NO02G03730, NO02G03730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015902058.1 (PREDICTED: polyadenylate-binding protein 6-like [Ziziphus jujuba]) HSP 1 Score: 87.8 bits (216), Expect = 1.400e-13 Identity = 75/306 (24.51%), Postives = 129/306 (42.16%), Query Frame = 0 Query: 145 EPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTA--------LFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRIL-GAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442 +P S L++GDL +TEADL+ F C+G + V + D LT +L Y +V + A+ A + E++G+ +R+ W+QR+ LF+ +LD S T L F +G + + GK +G +F + A AR +H ++ G Y + V +T V S + + +TE LL F+ FG+V ++ + + + +G+ RG+GFV+F + A++A+ L G + RL A ++K Sbjct: 19 DPVRKSSLYVGDLDPQVTEADLMDTFRCMGPIASVRLCHDSLTGDSLRYAYVNFFSFSHASKALNFLNHTELKGKPMRIMWSQRDPLTRKTGIGNLFVKNLDPSITSGQLQHMFSNYGTILSCKVAEENGKSKGFGFVQFNSEESALAARDALHDTLVKGKKIYVSKFVKKSMRT------------------------------VVHEESSFTNLYVKNLPEDVTEDLLLDMFSRFGKVSSIAI-----MRNDQGK------SRGFGFVNFHTPEE----AMKAVEVLNGSLQGPNRLSVARAQK 279
BLAST of NO02G03730 vs. NCBI_GenBank
Match: PRW50946.1 (oligouridylate-binding 1-like [Chlorella sorokiniana]) HSP 1 Score: 87.8 bits (216), Expect = 1.400e-13 Identity = 63/194 (32.47%), Postives = 89/194 (45.88%), Query Frame = 0 Query: 137 AAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQR-------------------NTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVW-HHPQT 311 A KE + E +F+GDL+ +T+A L AF + D T R+ GYGFV RE+A AA + M I RR+R GWAQ NT +++G+L S + ++ R FG FGP+ E + Y + G YG +F DA A M+G+ LG ++ W HP T Sbjct: 215 AFQKEQKEEVANHFHVFVGDLSSDVTDAMLHAAFSACPGCSDARVMWDHATGRSRGYGFVSFRHREQAEAAIQMMHGQFIGARRVRCGWAQHKTDGIVTMDPQILDRADPTNTNVYVGNLSPSLSDAEVRRHFGAFGPIAEVKLY----RKGSYGFVRFKAHADAVRAIVGMNGQALGGKV--MKCSWGRHPNT 402
BLAST of NO02G03730 vs. NCBI_GenBank
Match: EDK99170.1 (cytotoxic granule-associated RNA binding protein 1, isoform CRA_d, partial [Mus musculus]) HSP 1 Score: 87.4 bits (215), Expect = 1.900e-13 Identity = 81/318 (25.47%), Postives = 134/318 (42.14%), Query Frame = 0 Query: 137 AAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWA------QRNTA----LFIGDLDASTTIDDLHRAFGLFGPLYEDQTY--LRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAV-ILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442 AA +E + L++G+L+R +TEA ++Q F +G + + D T N Y FV+ AAAA M +I G+ ++V WA +++T+ +F+GDL T +D+ AF FG + + + + GK YG F + DAE A ++M G+ LG IR W + S P + V + V + +TE L+ F+PFG+++ + + P +GY FV FS A AI ++ G +G ++C + K+ Sbjct: 2 AAATAAAMEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVS----------QSSPNNCTV-YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFS----SHESAAHAIVSVNGTTIEGHVVKCYWGKE 285
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015866815.1 (PREDICTED: polyadenylate-binding protein 6-like [Ziziphus jujuba]) HSP 1 Score: 87.0 bits (214), Expect = 2.400e-13 Identity = 75/306 (24.51%), Postives = 129/306 (42.16%), Query Frame = 0 Query: 145 EPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTA--------LFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRIL-GAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442 +P S L++GDL +TEADL+ F C+G + V + RD LT +L Y +V + A+ A + E++G+ +R+ W+QR+ LF+ +LD S T L F +G + + GK +G +F + A AR +H ++ G Y + V +T V S + + +TE LL F+ FG+V ++ + + + +G+ RG+GFV+F + A++A+ L G + L A ++K Sbjct: 19 DPVRKSSLYVGDLDPQVTEADLMDTFRCMGPIASVRLCRDSLTGDSLRYAYVNFFSFSHASKALNFLNHTELKGKPMRIMWSQRDPLTRKTGIGNLFVKNLDPSITSGQLQHMFSNYGTILSCKVAEENGKSKGFGFVQFNSEESALAARDALHDTLVKGKKIYVSKFVKKSMRT------------------------------VVHEESSFTNLYVKNLPEDVTEDLLLDMFSRFGKVSSIAI-----MRNDQGK------SRGFGFVNFHTPEE----AMKAVEVLNGSLQGPNGLSVARAQK 279
BLAST of NO02G03730 vs. NCBI_GenBank
Match: CBX25354.1 (hypothetical_protein [Oryza brachyantha]) HSP 1 Score: 86.7 bits (213), Expect = 3.200e-13 Identity = 92/364 (25.27%), Postives = 149/364 (40.93%), Query Frame = 0 Query: 139 YKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGK---YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGEGVALSKSHGS-----------GVMHMDRGVSSSPPTMMQH--YAPSCRP 487 Y E P S ++ G ++ ++ DL + E VG+V V + + K R GY FV T++ A A + + + +++G+RIRV +Q LFIG++ S T DD +A GP ++ + YG ++ AE AR++M T V W P+ +S+ SV+V+ + +T+ L + F GE+ V+LP G G R YGFVHF + R A+ A++ + G L C+ + KP A + E V+L S+G+ G+M + +P ++ Q YAP P Sbjct: 108 YAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKDDSR--GYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVGPGVLKADLMKVSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKNLFERHGEITKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELAGQVLDCSLA-KPAATDKKDERVSLPSSNGAPLLPSYPPLGYGIMSVPSAYGVAPASITQPMLYAPRAPP 424
BLAST of NO02G03730 vs. NCBI_GenBank
Match: GAX72653.1 (hypothetical protein CEUSTIGMA_g109.t1 [Chlamydomonas eustigma]) HSP 1 Score: 86.7 bits (213), Expect = 3.200e-13 Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0 Query: 152 LFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQR-------------------NTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETA-----RREMHGRIL 295 +F+GDL+ +T+A L F VG+ + D T R+ GYGFV T+E+A A +MQ ++ R+IRVGWAQ NT +++G++ T+ DL F ++GP+ E ++ K G YG K+ + A A RE+HGR+L Sbjct: 111 IFVGDLSCDVTDAILFHTFSGVGQCSDARVMWDNSTGRSKGYGFVSFRTKEDAELAIGQMQGKQVGSRKIRVGWAQHKQEEGGPQDEMTIDRSDPSNTNVYLGNISPETSEQDLTAHFSVYGPISE----IKLHKKGGYGFVKYERHVAAVKAIVASHGRELHGRVL 273
BLAST of NO02G03730 vs. NCBI_GenBank
Match: AAO72701.1 (putative RNA-binding protein, partial [Oryza sativa Japonica Group]) HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13 Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0 Query: 146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487 P S +++G ++ ++ DL + E VG+V V + R K R GY FV T+ A A K + + +++G+RIRV +Q LFIG++ S T DD + GP L D + + YG ++ AE AR+EM + V W P+ +S+ SV+V+ + +T+ L F GE+ V+LP G G R YGFVHF + R A+ A++ + G L C+ +K P A P+ G L S+ G G+M + ++P + Q YAP P Sbjct: 119 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 428
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015619732.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >XP_015619733.1 PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >XP_015619734.1 PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >ABA95754.2 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] >ABG21876.1 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] >BAT15798.1 Os12g0136200 [Oryza sativa Japonica Group]) HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13 Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0 Query: 146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487 P S +++G ++ ++ DL + E VG+V V + R K R GY FV T+ A A K + + +++G+RIRV +Q LFIG++ S T DD + GP L D + + YG ++ AE AR+EM + V W P+ +S+ SV+V+ + +T+ L F GE+ V+LP G G R YGFVHF + R A+ A++ + G L C+ +K P A P+ G L S+ G G+M + ++P + Q YAP P Sbjct: 107 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 416
BLAST of NO02G03730 vs. NCBI_GenBank
Match: ABA91387.2 (RNA recognition motif family protein, expressed [Oryza sativa Japonica Group]) HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13 Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0 Query: 146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487 P S +++G ++ ++ DL + E VG+V V + R K R GY FV T+ A K + + +++G+RIRV +Q LFIG++ S T DD +A GP L D + + YG ++ AE AR+EM + V W P+ +S+ SV+V+ + +T+ L F GE+ V+LP G G R YGFVHF + R A+ A++ + G L C+ +K P A P+ G L S+ G G+M + ++P + Q YAP P Sbjct: 106 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSVS--------------------------TSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 415
BLAST of NO02G03730 vs. NCBI_GenBank
Match: BAF29121.1 (Os12g0136200, partial [Oryza sativa Japonica Group]) HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13 Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0 Query: 146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487 P S +++G ++ ++ DL + E VG+V V + R K R GY FV T+ A A K + + +++G+RIRV +Q LFIG++ S T DD + GP L D + + YG ++ AE AR+EM + V W P+ +S+ SV+V+ + +T+ L F GE+ V+LP G G R YGFVHF + R A+ A++ + G L C+ +K P A P+ G L S+ G G+M + ++P + Q YAP P Sbjct: 120 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 429 The following BLAST results are available for this feature:
BLAST of NO02G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G03730 ID=NO02G03730|Name=NO02G03730|organism=Nannochloropsis oceanica|type=gene|length=2274bpback to top protein sequence of NO02G03730.1 >NO02G03730.1-protein ID=NO02G03730.1-protein|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bpback to top Synonyms
Publications
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