPSDEELTKRLEFCTELQNSMSRMLPIDIRVFNLQVAPYTWTTTTDEGLPRPLLWHAMSSSTRKWYSYRFVLGPTLWNPTERFTRTHFVHRPYYVPEASSLSSSSGGDDAYALAEPDIAHLRSILEIYEGTHDFTAFGGQI--EQNEKRNGVKINTVRTIHKVELVREPMLNEDSRVATPLGKADLGFIGEEGNFRVDFLIQGALYKMVRNMVGTAIDVWLGRMSEDQLRELLAGATRKDNRS--KPAPPEGLTLECVYYED 452          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_017381489.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. TG-14])

HSP 1 Score: 142.5 bits (358), Expect = 2.200e-30
Identity = 94/285 (32.98%), Postives = 139/285 (48.77%), Query Frame = 0
Query:   24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            M R  A + Y+G  F G+Q Q  +RTVQ E+E+ L         + +   + +R VA+GRTDAGVHA GQVIHFD       +  +  ++  LN +LP DIRV ++               D+HA Y + GK+Y Y++    V  PF+R   V  P G   D+ ++ + A +F GTHD+ +F          S + E     R +  ++L++  E E  + +  DG L  MVR + G LW V  G  +  E+   L        +   + APA GL  E V+Y D
Sbjct:    1 MKRLKAIIMYDGFGFAGYQIQPNARTVQHELEKVL---------TKMHKGMKVRVVASGRTDAGVHAIGQVIHFD----TALQFPITRWQRALNVQLPGDIRVLSVEE----------VSSDFHARYGTIGKVYRYKWGLGDVESPFKRHYVVYAP-GFNPDIQRMREAAQLFLGTHDFTSFC---------SARTEVIDRVRTIKRLELIENDEDELHMVIEGDGFLYNMVRIIAGNLWEVGIGRRDPSEMSEMLAA---EDRKRAGKTAPAQGLYLESVFYVD 249          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005826980.1 (hypothetical protein GUITHDRAFT_113994 [Guillardia theta CCMP2712] >EKX40000.1 hypothetical protein GUITHDRAFT_113994 [Guillardia theta CCMP2712])

HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30
Identity = 91/243 (37.45%), Postives = 136/243 (55.97%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPP-PRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFT--TKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSV 266
            R+   + Y+GT++NG+Q Q    ++Q  +E  L+  L              R V AGRTD+GVH+RGQV+HFD  +  +T+  L +F+ G+N  LP D+++  + H      V +L     WHA+Y++  KLY+YR     V DP  R +R    R   +DLD L ++A++FEGTHD+  F+N          +G+  T  T R +  V +V E EG  RLD  LDGAL +MVRN++G + +V
Sbjct:   33 RYRCNVMYDGTNYNGFQLQHYQPSIQGLLETVLSRKLQRR----------TRVVGAGRTDSGVHSRGQVVHFD-SSENITD--LQKFQHGMNLMLPLDVKICGLEHVQDLDFVPHLNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYR--NVDLDLLREVAAMFEGTHDFSAFSN---------TRGDNSTMDTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAV 251          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: OEU20916.1 (pseudouridine synthase, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30
Identity = 99/314 (31.53%), Postives = 151/314 (48.09%), Query Frame = 0
Query:   30 RLAYEGTHFNGWQYQ------VKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFD--------YPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQG--------DWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRL-LHKRRMSKKGEEFTTKRYVASVQLVKEREGE-----------YRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPL---YPPGRSPIRAAPAHGLTCEWVYY 307
            R+AY+GT ++G+Q Q       ++ T+Q E+E+ L+             +  +R   A RTD GVHARGQ  HFD                    + E  +N  LP DIR+WNI  AP P    +   G        +W+AM  S GKLY+YR       +P  R  R  +P    +D D+L ++  ++EG+HD+  FA  +   +++    G   +T R +  +QLVKE + +           YR+D+ LDGAL +MVRN++G    V R  ++ +     L+ P         +P + AP+ GLT E V+Y
Sbjct:    1 RVAYDGTIYSGFQMQGGRPAEDQATTIQEELEQVLSQRF----------QRLVRVTGASRTDGGVHARGQAAHFDLYHNEXXXXXXXXXXXXXXXDLETCMNRMLPSDIRIWNI-QAPSPYEIPIEDTGKYIRPGIYNWNAMKTSTGKLYSYRICIGHAMNPLDRYNRWQLPWPTTIDTDRLEQILKLYEGSHDFICFAGAIEAQEKKTGIVGR--STVRNIQKIQLVKEVDSKMVDGSDPSSSYYRIDIYLDGALYKMVRNLIGTALDVCRNWLDEESFLDLLNRPSKLNLTRKNNPCKPAPSVGLTLERVFY 301          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_013924197.1 (tRNA pseudouridine(38-40) synthase TruA [Parachlamydia acanthamoebae] >CCB85148.1 tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae UV-7])

HSP 1 Score: 140.6 bits (353), Expect = 8.300e-30
Identity = 98/283 (34.63%), Postives = 136/283 (48.06%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            +F   LAY+GTH++GWQ Q  +  +Q  VE+ +   +   P         +R VA+GRTDAGVHARGQV HF        E +L  F   +N  LP DIRV +I   PP          D+HA Y+  GK Y Y  +   V  PF R     +   ++LDL +L   A +F GTHD+ +FAN        + +       R +  V ++ E EG  RL+   DG L +MVRNM+G L  VA G     ++            +   +AAP HGL    V + +
Sbjct:    4 KFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TDAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQAAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 249          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_036745976.1 (tRNA pseudouridine(38-40) synthase TruA [Parachlamydia acanthamoebae])

HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29
Identity = 98/283 (34.63%), Postives = 136/283 (48.06%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            +F   LAY+GTH++GWQ Q  +  +Q  VE+ +   +   P         +R VA+GRTDAGVHARGQV HF        E +L  F   +N  LP DIRV +I   PP          D+HA Y+  GK Y Y  +   V  PF R     +   ++LDL +L   A +F GTHD+ +FAN        + +       R +  V ++ E EG  RL+   DG L +MVRNM+G L  VA G     ++            +   +AAP HGL    V + +
Sbjct:    4 KFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TNAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQVAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 249          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: KIA76350.1 (tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae])

HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29
Identity = 100/296 (33.78%), Postives = 140/296 (47.30%), Query Frame = 0
Query:   13 PRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            P+ W     +   +F   LAY+GTH++GWQ Q  +  +Q  VE+ +   +   P         +R VA+GRTDAGVHARGQV HF        E +L  F   +N  LP DIRV +I   PP          D+HA Y+  GK Y Y  +   V  PF R     +   ++LDL +L   A +F GTHD+ +FAN        + +       R +  V ++ E EG  RL+   DG L +MVRNM+G L  VA G     ++            +   +AAP HGL    V + +
Sbjct:    7 PKRW----VIVSYKFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TDAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQAAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 261          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_019415654.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. TG20])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 93/285 (32.63%), Postives = 140/285 (49.12%), Query Frame = 0
Query:   24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            M R  A + Y+G  F G+Q Q+  RTVQLE+ER L         + +  +  ++ VA+GRTDAGVHA GQVIHFD       +  +  +   LN +LP DIRV ++               ++HA Y + GK+Y Y++S   V  PF+R   V  P G   ++ ++ + A  F GTHD+ +F          S + E     R +  ++L++  + E  + +  DG L  MVR + G LW V  G  E  E+   L   +    +   + APA GL  E V+Y +
Sbjct:    1 MKRLKAVIMYDGYGFAGYQIQLNERTVQLELERVL---------AKMHKRNNVKVVASGRTDAGVHATGQVIHFD----TDLQFPVNRWVRALNTQLPGDIRVISVEE----------VSNEFHARYGTIGKVYRYKWSLSDVESPFKRNYVVHTP-GVRPNIQRMREAAQAFLGTHDFTSFC---------SARTEVVDRVRTIKRLELLESDQDELHMVIEGDGFLYNMVRIIAGNLWEVGIGKREPAEMASLL---VAVNRKRAGKTAPARGLYLESVFYSE 249          
The following BLAST results are available for this feature:
BLAST of NO02G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002294450.15.200e-3235.17hypothetical protein THAPSDRAFT_264420, partial [T... [more]
XP_005538008.11.500e-3136.16pseudouridylate synthase I [Cyanidioschyzon merola... [more]
EJK63370.11.300e-3032.13hypothetical protein THAOC_15973 [Thalassiosira oc... [more]
WP_017381489.12.200e-3032.98tRNA pseudouridine(38-40) synthase TruA [Paenispor... [more]
XP_005826980.14.900e-3037.45hypothetical protein GUITHDRAFT_113994 [Guillardia... [more]
OEU20916.14.900e-3031.53pseudouridine synthase, partial [Fragilariopsis cy... [more]
WP_013924197.18.300e-3034.63tRNA pseudouridine(38-40) synthase TruA [Parachlam... [more]
WP_036745976.11.100e-2934.63tRNA pseudouridine(38-40) synthase TruA [Parachlam... [more]
KIA76350.11.100e-2933.78tRNA pseudouridine synthase A 1 [Parachlamydia aca... [more]
WP_019415654.11.400e-2932.63tRNA pseudouridine(38-40) synthase TruA [Paenispor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007092NSK007092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04300.1NO02G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575043gene_1019Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g47gene419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04300.1NO02G04300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04300 ID=NO02G04300|Name=NO02G04300|organism=Nannochloropsis oceanica|type=gene|length=1093bp
ATGAGACCATCACGACCTCGCCGgtaagactcacacgaagacgacctcca
atgtcatgacgactgaagtaaagaagtggtcgtcccgatggagtcaggag
ctaagcttttgcctgctcctgctcgcaagtattgtaagagtagacgcttg
gcaggagatcagccctcacatgtcgacctctctcagTACGGACTATACAC
CTAGGCCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCT
CGGCTTGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAA
AAGCCGGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCG
CCACCAGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTT
GCCGCAGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCA
TTTTGATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTG
AAGCAGGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATC
TCTCATGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTG
GCATGCGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCA
CTCGTTCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCT
CGAGGGGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTT
TGAAGGCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACACAAAC
GAAGGATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCC
TCCGTACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCG
TCTGGACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTAT
GGTCGGTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTG
GACGGTCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGC
GCATGGGCTGACGTGTGAATGGGTGTATTACGACGATTATTGA
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protein sequence of NO02G04300.1

>NO02G04300.1-protein ID=NO02G04300.1-protein|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRPSRPRRTDYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTV
QLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYP
TVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMY
NSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTH
DYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGA
LQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLT
CEWVYYDDY*
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Synonyms
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