NO02G04000, NO02G04000 (gene) Nannochloropsis oceanica

Overview
NameNO02G04000
Unique NameNO02G04000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1012
Alignment locationchr2:1092224..1093235 +

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme catalytic domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1092224..1093235 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO02G04000 vs. NCBI_GenBank
Match: EWM30326.1 (ubiquitin-conjugating enzyme catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 329.3 bits (843), Expect = 1.100e-86
Identity = 153/170 (90.00%), Postives = 162/170 (95.29%), Query Frame = 0
Query:   46 ATEEGMVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRG 216
            ATE G VSI+GIGGKSV+ +QSKGRRRQPAE+RIQKDLAEVELGTAATL FPNPNDLTDF+VE+ PESGFWTGA+F F+FRFPAEYPHTPPKV CQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRAD RQFER+VKQTLRG
Sbjct:  628 ATENGTVSIMGIGGKSVKAAQSKGRRRQPAELRIQKDLAEVELGTAATLIFPNPNDLTDFIVEVSPESGFWTGAKFTFTFRFPAEYPHTPPKVTCQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADARQFERVVKQTLRG 797          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: XP_002183463.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45163.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 235.7 bits (600), Expect = 1.700e-58
Identity = 104/173 (60.12%), Postives = 134/173 (77.46%), Query Frame = 0
Query:   48 EEGMVSILGIGG-KSVRTSQSKG-RRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            +   VS+LG+GG K  +  + K  ++R P EIRIQKD+AE++ G  AT+ FPN NDLT F V I P+SG+W GA + F+F  P  YPH+PPKV CQT+I HPNID +G VCLNILRE+WKP+LD+N ++YGL++LF EPNPDDPLN EAAELFR D+RQFER+V +TLRG ++
Sbjct:   39 DNNKVSLLGVGGKKQTKNGECKATKKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPKVECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGIL 211          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: CBN73839.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 233.4 bits (594), Expect = 8.500e-58
Identity = 102/171 (59.65%), Postives = 137/171 (80.12%), Query Frame = 0
Query:   50 GMVSILGIGGKSVRTSQSK--GRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            G + +LGIGG+  +   +K  G ++ P EIRIQKD+A+++ G+ A +TFPNPN+LT F V++ P+SGFW GA + F+F  PA YPH PPKV+C+T+I HPNI+ +GNVCLNILRE+WKP+LD+NA+IYGL++LF EPNP+DPLN EAAEL+R +I QFER VK+TL G V+
Sbjct:   24 GKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVM 194          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: BAO65811.1 (ubiquitin conjugating enzyme 12 [Ciliophrys infusionum])

HSP 1 Score: 229.6 bits (584), Expect = 1.200e-56
Identity = 106/169 (62.72%), Postives = 135/169 (79.88%), Query Frame = 0
Query:   48 EEGMVSIL-GIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRG 216
            E G +S++ GIGG++V T + K ++R P EIRIQKD+AE++ GT A   FP+ +DLT F V I P+SGFW GA ++FSF  PA+YPH  PKV+C TRI HPNI+ EGNVCLNILRE+WKP+LD+NA+IYGL++LF EPNPDDPLN EAA+LFR +I  FER V++TLRG
Sbjct:   34 EHGPISVVDGIGGEAVNTGKKK-KKRTPGEIRIQKDIAELDGGTVARHEFPSNSDLTKFFVIITPDSGFWRGATYRFSFTIPAQYPHEAPKVLCLTRIYHPNINLEGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRTNIASFERTVQRTLRG 201          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: GAX22876.1 (ubiquitin-conjugating enzyme E2 M [Fistulifera solaris])

HSP 1 Score: 227.6 bits (579), Expect = 4.700e-56
Identity = 104/176 (59.09%), Postives = 134/176 (76.14%), Query Frame = 0
Query:   46 ATEEGMVSILGIGGKS-VRTSQS--KGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            A +   VS+LGIGGK  V+  +S   G++R P EIRIQ D+AE++ G  AT+ FPNPNDLT F V + P++G W GA + F+F  P  YPH+PP+V C T+I HPNID +G VCLNILRE+WKP+LD+N++IYGL++LF EPNPDDPLN EAAELFR D  QFER+V +TLRG ++
Sbjct:   33 ADQPRKVSLLGIGGKKMVKNGESGMTGKKRTPGEIRIQTDIAELDGGDVATIKFPNPNDLTLFDVSVTPDTGLWKGATYHFTFTIPPHYPHSPPRVECNTKIYHPNIDLQGKVCLNILREDWKPVLDINSVIYGLIYLFYEPNPDDPLNHEAAELFRKDKTQFERLVMRTLRGGIL 208          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: XP_009037603.1 (hypothetical protein AURANDRAFT_53859 [Aureococcus anophagefferens] >EGB07605.1 hypothetical protein AURANDRAFT_53859 [Aureococcus anophagefferens])

HSP 1 Score: 226.9 bits (577), Expect = 7.900e-56
Identity = 102/166 (61.45%), Postives = 127/166 (76.51%), Query Frame = 0
Query:   48 EEGMVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTL 214
            E+  VSILGIGGK +       +R+ P EIRIQKD+AE++ G  A + FPN NDLT F V + P++GFW GA + F+F  PA YPH PPKV C T+I HPNI+ EGNVCLNILR++WKP+LD+NA+IYGL++LF EPNPDDPLNKEAA L+R DI+ FER V +TL
Sbjct:   32 EKEKVSILGIGGKKMSKGTGSKKRKTPGEIRIQKDIAELDGGDVAVINFPNANDLTKFHVVVTPDTGFWKGATYHFTFSIPAMYPHEPPKVHCDTKIFHPNINLEGNVCLNILRQDWKPVLDINAVIYGLIYLFYEPNPDDPLNKEAAALYRDDIKMFERHVARTL 197          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: GAX17770.1 (ubiquitin-conjugating enzyme E2 M [Fistulifera solaris])

HSP 1 Score: 226.5 bits (576), Expect = 1.000e-55
Identity = 103/176 (58.52%), Postives = 134/176 (76.14%), Query Frame = 0
Query:   46 ATEEGMVSILGIGGKS-VRTSQS--KGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            A +   VS+LGIGGK  V+  ++   G++R P EIRIQ D+AE++ G  AT+ FPNPNDLT F V + P++G W GA + F+F  P  YPH+PP+V C T+I HPNID +G VCLNILRE+WKP+LD+N++IYGL++LF EPNPDDPLN EAAELFR D  QFER+V +TLRG ++
Sbjct:   33 ADQPQKVSLLGIGGKKMVKNGETGKTGKKRTPGEIRIQTDIAELDGGDVATIKFPNPNDLTLFDVSVTPDTGLWKGATYHFTFTIPPHYPHSPPRVECNTKIYHPNIDLQGKVCLNILREDWKPVLDINSVIYGLIYLFYEPNPDDPLNHEAAELFRKDKTQFERLVMRTLRGGIL 208          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: OQS07051.1 (hypothetical protein THRCLA_00941 [Thraustotheca clavata])

HSP 1 Score: 225.7 bits (574), Expect = 1.800e-55
Identity = 101/167 (60.48%), Postives = 135/167 (80.84%), Query Frame = 0
Query:   52 VSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            VSI GI G+  RT++ K ++R P EIRIQKD+AE++ G+AA ++FP+PNDLT F V++  ++G WTGA + F+F+ PA YPH PPKV C T+I HPNID EG+VCLNILR++WKP+LD+NA+IYGL++LF EPNPDDPLNKEAAE+FR D  +F+ +V ++LRG  I
Sbjct:   39 VSIFGI-GRGKRTAKPKEKKRTPGEIRIQKDIAELDGGSAAVVSFPDPNDLTTFDVKVAVDTGLWTGATYHFTFKIPALYPHEPPKVRCNTKIYHPNIDLEGHVCLNILRDDWKPVLDINAVIYGLIYLFYEPNPDDPLNKEAAEIFRNDPNRFKDLVSRSLRGQTI 204          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: CCI41435.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 221.9 bits (564), Expect = 2.600e-54
Identity = 102/164 (62.20%), Postives = 130/164 (79.27%), Query Frame = 0
Query:   52 VSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRG 216
            V ILG+ G+  R   SK ++R P EIRIQKD+AE++ G AA +TFP+ NDLT F V+I  ++G+W GA + FSFR P  YPH PPKV C T+I HPNID +GNVCLNILRE+WKP+LD+N++IYGL++LF EPN DDPLN+EAAELFR++  +F RIVK+TLRG
Sbjct:   37 VRILGV-GRGKRIGGSKEKKRTPGEIRIQKDIAELDGGDAANVTFPDTNDLTVFNVKIKVDNGYWKGAAYNFSFRIPPMYPHEPPKVRCHTKIYHPNIDLDGNVCLNILREDWKPVLDINSVIYGLIYLFYEPNSDDPLNREAAELFRSNPSEFARIVKRTLRG 199          
BLAST of NO02G04000 vs. NCBI_GenBank
Match: XP_008876548.1 (hypothetical protein H310_11600 [Aphanomyces invadans] >ETV94957.1 hypothetical protein H310_11600 [Aphanomyces invadans])

HSP 1 Score: 221.5 bits (563), Expect = 3.300e-54
Identity = 98/169 (57.99%), Postives = 135/169 (79.88%), Query Frame = 0
Query:   50 GMVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRGSVI 219
            G + I+G+G     T +SK ++R P EIRIQKD+AE++ G+AA ++FP+ NDLT+F V I  ++G WTGA + F+F+ P+ YPH PPKV C T+I HPNID +GNVCLNILRE+WKP+LD+NA+IYGL++LF EPNPDDPLN+EAAE+FR+D R+F+ +V ++LRG  +
Sbjct:   53 GGIKIMGLGR---GTRKSKEKKRTPGEIRIQKDIAELDGGSAAVVSFPDSNDLTNFHVRITVDTGLWTGAAYTFTFKIPSFYPHEPPKVRCMTKIYHPNIDLDGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNREAAEMFRSDPRRFQDVVGRSLRGQYV 218          
The following BLAST results are available for this feature:
BLAST of NO02G04000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30326.11.100e-8690.00ubiquitin-conjugating enzyme catalytic domain prot... [more]
XP_002183463.11.700e-5860.12predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN73839.18.500e-5859.65conserved unknown protein [Ectocarpus siliculosus][more]
BAO65811.11.200e-5662.72ubiquitin conjugating enzyme 12 [Ciliophrys infusi... [more]
GAX22876.14.700e-5659.09ubiquitin-conjugating enzyme E2 M [Fistulifera sol... [more]
XP_009037603.17.900e-5661.45hypothetical protein AURANDRAFT_53859 [Aureococcus... [more]
GAX17770.11.000e-5558.52ubiquitin-conjugating enzyme E2 M [Fistulifera sol... [more]
OQS07051.11.800e-5560.48hypothetical protein THRCLA_00941 [Thraustotheca c... [more]
CCI41435.12.600e-5462.20unnamed protein product [Albugo candida][more]
XP_008876548.13.300e-5457.99hypothetical protein H310_11600 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007056NSK007056Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04000.1NO02G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574931gene_991Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04000.1NO02G04000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04000 ID=NO02G04000|Name=NO02G04000|organism=Nannochloropsis oceanica|type=gene|length=1012bp
ATGCTCCGCGCCAAGAAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGC
GGCCGCCAAGATGGACGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAA
AGCATGGAGGCGGGGCACATGACGGCGGGGCCCCAGCTACGGAAGAAGGG
ATGGTGAGCATCTTAGGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAG
CAAGGGTCGACGTCGGCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAG
CGGAAGTGGAGCTAGGCACGGCGGCTACCCTTACGTTTCCCAACCCCAAC
GATCTCACTGATTTCTTGGTGGAGATTATGCCGGAATCAGGCTTCTGGAC
GGGGGCTAGGTTTAAGTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATA
CCCCTCCCAAGGTCATCTGCCAGACGCGTATTTTGCACCCCAACATTGAT
TGGGAGGGAAATGTCTGCTTGAATATTTTGCGGGAGGAATGGAAGCCAAT
CTTAGACGTGAATGCTATTATTTATGGGTTGTTGCACTTGTTTGCAGAGC
CCAATCCGGATGATCCTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCG
GATATCCGACAGTTTGAGCGGATCGTGAAGCAGACGTTGCGGGGgtccaa
ttatcagggacatagctttgagaggctcgtatgaagggaaaggcgagggc
gaggggtactagggagggatggatggaaggaggcaggcggaaagggagtg
aaagagcgttcaaggtcgttgaggagggggatgaccccccgaattgggac
atccgcgcttgtacagGAGCGTAATAATACGAGGGAATACAACAGCAGCG
GCAGCAGGAAAAATAGCAAGAATAACAACGAGCAGGAGCAGAAGGAGCAG
CAATAACCATAGCAGCAGCAGGAGCAGCAGCATCAGCGGCAACAGCGGCA
GCAGCAACGGCAGCAGCAGCAGCACCATCACCACTGCGAAATCACTTCAG
CAGCAGCAATGA
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protein sequence of NO02G04000.1

>NO02G04000.1-protein ID=NO02G04000.1-protein|Name=NO02G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MLRAKKKKEEEAAAAAAAAKMDVDGGSSSSSSAKHGGGAHDGGAPATEEG
MVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPN
DLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNID
WEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRA
DIRQFERIVKQTLRGSVIIRGNTTAAAAGKIARITTSRSRRSSNNHSSSR
SSSISGNSGSSNGSSSSTITTAKSLQQQQ*
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Synonyms
Publications