NO02G04000.1, NO02G04000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04000.1
Unique NameNO02G04000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr2:1092224..1093235 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1092224..1093235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04000.1 vs.
Match: EWM30326.1 (ubiquitin-conjugating enzyme catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 373.2 bits (957), Expect = 6.900e-100
Identity = 190/218 (87.16%), Postives = 202/218 (92.66%), Query Frame = 0 
Query:    1 MLRAKKKKEEEAAAAAAAA-KMDVDGGSSSSSSAKHGGG--AHDGGAPATEEGMVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPNDLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADIRQFERIVKQTLRG 216
            MLRAKKKKEEEAAAAAAAA K+DVDGGSSSS + + G    AHDGGAPATE G VSI+GIGGKSV+ +QSKGRRRQPAE+RIQKDLAEVELGTAATL FPNPNDLTDF+VE+ PESGFWTGA+F F+FRFPAEYPHTPPKV CQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRAD RQFER+VKQTLRG
Sbjct:  580 MLRAKKKKEEEAAAAAAAAAKIDVDGGSSSSVAVEAGEREKAHDGGAPATENGTVSIMGIGGKSVKAAQSKGRRRQPAELRIQKDLAEVELGTAATLIFPNPNDLTDFIVEVSPESGFWTGAKFTFTFRFPAEYPHTPPKVTCQTRILHPNIDWEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRADARQFERVVKQTLRG 797
The following BLAST results are available for this feature:
BLAST of NO02G04000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30326.16.900e-10087.16ubiquitin-conjugating enzyme catalytic domain prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04000NO02G04000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04000.1NO02G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04000.1.cds1NO02G04000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04000.1.cds2NO02G04000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04000.1 ID=NO02G04000.1|Name=NO02G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
ATGCTCCGCGCCAAGAAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGC
GGCCGCCAAGATGGACGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAA
AGCATGGAGGCGGGGCACATGACGGCGGGGCCCCAGCTACGGAAGAAGGG
ATGGTGAGCATCTTAGGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAG
CAAGGGTCGACGTCGGCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAG
CGGAAGTGGAGCTAGGCACGGCGGCTACCCTTACGTTTCCCAACCCCAAC
GATCTCACTGATTTCTTGGTGGAGATTATGCCGGAATCAGGCTTCTGGAC
GGGGGCTAGGTTTAAGTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATA
CCCCTCCCAAGGTCATCTGCCAGACGCGTATTTTGCACCCCAACATTGAT
TGGGAGGGAAATGTCTGCTTGAATATTTTGCGGGAGGAATGGAAGCCAAT
CTTAGACGTGAATGCTATTATTTATGGGTTGTTGCACTTGTTTGCAGAGC
CCAATCCGGATGATCCTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCG
GATATCCGACAGTTTGAGCGGATCGTGAAGCAGACGTTGCGGGGGAGCGT
AATAATACGAGGGAATACAACAGCAGCGGCAGCAGGAAAAATAGCAAGAA
TAACAACGAGCAGGAGCAGAAGGAGCAGCAATAACCATAGCAGCAGCAGG
AGCAGCAGCATCAGCGGCAACAGCGGCAGCAGCAACGGCAGCAGCAGCAG
CACCATCACCACTGCGAAATCACTTCAGCAGCAGCAATGA
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protein sequence of NO02G04000.1

>NO02G04000.1-protein ID=NO02G04000.1-protein|Name=NO02G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MLRAKKKKEEEAAAAAAAAKMDVDGGSSSSSSAKHGGGAHDGGAPATEEG
MVSILGIGGKSVRTSQSKGRRRQPAEIRIQKDLAEVELGTAATLTFPNPN
DLTDFLVEIMPESGFWTGARFKFSFRFPAEYPHTPPKVICQTRILHPNID
WEGNVCLNILREEWKPILDVNAIIYGLLHLFAEPNPDDPLNKEAAELFRA
DIRQFERIVKQTLRGSVIIRGNTTAAAAGKIARITTSRSRRSSNNHSSSR
SSSISGNSGSSNGSSSSTITTAKSLQQQQ*
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mRNA from alignment at chr2:1092224..1093235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04000.1 ID=NO02G04000.1|Name=NO02G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at chr2:1092224..1093235+ (Nannochloropsis oceanica)
ATGCTCCGCGCCAAGAAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGC
GGCCGCCAAGATGGACGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAA
AGCATGGAGGCGGGGCACATGACGGCGGGGCCCCAGCTACGGAAGAAGGG
ATGGTGAGCATCTTAGGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAG
CAAGGGTCGACGTCGGCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAG
CGGAAGTGGAGCTAGGCACGGCGGCTACCCTTACGTTTCCCAACCCCAAC
GATCTCACTGATTTCTTGGTGGAGATTATGCCGGAATCAGGCTTCTGGAC
GGGGGCTAGGTTTAAGTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATA
CCCCTCCCAAGGTCATCTGCCAGACGCGTATTTTGCACCCCAACATTGAT
TGGGAGGGAAATGTCTGCTTGAATATTTTGCGGGAGGAATGGAAGCCAAT
CTTAGACGTGAATGCTATTATTTATGGGTTGTTGCACTTGTTTGCAGAGC
CCAATCCGGATGATCCTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCG
GATATCCGACAGTTTGAGCGGATCGTGAAGCAGACGTTGCGGGGGTCCAA
TTATCAGGGACATAGCTTTGAGAGGCTCGTATGAAGGGAAAGGCGAGGGC
GAGGGGTACTAGGGAGGGATGGATGGAAGGAGGCAGGCGGAAAGGGAGTG
AAAGAGCGTTCAAGGTCGTTGAGGAGGGGGATGACCCCCCGAATTGGGAC
ATCCGCGCTTGTACAGGAGCGTAATAATACGAGGGAATACAACAGCAGCG
GCAGCAGGAAAAATAGCAAGAATAACAACGAGCAGGAGCAGAAGGAGCAG
CAATAACCATAGCAGCAGCAGGAGCAGCAGCATCAGCGGCAACAGCGGCA
GCAGCAACGGCAGCAGCAGCAGCACCATCACCACTGCGAAATCACTTCAG
CAGCAGCAATGA
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Coding sequence (CDS) from alignment at chr2:1092224..1093235+

>NO02G04000.1 ID=NO02G04000.1|Name=NO02G04000.1|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr2:1092224..1093235+ (Nannochloropsis oceanica)
ATGCTCCGCGCCAAGAAGAAGAAGGAGGAAGAAGCGGCAGCAGCAGCGGC
GGCCGCCAAGATGGACGTGGACGGGGGGTCGTCGTCGTCATCATCGGCAA
AGCATGGAGGCGGGGCACATGACGGCGGGGCCCCAGCTACGGAAGAAGGG
ATGGTGAGCATCTTAGGGATTGGGGGAAAGAGTGTAAGGACTTCGCAGAG
CAAGGGTCGACGTCGGCAGCCTGCCGAGATTCGCATTCAGAAGGACCTAG
CGGAAGTGGAGCTAGGCACGGCGGCTACCCTTACGTTTCCCAACCCCAAC
GATCTCACTGATTTCTTGGTGGAGATTATGCCGGAATCAGGCTTCTGGAC
GGGGGCTAGGTTTAAGTTTTCGTTTCGGTTCCCGGCTGAGTACCCGCATA
CCCCTCCCAAGGTCATCTGCCAGACGCGTATTTTGCACCCCAACATTGAT
TGGGAGGGAAATGTCTGCTTGAATATTTTGCGGGAGGAATGGAAGCCAAT
CTTAGACGTGAATGCTATTATTTATGGGTTGTTGCACTTGTTTGCAGAGC
CCAATCCGGATGATCCTCTGAATAAGGAGGCAGCCGAGTTGTTTCGGGCG
GATATCCGACAGTTTGAGCGGATCGTGAAGCAGACGTTGCGGGGGAGCGT
AATAATACGAGGGAATACAACAGCAGCGGCAGCAGGAAAAATAGCAAGAA
TAACAACGAGCAGGAGCAGAAGGAGCAGCAATAACCATAGCAGCAGCAGG
AGCAGCAGCATCAGCGGCAACAGCGGCAGCAGCAACGGCAGCAGCAGCAG
CACCATCACCACTGCGAAATCACTTCAGCAGCAGCAATGA
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Synonyms
Publications