NO02G03730, NO02G03730 (gene) Nannochloropsis oceanica

Overview
NameNO02G03730
Unique NameNO02G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2274
Alignment locationchr2:1006694..1008967 +

Link to JBrowse

Properties
Property NameValue
DescriptionTia1 cytotoxic granule-associated rna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1006694..1008967 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015902058.1 (PREDICTED: polyadenylate-binding protein 6-like [Ziziphus jujuba])

HSP 1 Score: 87.8 bits (216), Expect = 1.400e-13
Identity = 75/306 (24.51%), Postives = 129/306 (42.16%), Query Frame = 0
Query:  145 EPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTA--------LFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRIL-GAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442
            +P   S L++GDL   +TEADL+  F C+G +  V +  D LT  +L Y +V   +   A+ A   +   E++G+ +R+ W+QR+          LF+ +LD S T   L   F  +G +   +     GK   +G  +F   + A  AR  +H  ++ G   Y  + V    +T                              V     S    +   +   +TE LL   F+ FG+V ++ +     + + +G+       RG+GFV+F    +    A++A+  L G +    RL  A ++K
Sbjct:   19 DPVRKSSLYVGDLDPQVTEADLMDTFRCMGPIASVRLCHDSLTGDSLRYAYVNFFSFSHASKALNFLNHTELKGKPMRIMWSQRDPLTRKTGIGNLFVKNLDPSITSGQLQHMFSNYGTILSCKVAEENGKSKGFGFVQFNSEESALAARDALHDTLVKGKKIYVSKFVKKSMRT------------------------------VVHEESSFTNLYVKNLPEDVTEDLLLDMFSRFGKVSSIAI-----MRNDQGK------SRGFGFVNFHTPEE----AMKAVEVLNGSLQGPNRLSVARAQK 279          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: PRW50946.1 (oligouridylate-binding 1-like [Chlorella sorokiniana])

HSP 1 Score: 87.8 bits (216), Expect = 1.400e-13
Identity = 63/194 (32.47%), Postives = 89/194 (45.88%), Query Frame = 0
Query:  137 AAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQR-------------------NTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVW-HHPQT 311
            A  KE + E      +F+GDL+  +T+A L  AF          +  D  T R+ GYGFV    RE+A AA + M    I  RR+R GWAQ                    NT +++G+L  S +  ++ R FG FGP+ E + Y    + G YG  +F    DA  A   M+G+ LG     ++  W  HP T
Sbjct:  215 AFQKEQKEEVANHFHVFVGDLSSDVTDAMLHAAFSACPGCSDARVMWDHATGRSRGYGFVSFRHREQAEAAIQMMHGQFIGARRVRCGWAQHKTDGIVTMDPQILDRADPTNTNVYVGNLSPSLSDAEVRRHFGAFGPIAEVKLY----RKGSYGFVRFKAHADAVRAIVGMNGQALGGKV--MKCSWGRHPNT 402          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: EDK99170.1 (cytotoxic granule-associated RNA binding protein 1, isoform CRA_d, partial [Mus musculus])

HSP 1 Score: 87.4 bits (215), Expect = 1.900e-13
Identity = 81/318 (25.47%), Postives = 134/318 (42.14%), Query Frame = 0
Query:  137 AAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWA------QRNTA----LFIGDLDASTTIDDLHRAFGLFGPLYEDQTY--LRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAV-ILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442
            AA     +E +    L++G+L+R +TEA ++Q F  +G  +   +  D  T  N  Y FV+      AAAA   M   +I G+ ++V WA      +++T+    +F+GDL    T +D+  AF  FG + + +    +  GK   YG   F  + DAE A ++M G+ LG     IR  W   +                                 S P +  V +   V + +TE L+   F+PFG+++ + + P                  +GY FV FS        A  AI ++ G   +G  ++C + K+
Sbjct:    2 AAATAAAMEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVS----------QSSPNNCTV-YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFS----SHESAAHAIVSVNGTTIEGHVVKCYWGKE 285          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015866815.1 (PREDICTED: polyadenylate-binding protein 6-like [Ziziphus jujuba])

HSP 1 Score: 87.0 bits (214), Expect = 2.400e-13
Identity = 75/306 (24.51%), Postives = 129/306 (42.16%), Query Frame = 0
Query:  145 EPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTA--------LFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRIL-GAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442
            +P   S L++GDL   +TEADL+  F C+G +  V + RD LT  +L Y +V   +   A+ A   +   E++G+ +R+ W+QR+          LF+ +LD S T   L   F  +G +   +     GK   +G  +F   + A  AR  +H  ++ G   Y  + V    +T                              V     S    +   +   +TE LL   F+ FG+V ++ +     + + +G+       RG+GFV+F    +    A++A+  L G +     L  A ++K
Sbjct:   19 DPVRKSSLYVGDLDPQVTEADLMDTFRCMGPIASVRLCRDSLTGDSLRYAYVNFFSFSHASKALNFLNHTELKGKPMRIMWSQRDPLTRKTGIGNLFVKNLDPSITSGQLQHMFSNYGTILSCKVAEENGKSKGFGFVQFNSEESALAARDALHDTLVKGKKIYVSKFVKKSMRT------------------------------VVHEESSFTNLYVKNLPEDVTEDLLLDMFSRFGKVSSIAI-----MRNDQGK------SRGFGFVNFHTPEE----AMKAVEVLNGSLQGPNGLSVARAQK 279          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: CBX25354.1 (hypothetical_protein [Oryza brachyantha])

HSP 1 Score: 86.7 bits (213), Expect = 3.200e-13
Identity = 92/364 (25.27%), Postives = 149/364 (40.93%), Query Frame = 0
Query:  139 YKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGK---YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGEGVALSKSHGS-----------GVMHMDRGVSSSPPTMMQH--YAPSCRP 487
            Y E    P   S ++ G ++  ++  DL +  E VG+V  V + + K   R  GY FV   T++ A  A + + + +++G+RIRV  +Q    LFIG++  S T DD  +A    GP       ++     +   YG  ++     AE AR++M        T    V W  P+                                +S+  SV+V+    +   +T+  L + F   GE+  V+LP   G          G   R YGFVHF    + R  A+ A++  +     G  L C+ + KP A  +  E V+L  S+G+           G+M +      +P ++ Q   YAP   P
Sbjct:  108 YAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKDDSR--GYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVGPGVLKADLMKVSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKNLFERHGEITKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELAGQVLDCSLA-KPAATDKKDERVSLPSSNGAPLLPSYPPLGYGIMSVPSAYGVAPASITQPMLYAPRAPP 424          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: GAX72653.1 (hypothetical protein CEUSTIGMA_g109.t1 [Chlamydomonas eustigma])

HSP 1 Score: 86.7 bits (213), Expect = 3.200e-13
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 0
Query:  152 LFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQR-------------------NTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETA-----RREMHGRIL 295
            +F+GDL+  +T+A L   F  VG+     +  D  T R+ GYGFV   T+E+A  A  +MQ  ++  R+IRVGWAQ                    NT +++G++   T+  DL   F ++GP+ E    ++  K G YG  K+ +   A  A      RE+HGR+L
Sbjct:  111 IFVGDLSCDVTDAILFHTFSGVGQCSDARVMWDNSTGRSKGYGFVSFRTKEDAELAIGQMQGKQVGSRKIRVGWAQHKQEEGGPQDEMTIDRSDPSNTNVYLGNISPETSEQDLTAHFSVYGPISE----IKLHKKGGYGFVKYERHVAAVKAIVASHGRELHGRVL 273          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: AAO72701.1 (putative RNA-binding protein, partial [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13
Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487
            P   S +++G ++  ++  DL +  E VG+V  V + R K   R  GY FV   T+  A  A K + + +++G+RIRV  +Q    LFIG++  S T DD  +     GP  L  D   +      + YG  ++     AE AR+EM        +    V W  P+                                +S+  SV+V+    +   +T+  L   F   GE+  V+LP   G          G   R YGFVHF    + R  A+ A++  +     G  L C+ +K P A       P+    G  L  S+   G G+M +     ++P +  Q   YAP   P
Sbjct:  119 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 428          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_015619732.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >XP_015619733.1 PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >XP_015619734.1 PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X2 [Oryza sativa Japonica Group] >ABA95754.2 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] >ABG21876.1 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] >BAT15798.1 Os12g0136200 [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13
Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487
            P   S +++G ++  ++  DL +  E VG+V  V + R K   R  GY FV   T+  A  A K + + +++G+RIRV  +Q    LFIG++  S T DD  +     GP  L  D   +      + YG  ++     AE AR+EM        +    V W  P+                                +S+  SV+V+    +   +T+  L   F   GE+  V+LP   G          G   R YGFVHF    + R  A+ A++  +     G  L C+ +K P A       P+    G  L  S+   G G+M +     ++P +  Q   YAP   P
Sbjct:  107 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 416          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: ABA91387.2 (RNA recognition motif family protein, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13
Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487
            P   S +++G ++  ++  DL +  E VG+V  V + R K   R  GY FV   T+  A    K + + +++G+RIRV  +Q    LFIG++  S T DD  +A    GP  L  D   +      + YG  ++     AE AR+EM        +    V W  P+                                +S+  SV+V+    +   +T+  L   F   GE+  V+LP   G          G   R YGFVHF    + R  A+ A++  +     G  L C+ +K P A       P+    G  L  S+   G G+M +     ++P +  Q   YAP   P
Sbjct:  106 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSVS--------------------------TSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 415          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: BAF29121.1 (Os12g0136200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 4.100e-13
Identity = 93/356 (26.12%), Postives = 144/356 (40.45%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGP--LYEDQTYLRQGKYGK-YGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGA-------PVRLGEGVALSKSH---GSGVMHMDRGVSSSPPTMMQH--YAPSCRP 487
            P   S +++G ++  ++  DL +  E VG+V  V + R K   R  GY FV   T+  A  A K + + +++G+RIRV  +Q    LFIG++  S T DD  +     GP  L  D   +      + YG  ++     AE AR+EM        +    V W  P+                                +S+  SV+V+    +   +T+  L   F   GE+  V+LP   G          G   R YGFVHF    + R  A+ A++  +     G  L C+ +K P A       P+    G  L  S+   G G+M +     ++P +  Q   YAP   P
Sbjct:  120 PPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN--------------------------NDSASTSQVKSVYVK---NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG----------GHDNR-YGFVHF----KDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 429          
The following BLAST results are available for this feature:
BLAST of NO02G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_015902058.11.400e-1324.51PREDICTED: polyadenylate-binding protein 6-like [Z... [more]
PRW50946.11.400e-1332.47oligouridylate-binding 1-like [Chlorella sorokinia... [more]
EDK99170.11.900e-1325.47cytotoxic granule-associated RNA binding protein 1... [more]
XP_015866815.12.400e-1324.51PREDICTED: polyadenylate-binding protein 6-like [Z... [more]
CBX25354.13.200e-1325.27hypothetical_protein [Oryza brachyantha][more]
GAX72653.13.200e-1332.93hypothetical protein CEUSTIGMA_g109.t1 [Chlamydomo... [more]
AAO72701.14.100e-1326.12putative RNA-binding protein, partial [Oryza sativ... [more]
XP_015619732.14.100e-1326.12PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
ABA91387.24.100e-1326.12RNA recognition motif family protein, expressed [O... [more]
BAF29121.14.100e-1326.12Os12g0136200, partial [Oryza sativa Japonica Group... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007033NSK007033Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03730.1NO02G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574812gene_964Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g102gene370Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03730.1NO02G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03730 ID=NO02G03730|Name=NO02G03730|organism=Nannochloropsis oceanica|type=gene|length=2274bp
ATGgtacctgttgacaacatcttttattccatatatttccctccaaagga
ccaaccttcccaacatactgctgtcatcagACTGGTTCCAAAGAGTCCAC
CCTCGAGTCCTCCCCCACACGACCAACTAGACAGGCCGGGCTGCATGAGg
tacacgagtctagccgtgcttcgggaaatcactgtagagcatagcgattc
aattgcgggaataacatctagtcattatccgcctactctctattctaccc
aaaacaccactcccatttaatagACGCGACAAATAATGACGCCGGAGGAC
GCAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGA
AATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCT
CGGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGAC
AACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCA
CCCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGC
TGCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGAC
GGCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAG
TATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGG
TGCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGG
GACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCAC
GCGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCC
AAGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTT
ATAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTT
CGGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGA
AATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAA
ACTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCC
GATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTG
GCCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTC
CCGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGT
ACAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACA
GCTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGT
CCTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCG
TGGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTG
CGATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGA
TTGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGA
AGGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATC
GTGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCG
TGTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATA
CATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACT
ACTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTT
CCTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATC
AACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACC
AGCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAA
GAGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATA
TGACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTG
TGCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGAC
GGGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGG
TGGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATG
ATTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGG
GCCGTGCATGGAGGGGCGCGATAG
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protein sequence of NO02G03730.1

>NO02G03730.1-protein ID=NO02G03730.1-protein|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MTGSKESTLESSPTRPTRQAGLHETRQIMTPEDAATTTAARCTAATEEQE
ITKLTGSLATLSTASSSENRNAMKQFPDTTQEDNREHAHQKHQQRQQQQH
PQQQQYEQHQQEYNHQLHDHQQQYQHQYEEGHDGGLAAYKETQVEPKEDS
ILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMST
REEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAF
GLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYP
IRVVWHHPQTSSTGSGGPSASTFHHHSHGLQHVPPPPPHGVSSRPYSVHV
QFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRR
GYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGE
GVALSKSHGSGVMHMDRGVSSSPPTMMQHYAPSCRPLHHLHPDADGGVEY
MQHTHHPSTHQDMIPHYFYDLDHQHGGAGWQMVPPFLSSTSSSLPPSSAS
TATSGPHLKPYQQLRYQQPPLHYDYHPQHYQPQEAYFHGQPPPHNQMPPY
DMPDHAYYYSPPHSFTVHLPPPYLLPPSGQCLDGGRVHKSMGSNSESNMG
GPGNDLEYHEGTGYRHDSHGDPQGTGMTYPPTRAVHGGAR*
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Synonyms
Publications