NO02G03790, NO02G03790 (gene) Nannochloropsis oceanica

Overview
NameNO02G03790
Unique NameNO02G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2781
Alignment locationchr2:1031332..1034112 +

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Properties
Property NameValue
DescriptionFlagellar outer dynein arm light chain 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1031332..1034112 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
BLAST of NO02G03790 vs. NCBI_GenBank
Match: CBN78115.1 (flagellar outer dynein arm light chain 2 [Ectocarpus siliculosus])

HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30
Identity = 61/121 (50.41%), Postives = 90/121 (74.38%), Query Frame = 0
Query:   35 VHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            V I+LPTY  +P EDEKF P+  + +AE+ +  EL+ K YD E    W++ +AD +++GVK  N+PR+K+VVQV +G++++QGV VASRCLWD+ TDN+ S  F N+SLWC+ ++F VYT+
Sbjct:   12 VEIVLPTYITKPSEDEKFYPSEVKAVAEKAVQVELQDKEYDGEEAKEWSLNIADTIREGVKTLNVPRYKIVVQVTIGQMKDQGVRVASRCLWDTATDNYASVQFKNQSLWCSAMVFGVYTE 132          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: XP_009040579.1 (hypothetical protein AURANDRAFT_32091 [Aureococcus anophagefferens] >EGB04664.1 hypothetical protein AURANDRAFT_32091 [Aureococcus anophagefferens])

HSP 1 Score: 137.9 bits (346), Expect = 2.700e-29
Identity = 57/121 (47.11%), Postives = 87/121 (71.90%), Query Frame = 0
Query:   35 VHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            + ++LPTY + P E EKF P+ A+++ E+VL  +L+   YDDES   W +++ + +K  +K+ NIPR+KVVVQV +G++++QGV VASRCLWD   DN+ S  + NE+LW  V++F +YTD
Sbjct:   13 IEVVLPTYSMNPTEVEKFYPSEAKQICERVLTGQLENATYDDESAKEWILLIGNTIKSEIKSLNIPRYKVVVQVTIGQMKDQGVSVASRCLWDISNDNYASVNYTNETLWANVMVFVIYTD 133          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: XP_009041904.1 (hypothetical protein AURANDRAFT_34069 [Aureococcus anophagefferens] >EGB03433.1 hypothetical protein AURANDRAFT_34069 [Aureococcus anophagefferens])

HSP 1 Score: 136.7 bits (343), Expect = 6.000e-29
Identity = 59/131 (45.04%), Postives = 88/131 (67.18%), Query Frame = 0
Query:   25 QEGKVSAHAGVHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            +EG       + ++LPTY + P E E+F P+ A+R+ E+VLV EL  K Y ++S  +W I + + +K  +K   +PR+K++VQV +G++++QGV VASRCLWD   DN+TS  F N SLW  V++F VYTD
Sbjct:    4 EEGPRPGQQVIEVVLPTYSMIPAEQERFYPSEAKRICERVLVGELDNKEYFEDSAKDWIISIGNTIKSEIKCLTVPRYKIIVQVTIGQMKDQGVSVASRCLWDITFDNYTSVNFTNSSLWANVMVFGVYTD 134          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: OQS01929.1 (Outer Dynein Arm Light Chain 2 [Thraustotheca clavata])

HSP 1 Score: 119.8 bits (299), Expect = 7.600e-24
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   35 VHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQ-NIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            + I +PTY + P EDEKF       +  + L +EL+GK YD+E    W   +ADA+K  VKA  N PR+K++VQ  +G+ + Q V +ASRCLWD+  DNH SA F NE++W T ++F +Y+D
Sbjct:  389 IKIYMPTYIMAPTEDEKFRRRKVCGIVSECLKNELQGKEYDEEDAKQWCNSIADAIKNRVKADCNFPRYKIIVQAFVGQQKLQDVRIASRCLWDNDNDNHASAEFHNETIWATCIVFGLYSD 510          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: XP_008865232.1 (hypothetical protein H310_03218 [Aphanomyces invadans] >ETW05455.1 hypothetical protein H310_03218 [Aphanomyces invadans])

HSP 1 Score: 114.8 bits (286), Expect = 2.500e-22
Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = 0
Query:    1 MADIPASPSPAAIQISPSIPPKEMQEGKVSAHAGVHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQ-NIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            MAD+ +S    A  ++P    K  Q         + + +PTY + P EDE+F       +  + LV EL+ K YD++    WA  +ADAVK  ++ + N PR+K++VQ  +G+ + Q V +ASRCLWD+  DNH SA F N+S+W T ++F +Y+D
Sbjct:    1 MADVDSSGGVPA--VAPVAASKNAQV--------IKVYMPTYIMAPTEDERFRRKTVCAIVSECLVKELENKEYDEDDAKVWATAIADAVKNRIRTECNFPRYKIIVQTFVGQQKLQDVRIASRCLWDNDHDNHASAEFANQSIWATCIVFGMYSD 146          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: EJY78446.1 (Flagellar outer dynein arm light chain 2 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 113.6 bits (283), Expect = 5.500e-22
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   41 TYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVY 154
            TY+L PRE E+F P+  + L E+V++  LK K YD  +  + A  +AD +K  VKA NIP +K++VQ V+GE+  QGV VAS+CLWD   DN  S T+ N SL+CT ++F V+
Sbjct:   12 TYRLEPREHERFYPSKVRSLIEEVVLRNLKDKEYDHATAKSMAESIADQIKMQVKALNIPSYKIIVQTVIGEITGQGVRVASKCLWDDSNDNFASFTYQNNSLFCTGIVFGVF 124          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: CDW80687.1 (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 113.6 bits (283), Expect = 5.500e-22
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   41 TYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVY 154
            T++L PRE+E+F P+  + L E+V++  LK K YD  +    A  +AD +K  VKA NIP +K+VVQ V+GE+  QGV VAS+CLWD   DN  S T+ N SL+CT ++F VY
Sbjct:   12 TFRLEPRENERFYPSKVRSLIEEVILRNLKDKEYDHATAKTMAESIADQIKMQVKALNIPSYKIVVQTVIGEITGQGVRVASKCLWDDQNDNLASFTYQNNSLFCTGMVFGVY 124          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: XP_008604719.1 (hypothetical protein SDRG_00990 [Saprolegnia diclina VS20] >EQC42150.1 hypothetical protein SDRG_00990 [Saprolegnia diclina VS20])

HSP 1 Score: 112.8 bits (281), Expect = 9.300e-22
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 0
Query:   35 VHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQ-NIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            + I +PTY + P +DEKF       +  + L  EL  K YD+E    W+  +ADAVK  ++A+   PR+K++VQ  +G+ + Q V +ASRCLWD+  DNH SA F NE++W T ++F +Y+D
Sbjct:   20 IKIYMPTYIMAPTDDEKFRRRKVSGIVAECLQRELDAKEYDEEDAKQWSTAIADAVKNRIRAECAFPRYKIIVQAFVGQQKLQDVRIASRCLWDNDYDNHASAEFHNETIWATCIVFGLYSD 141          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: XP_008915128.1 (hypothetical protein PPTG_18705 [Phytophthora parasitica INRA-310] >ETI31035.1 hypothetical protein F443_21953 [Phytophthora parasitica P1569] >ETK71417.1 hypothetical protein L915_21348 [Phytophthora parasitica] >ETL24856.1 hypothetical protein L916_21219 [Phytophthora parasitica] >ETL78073.1 hypothetical protein L917_21073 [Phytophthora parasitica] >ETM99632.1 hypothetical protein PPTG_18705 [Phytophthora parasitica INRA-310] >ETO59738.1 hypothetical protein F444_21972 [Phytophthora parasitica P1976] >ETP00831.1 hypothetical protein F441_21838 [Phytophthora parasitica CJ01A1] >ETP28977.1 hypothetical protein F442_21816 [Phytophthora parasitica P10297])

HSP 1 Score: 112.5 bits (280), Expect = 1.200e-21
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = 0
Query:   23 EMQEGKVSAHAGVHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQ-NIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            EM  G+  A+  + +++PTY + P EDE+F       +  + +  EL+GK +D+     W+  +ADAVK  + A+ N PR+K+VVQ  +G+ R Q V + SRCLWD+  DNH SA F ++ +W T ++F+ Y D
Sbjct:    5 EMASGR--ANQVIKVVMPTYIMAPTEDERFRRKKVCNIISECMTKELEGKEFDESDCKGWSTAIADAVKARIHAECNFPRYKIVVQTFIGQQRLQDVRITSRCLWDNDHDNHASAVFNSQHIWATCVVFSFYAD 136          
BLAST of NO02G03790 vs. NCBI_GenBank
Match: KUF76480.1 (Tctex1 domain-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 111.7 bits (278), Expect = 2.100e-21
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 0
Query:   23 EMQEGKVSAHAGVHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQ-NIPRFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIFAVYTD 156
            EM  G+  A+  + +++PTY + P EDE+F       +  + +  EL GK +D+     W+  +ADAVK  + A+ N PR+K+VVQ  +G+ R Q V + SRCLWD+  DNH SA F ++ +W T ++F+ Y D
Sbjct:    5 EMASGR--ANQVIKVVMPTYIMAPTEDERFRRKKVCNIISECMTKELXGKEFDESDCKGWSTAIADAVKARIHAECNFPRYKIVVQTFIGQQRLQDVRITSRCLWDNDHDNHASAVFNSQHIWATCVVFSFYAD 136          
The following BLAST results are available for this feature:
BLAST of NO02G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN78115.11.100e-3050.41flagellar outer dynein arm light chain 2 [Ectocarp... [more]
XP_009040579.12.700e-2947.11hypothetical protein AURANDRAFT_32091 [Aureococcus... [more]
XP_009041904.16.000e-2945.04hypothetical protein AURANDRAFT_34069 [Aureococcus... [more]
OQS01929.17.600e-2445.08Outer Dynein Arm Light Chain 2 [Thraustotheca clav... [more]
XP_008865232.12.500e-2237.82hypothetical protein H310_03218 [Aphanomyces invad... [more]
EJY78446.15.500e-2247.79Flagellar outer dynein arm light chain 2 (macronuc... [more]
CDW80687.15.500e-2248.67UNKNOWN [Stylonychia lemnae][more]
XP_008604719.19.300e-2241.80hypothetical protein SDRG_00990 [Saprolegnia dicli... [more]
XP_008915128.11.200e-2138.81hypothetical protein PPTG_18705 [Phytophthora para... [more]
KUF76480.12.100e-2138.81Tctex1 domain-containing protein 1 [Phytophthora n... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03790.1NO02G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636240gene_971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03790.1NO02G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03790 ID=NO02G03790|Name=NO02G03790|organism=Nannochloropsis oceanica|type=gene|length=2781bp
AGGGATCAGAAAAGAAATGGCAGACATTCCAGCTAGCCCCTCGCCAGCAG
CAATACAAATATCACCGAGCATACCGCCAAAAGAAATGCAAGAAGGAAAA
GTCTCCGCGCATGCCGGCGTCCACATATTATTGCCCACATATCAGCTGCG
TCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAGCGCAACGATTAGCGG
AGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCTTATGACGATGAAAGT
GTGACGAATTGGGCCATCGTTGTCGCAGATGCGGTCAAGAAAGGGGTGAA
AGgtgggcttgatcgaaggggagggaggagaggatccaggatacggtggg
cggataggaagcttaatgtctgtctaattagtagctaggcagaaagtata
catatccagtaaaaaaatcttgtattcacatatatatacttcatattcca
tcaaagCACAAAATATACCAAGGTTCAAAGTTGTGGTGCAAGTCGTGTTG
GGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGGTGCTTGTGGGA
TTCGATCACCGACAATCACACCTCCGCAACATTTATTAATgtacgtttta
aaagagcgacgcttttggtcgcgacaaagagctaataaatatgccctaaa
tattactacttcgctcacccatatccttgctacctcgctcacctataacc
ttatccttatatccttatcctcatatcgttatccttaatccttattcact
atctatctatccttatccttacattctaaacttattttccgccacccaca
gGAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGAA
AAAGATCGGGGGGTGATAAATAAAACGTCTGCGCTCTTGTCGATGCGTAC
ATGCACAGCCCTAAAACAATAAAAGAAAAAAAGAAATACGAAGAGAAATG
AAACGATGGGTGTTGTCAGTAATCAAGCCGGGCATTTACTGTACATTCCC
CCCGTTTTGTTCACATTGGTCTATCGGTCGCATGAACAGCCTTGCTTGTC
AATTAGTGGTCATCTTCGCTTTTTCCCGGGCATTCTTTTCGTAATTCGTC
TATGCTACCGTACTGATGTCCGCAAAAGAGACAATAGCGGTGCTCCTGCC
GCAAGTAAGCAGTCGCCACGCTTAATTTCTCTGATGTGCTCAACGTGTCC
CAAAGTTCGTGCTTGCCATCTACTATAGCTAAGCCTTCTCTTTCTTCTTC
TCCTCCACATTCCGTTTGTCCCTGCGGCACGGCAGCGGCCGCCTCCTCTT
GAGTATGCACTGTGTGTGTTTCTGTTCCCGTGGCCAATAGGGCGTTAGAT
GGCTCGTCCACCCCCTCCTTCCTTCGATCTCTGATCCTCGCATCCATCCC
CTTGTTTTCCTCCTCCTCTATGCTGGTCCACCACAAACAGGACATCTCCC
GACCCGCCCGCGTATCTAAAGTTTCGATTGTCTTCATCGCCTTTGTCAAA
TTCGACGCAACGCGCCGCTCCGCAAACCGATTAGACATGGCCACCTGGAA
GTCTTCTTTGCATTGCTCAAGAAGTTCAACCCGCGCCTGTGTCCATTGCT
CCAGCCGCTGGTGCGCTTCGCTCTGGCGCTCTGCCTGGCCAAGCCCCGCG
CGGTCTGTCTTCTTTACCACGGCAATTGGCGCCGTGATACCGTCTGCGCT
CTTGCCAATACCATGGCCTTCCTTGTAGCCCATCAATTTCAGCATCCGCA
ACCCTACATTGTCCTGTAAGGGTAAAGGAGGGGTGTAGAGCGAACATGAG
AAGAGTTGAGGAGGGCGGACAGATGGCCTGGAGAAGCGAGCGGCACGTCT
CGAGGACAATCATTACCTGAGGCAATGGTGTATTCATTCCCTCTCGCAAT
TTCTCCTCCGCATTTGCTGCCTTAGATTTTTTGGACGTTGCTTTAGAAGG
CCGAGGCTGAACAGCCCTCTTGCTACCAATGTTTGTGGTCGGCTGCTGGT
CAACAAACGTACCGCTCAAGTAGTCCTCATCATCATGGTAGCCATTGGGA
AGAAGGCTCCTACTCTGCTTTTCTGCCACCTCCAGCTGATCCTGCTTCCT
TGTCTCCTTAAAACGATTCATGTGCTCACTGGACTCGTTCTTGACGTGTT
ATTCTATTCTCTATTCTGTGATAGTCTGTGTCTGTCTTGGGGGAGGTTTG
GGAGAGGGGATTGTGTGTCTGTCTCTGTGTTTGTATCAGCGCGTGTCTGT
GTCTGCATGTATGTGTGTCTGTATACATGCCTGCCTTTGCGTTTGTCTGT
TTATGGTTTTCTGTGTATGTGTGGCTGTGTCTGTCTGTAATATGAAGGTG
AGAGTCATGGTGAAAAAGGTGCGACGGACCGTACGGAGCGTGGCGCACTC
CATGACTTCGGCAGTCTTCGTACACGAGTTAGTAGAGCGTGTTAACGGTA
ACTCGAGCCGCAAAGTAACGAAGCCCTTGCGTGGGTGCAAGCGTCCTCGC
ACCTCGAAGGCCTCGATTTCTGGCCGACCGTGACCTCGTTTACCCCCACG
ACACGGGGCAGTGAGCCGGCGCGCCAACGCGTTTCTTGGGCGGCCCTGAA
GGCTGAGGCGTGTGGAAAAGTCGTTTTTGGATCTCGAGGAGCATGGAACG
AGTAAAACATGCAGCTCTTGTGGTCAGGCGAACAGAATGCTATGGAACAC
CAAAGTCTAAAAATGTCCACATTGTGGAAATGAAGAAGAGGGGGACGTCA
ACTCGGCCAAGAAGGCTCTCATAAAGGTGTT
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protein sequence of NO02G03790.1

>NO02G03790.1-protein ID=NO02G03790.1-protein|Name=NO02G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MADIPASPSPAAIQISPSIPPKEMQEGKVSAHAGVHILLPTYQLRPREDE
KFSPAVAQRLAEQVLVDELKGKAYDDESVTNWAIVVADAVKKGVKAQNIP
RFKVVVQVVLGEVREQGVWVASRCLWDSITDNHTSATFINESLWCTVLIF
AVYTD*
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Synonyms
Publications