NO02G04300, NO02G04300 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_002294450.1 (hypothetical protein THAPSDRAFT_264420, partial [Thalassiosira pseudonana CCMP1335] >EED88284.1 hypothetical protein THAPSDRAFT_264420, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 147.9 bits (372), Expect = 5.200e-32 Identity = 102/290 (35.17%), Postives = 142/290 (48.97%), Query Frame = 0 Query: 30 RLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFD-----YPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE-------REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYY 307 R+AY GT FNGWQ Q TVQ E+E L I V AGRTDAGVHARGQ IHFD P T + + +N +P DIR++++ AP WHA+ + K Y+YR + ++ +P +R TR LD+++L + ++ GTHD+ F +L + G+ T R V V+L+++ EG YR+D L GAL +MVRNM+G V G M+ ++L L P +P + AP GLT E VYY Sbjct: 1 RVAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRR----------IPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEI--LQHSMNRMMPLDIRMFHLQLAP---------YTPWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRT---HFVHLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGKRINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIP--DRKDNPSKPAPPEGLTLECVYY 264
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005538008.1 (pseudouridylate synthase I [Cyanidioschyzon merolae strain 10D] >BAM81972.1 pseudouridylate synthase I [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 146.4 bits (368), Expect = 1.500e-31 Identity = 111/307 (36.16%), Postives = 148/307 (48.21%), Query Frame = 0 Query: 21 TVPMTRFVARLAYEGTHFNGWQYQVKSR---TVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYP--TVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPP--------RVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHK--RRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME----ADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 T + R+ A +AY+GT F+G+Q Q KSR T+Q +E +L L P + V AGRTDAGVHARGQVIHFD P A + E LN LP I+V + +PPP R L WHA+Y + GK Y YR S + DP R T R + +M F GTHD+ FA+ K R ++ T +R V ++ + LDGAL RM+RN+MG +VARG+++ D L++ G R ++ APAHGL E VYY D Sbjct: 94 TENLVRYRAVVAYDGTDFHGFQRQAKSRATPTIQGRLEAALQQRLGGYPWH-------CQVVGAGRTDAGVHARGQVIHFDIPEQKAATSAFEPSRLEHALNRLLPRTIQVRAMEVSPPPAWYLVPSTRTYQLL---PWHAIYRAQGKRYVYRLSAGAWIDPLYHRYAYTDYR-QMQHWAVAQQMLQTFVGTHDFGAFASSPPGKADRHQIQRSTVRTIRRISVEPSPVDSIVPVWKFEFELDGALYRMIRNIMGTFLAVARGELDDALVVDALQQGSRGRALIAPR--VKPAPAHGLCLERVYYAD 387
BLAST of NO02G04300 vs. NCBI_GenBank
Match: EJK63370.1 (hypothetical protein THAOC_15973 [Thalassiosira oceanica]) HSP 1 Score: 143.3 bits (360), Expect = 1.300e-30 Identity = 116/361 (32.13%), Postives = 157/361 (43.49%), Query Frame = 0 Query: 25 TRFVARLAYEGTHFNGWQYQVKSR--TVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLG--------------------------EFEAGLNARLPPDIRVWNISHAP----PPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRV-------TVPRGEEL---------------DLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE----------------------REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 TRF +R+AY GTHF GWQ Q S T+Q E+E L+ + + AGRTDAGVHARGQ IHFD + + LG E + ++ LP DIRV+N+ AP L WHAM +S K Y+YRF ++ +P +R TR VP L D+ L + I+EGTHD+ F ++ ++ + G + T R + V+LV+E EG +R+D + GAL +MVRNM+G V G M D+LR L G RS + AP GLT E VYY+D Sbjct: 106 TRFRSRIAYCGTHFAGWQLQSNSNRSTIQGEIEGVLSQRFNRR----------VPVLGAGRTDAGVHARGQAIHFDLYPHELPFEPLGVPSIPGEIEATQPSDEELTKRLEFCTELQNSMSRMLPIDIRVFNLQVAPYTWTTTTDEGLPRPLLWHAMSSSTRKWYSYRFVLGPTLWNPTERFTRTHFVHRPYYVPEASSLSSSSGGDDAYALAEPDIAHLRSILEIYEGTHDFTAFGGQI--EQNEKRNGVKINTVRTIHKVELVREPMLNEDSRVATPLGKADLGFIGEEGNFRVDFLIQGALYKMVRNMVGTAIDVWLGRMSEDQLRELLAGATRKDNRS--KPAPPEGLTLECVYYED 452
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_017381489.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. TG-14]) HSP 1 Score: 142.5 bits (358), Expect = 2.200e-30 Identity = 94/285 (32.98%), Postives = 139/285 (48.77%), Query Frame = 0 Query: 24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 M R A + Y+G F G+Q Q +RTVQ E+E+ L + + + +R VA+GRTDAGVHA GQVIHFD + + ++ LN +LP DIRV ++ D+HA Y + GK+Y Y++ V PF+R V P G D+ ++ + A +F GTHD+ +F S + E R + ++L++ E E + + DG L MVR + G LW V G + E+ L + + APA GL E V+Y D Sbjct: 1 MKRLKAIIMYDGFGFAGYQIQPNARTVQHELEKVL---------TKMHKGMKVRVVASGRTDAGVHAIGQVIHFD----TALQFPITRWQRALNVQLPGDIRVLSVEE----------VSSDFHARYGTIGKVYRYKWGLGDVESPFKRHYVVYAP-GFNPDIQRMREAAQLFLGTHDFTSFC---------SARTEVIDRVRTIKRLELIENDEDELHMVIEGDGFLYNMVRIIAGNLWEVGIGRRDPSEMSEMLAA---EDRKRAGKTAPAQGLYLESVFYVD 249
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005826980.1 (hypothetical protein GUITHDRAFT_113994 [Guillardia theta CCMP2712] >EKX40000.1 hypothetical protein GUITHDRAFT_113994 [Guillardia theta CCMP2712]) HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30 Identity = 91/243 (37.45%), Postives = 136/243 (55.97%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPP-PRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFT--TKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSV 266 R+ + Y+GT++NG+Q Q ++Q +E L+ L R V AGRTD+GVH+RGQV+HFD + +T+ L +F+ G+N LP D+++ + H V +L WHA+Y++ KLY+YR V DP R +R R +DLD L ++A++FEGTHD+ F+N +G+ T T R + V +V E EG RLD LDGAL +MVRN++G + +V Sbjct: 33 RYRCNVMYDGTNYNGFQLQHYQPSIQGLLETVLSRKLQRR----------TRVVGAGRTDSGVHSRGQVVHFD-SSENITD--LQKFQHGMNLMLPLDVKICGLEHVQDLDFVPHLNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYR--NVDLDLLREVAAMFEGTHDFSAFSN---------TRGDNSTMDTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAV 251
BLAST of NO02G04300 vs. NCBI_GenBank
Match: OEU20916.1 (pseudouridine synthase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30 Identity = 99/314 (31.53%), Postives = 151/314 (48.09%), Query Frame = 0 Query: 30 RLAYEGTHFNGWQYQ------VKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFD--------YPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQG--------DWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRL-LHKRRMSKKGEEFTTKRYVASVQLVKEREGE-----------YRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPL---YPPGRSPIRAAPAHGLTCEWVYY 307 R+AY+GT ++G+Q Q ++ T+Q E+E+ L+ + +R A RTD GVHARGQ HFD + E +N LP DIR+WNI AP P + G +W+AM S GKLY+YR +P R R +P +D D+L ++ ++EG+HD+ FA + +++ G +T R + +QLVKE + + YR+D+ LDGAL +MVRN++G V R ++ + L+ P +P + AP+ GLT E V+Y Sbjct: 1 RVAYDGTIYSGFQMQGGRPAEDQATTIQEELEQVLSQRF----------QRLVRVTGASRTDGGVHARGQAAHFDLYHNEXXXXXXXXXXXXXXXDLETCMNRMLPSDIRIWNI-QAPSPYEIPIEDTGKYIRPGIYNWNAMKTSTGKLYSYRICIGHAMNPLDRYNRWQLPWPTTIDTDRLEQILKLYEGSHDFICFAGAIEAQEKKTGIVGR--STVRNIQKIQLVKEVDSKMVDGSDPSSSYYRIDIYLDGALYKMVRNLIGTALDVCRNWLDEESFLDLLNRPSKLNLTRKNNPCKPAPSVGLTLERVFY 301
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_013924197.1 (tRNA pseudouridine(38-40) synthase TruA [Parachlamydia acanthamoebae] >CCB85148.1 tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae UV-7]) HSP 1 Score: 140.6 bits (353), Expect = 8.300e-30 Identity = 98/283 (34.63%), Postives = 136/283 (48.06%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 +F LAY+GTH++GWQ Q + +Q VE+ + + P +R VA+GRTDAGVHARGQV HF E +L F +N LP DIRV +I PP D+HA Y+ GK Y Y + V PF R + ++LDL +L A +F GTHD+ +FAN + + R + V ++ E EG RL+ DG L +MVRNM+G L VA G ++ + +AAP HGL V + + Sbjct: 4 KFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TDAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQAAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 249
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_036745976.1 (tRNA pseudouridine(38-40) synthase TruA [Parachlamydia acanthamoebae]) HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29 Identity = 98/283 (34.63%), Postives = 136/283 (48.06%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 +F LAY+GTH++GWQ Q + +Q VE+ + + P +R VA+GRTDAGVHARGQV HF E +L F +N LP DIRV +I PP D+HA Y+ GK Y Y + V PF R + ++LDL +L A +F GTHD+ +FAN + + R + V ++ E EG RL+ DG L +MVRNM+G L VA G ++ + +AAP HGL V + + Sbjct: 4 KFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TNAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQVAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 249
BLAST of NO02G04300 vs. NCBI_GenBank
Match: KIA76350.1 (tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae]) HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29 Identity = 100/296 (33.78%), Postives = 140/296 (47.30%), Query Frame = 0 Query: 13 PRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 P+ W + +F LAY+GTH++GWQ Q + +Q VE+ + + P +R VA+GRTDAGVHARGQV HF E +L F +N LP DIRV +I PP D+HA Y+ GK Y Y + V PF R + ++LDL +L A +F GTHD+ +FAN + + R + V ++ E EG RL+ DG L +MVRNM+G L VA G ++ + +AAP HGL V + + Sbjct: 7 PKRW----VIVSYKFKITLAYDGTHYSGWQIQPNALAIQEIVEKEI-GKIVRQP---------VRVVASGRTDAGVHARGQVAHFS----TDAEIDLRRFLVSINGLLPKDIRVKDICQVPP----------DFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHI--RQKLDLSQLQAAAQLFVGTHDFTSFANE-------AHREHPQNAVRTIKRVDVIMEDEG-CRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAA---KDRKKAGKAAPPHGLFLHQVNFPE 261
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_019415654.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. TG20]) HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29 Identity = 93/285 (32.63%), Postives = 140/285 (49.12%), Query Frame = 0 Query: 24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 M R A + Y+G F G+Q Q+ RTVQLE+ER L + + + ++ VA+GRTDAGVHA GQVIHFD + + + LN +LP DIRV ++ ++HA Y + GK+Y Y++S V PF+R V P G ++ ++ + A F GTHD+ +F S + E R + ++L++ + E + + DG L MVR + G LW V G E E+ L + + + APA GL E V+Y + Sbjct: 1 MKRLKAVIMYDGYGFAGYQIQLNERTVQLELERVL---------AKMHKRNNVKVVASGRTDAGVHATGQVIHFD----TDLQFPVNRWVRALNTQLPGDIRVISVEE----------VSNEFHARYGTIGKVYRYKWSLSDVESPFKRNYVVHTP-GVRPNIQRMREAAQAFLGTHDFTSFC---------SARTEVVDRVRTIKRLELLESDQDELHMVIEGDGFLYNMVRIIAGNLWEVGIGKREPAEMASLL---VAVNRKRAGKTAPARGLYLESVFYSE 249 The following BLAST results are available for this feature:
BLAST of NO02G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G04300 ID=NO02G04300|Name=NO02G04300|organism=Nannochloropsis oceanica|type=gene|length=1093bpback to top protein sequence of NO02G04300.1 >NO02G04300.1-protein ID=NO02G04300.1-protein|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bpback to top Synonyms
Publications
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