|
|
Properties
| Property Name | Value |
|---|
| Description | Pentatricopeptide repeat containing protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:987167..993950 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
| IPR002885 | Pentatricopeptide_repeat |
Homology
BLAST of NO02G03670 vs. NCBI_GenBank
Match: EWM30237.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 169.1 bits (427), Expect = 1.100e-37 Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0
Query: 1394 VDGCGRGLDLVRRLLDSSRHKPTHVTFKTLFTLLLKHPDETKLHAALALLNEHLHVRSRTSSIYAPLIELCGATGQVDLAMRYLEEARRGGHVDKCVLRAARAAGL 1500
VDGCGRGLDLVRRLL+ RHKPTHVTFKTLFTLLLKHPD KL A+ LL++H+ RSRTS +YAPLIELCGATG+ D A+RY EEARRGGH+DK V+RAARAAG+
Sbjct: 1145 VDGCGRGLDLVRRLLEGRRHKPTHVTFKTLFTLLLKHPDPRKLQTAMKLLDDHVPARSRTSLVYAPLIELCGATGRADAAVRYFEEARRGGHLDKYVVRAARAAGM 1250
BLAST of NO02G03670 vs. NCBI_GenBank
Match: EWM30238.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 169.1 bits (427), Expect = 1.100e-37 Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 0
Query: 1394 VDGCGRGLDLVRRLLDSSRHKPTHVTFKTLFTLLLKHPDETKLHAALALLNEHLHVRSRTSSIYAPLIELCGATGQVDLAMRYLEEARRGGHVDKCVLRAARAAGL 1500
VDGCGRGLDLVRRLL+ RHKPTHVTFKTLFTLLLKHPD KL A+ LL++H+ RSRTS +YAPLIELCGATG+ D A+RY EEARRGGH+DK V+RAARAAG+
Sbjct: 1091 VDGCGRGLDLVRRLLEGRRHKPTHVTFKTLFTLLLKHPDPRKLQTAMKLLDDHVPARSRTSLVYAPLIELCGATGRADAAVRYFEEARRGGHLDKYVVRAARAAGM 1196
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G03670 ID=NO02G03670|Name=NO02G03670|organism=Nannochloropsis oceanica|type=gene|length=6784bp
ATGAGACGCGTGCGTGGACGTTTTCGAACGTGGGGAGCGCTCTATCTGAT
GGATTGgttcgacccttgctgacccacacacgtcacccctttgcatccat
cctattacataattttacagtggatgctacgagaggcctaatctcagCTC
TAGTGCATTCGGGGGAGACGAGGAGGTCTTTTTGTCCTCCTTGTCGGCGA
CGGCGGCTCTGATAAgtaagtgatacgcaccacaggaaagagaggggagg
ggtattatttggggggggcactgaagagacacggcagagagacagagaga
cagttgaggcacaggcagcttctaaatcatgatcagcccgtaaggcagag
tatctctactcttggtggcatgagcccgtgtgcgtgcgtgccctggccag
attttgatctcgtcggtgcgaatactgccatttctatgtcacaacaaacg
aatgagcaccaaggattgtagtctctctctaatccctcttttctcgtaga
ggggtggcctatgtaaggcagcttttctgacttgaaggcaaaagcaacgc
gtccgcaaaccaccactaattccctcctcccttcccttaaccggcacatc
taaacacgaagTTTTCCAATTTGTCCGAAGCATGACGTTCTTAAATACGA
ATGACTCGAATAGTATGCAGTCTATGTGGACTTTGCACCTCAGTAACTTC
TCCGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGGAGGAGGATGAGCA
ACAGCACAACCAGCAGCACGAGCAGCAAGATCAGCGACAGAAACAGCAGG
AGCTGCAGGCCAGCAGCATAGGTGGCGAAAAAATTGGAGGCAACGgtaag
cttttcattctgtatctatgctttgacctttttggtatttggattttact
ttccattaagcatgagttgtgattctcatgtgtttttgttttatcaccct
taaaagaccctagcaaacattgtggctcgatcatactcccaattctctca
cattttccaaaaacaaaacagTGACTACACTGGGAAAAGGTCATGCGGGG
AGCCAAATGCATGGAGACGATGCGAACTGGACGTCAACCGCAGGAGGGGA
TGGAGGGGAAGGGGCAGAGGGAGGGAGTCAGACGGGTGATTTGGACAAAG
CACTCGATAATACTCACGGCCGGCCGCATAACCTTTCTAACCTCAAGTCG
TGCCTCACGCCTTCGTCAGCTTCCACGGCGGCAGCAGCAGTGGCTGTGGC
TTTGAGTGCGAGTGACCAAGAGCAGCACAAGCATCAGCAGCAGAACTCTC
ATCAGAAGAATGTTTACCTGGACAACGGCGCTGGATGGCTGGCTGATTTC
AAAATTTCTGGTTCGACCACAACTTCCACCTCTACCTCTCCTGGAGCGCT
GTCCATGGCCAGCCTTCATACGCCGGCCCCTGCCCCGGGCTCGGTCTCGC
ACAACTCTTCCTCCTCCTCTTCCTCCTCGTCCTCGTGTTCGTCTTCACCC
TCCCCATCCTCCTCCACCTCGTCCTCATGTTCCTCCTCGTCGTCATCTAA
TTCAGGGACTTCGACTGCCTCCCTTTCTGCGTCTCATTGCTCCTCATCCT
TGCTGCTGGGCGCCTCCCCCTTCCATCCGCAGCTCTACACGACAACAGTC
AGTGACGTCGGCGGTTGGCGCGACGAAAAGGCAGACACGGTGGACATGCA
GGTCCATTCTAAACCACCCACCCCGCCGCCTTCTACTTGCTCGACGCTTA
TGGATACGGAGACGATAATGTCAAGCATGCATAGTGCTTTGCAAGGCGCT
AATTCCTCCCCTATCAAGTTCCATGGCCTCTACGACCCGCGGTCAACGCA
AGATGTGTCCAGGGCCTCGCTTTCAGTCTTGCCGCCGTCTTTCTCCTCAG
CCTCACCTCCGTTCACTTCCCCAGACTCCTTATCTTCCTCGTCCTCATCT
CATTCTACGTCCTCGTCGTCCTCGTCGTCCTCGTCGTCCTCGTCCTCATC
TCATTCTGCGTCCTCGTCGTCATCGTCGTCCTCGTCCTCCAACTCGCCCA
CGCTTGAAGGCATGTCGCAAGGGGGGCTTCAGCCGTACAAAGGTAGTGGC
CCCAGCCACTACAGCTCCTTCATGAATGGCAGTGACCAAGGGATGGCAAG
GCCTGTCCTGGTCCCTGACGGTGGACGCGTATTTATCTCATCTTCTACTC
GTTCGAAAACGCCGCCTAAGTTTGGGAAGCATATCTCCTTGGGTTCCATT
CTTCACTCTCCAGCCTCCGCACCAGTGGTGAAACATACTCAGCACAAGCC
GATCTATGTGGGAGCACCGGGGAGCCAAAGCAATAGCTTCCATTGTCAAC
CGCAGAGTCAGCCTTATTCCCACCAGCATTACCATTATCAGCAATTTCAG
CACAAGCACCACCAGGAGCAGCAGCAGTTGCAACAGGCTGCACCTACCCT
CCACCACTCCTCCCGACAGATGGGCTTTGTCGAGGCGCAAGCTGCTTCAC
CCTTCCCCGGCGTTCCGGCTCCTCCTGCTGCTGGTACCGCTGCTCCTCTC
GCTCTGTGTGAAGCCCCGGCGAGAAGCAGCAACAGCATTCGACACGGTAG
CAATATCAGAGCCGGAAGTGGCGGTGCTTTTCCCCTGGGTGTTGTACCGC
TCGATAAGATGTCTCGCACCGGCGGTGCAGTCCATAATTATCAAAATGGT
GTTTCCTTCCCGCGGAATTTTACTCATCCGCATTCTCCGTACCGGCAACT
GCCGCACCAACACCATCGAGAGTACACGCACAACCACCATGACCCAGCCC
CGGTTGTTCCGCAGCAGCCGTTCCCCACCCCAGTCCATTTCTACCACGCT
CCAACAGGCTTTACACATGCATCTGCTTCAATTCCAACAGCCGGGGACGT
CGATTTGCTGGAAGGCAGTTTTCGCAGCATAAATCTGACTTCGACCAGCG
CCCCAGCGTCCCGCAACAACGCCGGGGTGCTGCCTCGCCCGACGCCCGCG
CCGCCGAGCTCGCTGCCTTCGCATCATTCATTGCTGCGAGACCTTTTCCC
CGTCGGTTTTCACTCTCCTCCCTCGGCTTCTTCCGCTTCGTCCTCTCCTC
CCCATCTGGGACCACCTATGGCAGTGGTAGGCAGGGCGGTCATGCACTCA
CAACAGGAGCAGGAGCAGCAGCAGGAGCAGCAGAAGCAGCAGAAGCAGCA
GGAGCAGCAGGAGCAGGAGCAGGAGCAGCGAAAGCAGCAGCAGCGGTTGG
TGCAGCCCCAGCACGTGCCGCTGCTACCGGTAGTGACGAAGGCAGAGTCG
AGGTCGATGGGGATCAAGGCGCCAGGATTGCCTGGCTCAGATCAAAGCAA
TGTCGCTTATGCTTCGATTATTAAATCGTTTGCGAGCATCGGGGACGAGA
CTGGGGCAGAAGAAGCACTCAGTCAGCTGAAGGATAAAAATGTGAAGCCT
GATGTTGTGATGTACAACGCGTTGTTGTCTGCATATGCGGCGAATGGCAA
TGTTGAAGGAGCCGAGGCAGTTTTGGGGAGAATGAGGGCGGGAGGGGCGG
GTGATGGGAGGGCTGGGACCGGAGGGGGGGATTGGGGGAAGGGTGTTGAA
CCAAATGTGGTGACATATTCGAGCTTGATGAATGCGTATGCAATGTGCGG
GCAGGTTGAGGGAGCGGAGGCGGTTTTGGAACGCATGCAAGTGCAGGGTG
TACAGCCGAACCTGATCACATTTAACTCGCTCGCGACTGCTTATGCACGC
GATGGAAATATAGCGGGGGCGGCGGACGTGCTGCGGCGGATGCAGACAGA
CGCGCATGTGATGCCGAATACTGTATCATATAATGCAGTCTTGAGTGCTC
ATGCGCAATTAGGCTCGTGGAAGGGGGCGGAAGAGGTGATCCAACACATG
AGCAAGAGCAACGTGCAGCCCAACGCCGCGAGTTTCAATACATTGATTGA
TGCCTATGCAGCTAAGGGTAACGTGGAGGGCGCTGAAAATGTTTTGCAGC
GTATGAATAATCTAACGGAGGTGGAGCCGAATGTGATTTCCTTCTCCTCT
GTAATCAACGCTTATTCCATGAGGGGCGATTGGCGCGGGGCGGAAAATTT
GCTGAGGCGGATGCAGTACCAGGGTGTGCAACCTAATCTCGTAACATACA
ACTCTTTGATGACAGCTTACTCGAAAGACGGCAATTACAACGGCGCGGAG
GACGTATTGCGGCGCATGCACGCTGACCCACACGTCGAACCCACGACGAC
AACGTATAATTTGCTCATCAACAGCTATGCTCAGAAGGGAGCTTGGAGGG
GTGCGGAAGAGGTGCTCCAGCGTATGTTGTCCACCTCAATAACAGGAGGA
GGGAGTTTGATTGTGCCGACGATAATGACTTACAATAGCTTGATAAATGC
ACATGCCAAGGACGGAAACTACAATGGGGCCCTTTCTGTGTTGGCGCGGC
TATTGGAGCGAGGCGTAGAGCCCACCGTTACCACATTCAATTCGATTATC
AAAGCTTTCAGTAAGGAGGGGCACGCAGAGGGCGCGGAAGGTGTGCTGGC
ACGGATGATGCATGAATTTGGGCTGGCAGCGAATGTTACGACGTGGTCGA
GCGTGGTGAATGCTTATGCGACTAGAGGGGATTTCGCTGGGGCAGAGGAC
GTTTTGGTGCGTATGCAGGAGTATGGGGTTGAGCCGAACGTGACTACCTT
GTCGAGTGTGATTAATGCTTATGCAAATAAGGGCTCGTGGGCGGGGGCGG
AGAGTGTTTTGCGCCGTTTGGAGGCCAAAGGCCTGGAGTGCGATGTGATC
ACGATCAATAGTATGCTCAAGGTGTATGCAAATGCTCGAGACGTGGACGG
CTGTGGGCGGGGCCTGGACCTGGTGCGGCGCTTGCTCGATTCTAGCCGAC
ATAAACCCACGCACGTAACGTTCAAGACGCTTTTTACTCTTCTCCTTAAG
CATCCGGATGAAACAAAACTTCATGCGGCACTAGCATTGTTGAATGAGCA
TTTACACGTGCGTTCCCGTACTTCATCCATATACGCGCCGCTGATTGAAC
TGTGCGGGGCAACGGGGCAGGTGGATCTGGCAATGCGCTACTTGGAAGAA
GCCCGCCGAGGGGGGCATGTTGATAAGTGTGTTTTGCGGGCGGCGCGGGC
GGCCGGATTGAATACGGGGGGCGGTGGAGCTGGTTATGGTGGTGGGGACG
ATCATTTTCCTGGAAGGCGGGGGCGAGGTCAGGGCCACCATCATCACCAT
CAGCATTACGCCGCACCGGCACCAGTGGGGGTTGTGCCTTTGATGCGGCG
GTAGAGATAGAGTAGGCATGTTGCCTTAATTGGATGCTTCACGATCAAGT
TGCCAAGTGGCATTCATGATAAATATACTGTGCGCGGAATCGTATTTTTT
CCATTCTATTTAGATATTTATACATCGAGATCATGACAGTTGCTCAAAAG
TGACAGTAGGCAGCTAACCACGTTTTTGAATTACGCGCACGAGGATGGTG
GGGCTGACAGGGGAGGATAGCTAATGATGCCCAATTGTCTACAGTGTGGT
AGAAGTAAGCTGATGGAATCTGGAGTATATAAATTAAGTACGTAGACTAT
GTTATTCTTTTTCTGACCTAGCCTTTCGTAAGGCCGAGGATCACGTGACG
AGAAAAAAGTCATAAGAGATAGAAGTCAAGCAACATTCAGGAAGTAGGGA
TAATAATGAGAGAGAAAAAAAGAGGAAATAAATGACAGAGGGCGTATCTG
TGCATGTGTGGTGAATGTCCGAGACAGCAAATGGAGAAGTAGATGAATCT
AGGAAGGGCAAGTTGAGAGAATCGCACAAAAAGACGTCTTGGGCAAGCCA
CCAGAAGGAGTTTGTAAAGGGTTTTAGGGCTCCTAGCAGCAGCAGAAGAA
TGAAGGGCTTGCATTGAGTGAGCAAAGACAATCACACGCGACGTGTGGGA
GATTCTAAGGCGAACGACTAGACCAATTGTCAATGAACACAGAAACCTCG
CGCTTCGCACAAGCGAACAGCAAAAGAGTAAGCATTTGTTTCATGTAGAA
AAGAAGAGGGGAAAGAAGAGAATTAAAGAATGAGGGAACATGGGAGCAGC
CGGAGAAAAAAGTGTCGCCCGCTTTCAGATATCAGAAAGAGAGAAAAGAT
AACTATAGGAGCAAAAATACGAAAAAAAGAGCGACAGGAGGGGTAGGAGG
GAGCAGTCTGGTAAAGAGGCTTATCCTCTTTGGGAGAAAATGAGGGAAAG
TTTACCAAATACAAATAGGAGAATAGCAAAAATACTTAGACGACAAGCAA
ACCCTAGTTTAGGTTATAGCCCTTACCCAGTGGTAGCTGCGAGCACAATT
TGTGTGTGTTTAGGAATAAGGCGCTCTTCACCAAAATACCGAAAGAGCGC
GGCTGTCGCAATCTCAGCATATTGTCCGCATTCCGTGCGCCTATGTACGA
GGCAGAGGTATACGGTAGAAATGGGTTGAGAACAACAGCATAACAAAAAC
TGATGAAAGGCGGCCCATTTTGAATCAGGCAGATCATAGCAAAAAACATG
TCAGACAGAGAAGTCGGGTCGTCTCAGGTCTTTTGCGATTTCAAAAACAC
AGACCCATCGATCAACATTTGAACTTAGACACCTTTCATGCCTGTGTGAT
TTAGATTACGATATGACAAGAAGCACACAATTAAGTGATGACAAAACAAA
ACACCAAAAACTGACACGAATAAACGAAAGAGGAGAGAAAAATGAGGAAA
GAAGCAAACAAGAAGGGAATAAGAAAGGAGAGGA back to topprotein sequence of NO02G03670.1 >NO02G03670.1-protein ID=NO02G03670.1-protein|Name=NO02G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1547bp
MRRVRGRFRTWGALYLMDCSSAFGGDEEVFLSSLSATAALIIFQFVRSMT
FLNTNDSNSMQSMWTLHLSNFSEQQEQQEQQEQEEDEQQHNQQHEQQDQR
QKQQELQASSIGGEKIGGNVTTLGKGHAGSQMHGDDANWTSTAGGDGGEG
AEGGSQTGDLDKALDNTHGRPHNLSNLKSCLTPSSASTAAAAVAVALSAS
DQEQHKHQQQNSHQKNVYLDNGAGWLADFKISGSTTTSTSTSPGALSMAS
LHTPAPAPGSVSHNSSSSSSSSSSCSSSPSPSSSTSSSCSSSSSSNSGTS
TASLSASHCSSSLLLGASPFHPQLYTTTVSDVGGWRDEKADTVDMQVHSK
PPTPPPSTCSTLMDTETIMSSMHSALQGANSSPIKFHGLYDPRSTQDVSR
ASLSVLPPSFSSASPPFTSPDSLSSSSSSHSTSSSSSSSSSSSSSSHSAS
SSSSSSSSSNSPTLEGMSQGGLQPYKGSGPSHYSSFMNGSDQGMARPVLV
PDGGRVFISSSTRSKTPPKFGKHISLGSILHSPASAPVVKHTQHKPIYVG
APGSQSNSFHCQPQSQPYSHQHYHYQQFQHKHHQEQQQLQQAAPTLHHSS
RQMGFVEAQAASPFPGVPAPPAAGTAAPLALCEAPARSSNSIRHGSNIRA
GSGGAFPLGVVPLDKMSRTGGAVHNYQNGVSFPRNFTHPHSPYRQLPHQH
HREYTHNHHDPAPVVPQQPFPTPVHFYHAPTGFTHASASIPTAGDVDLLE
GSFRSINLTSTSAPASRNNAGVLPRPTPAPPSSLPSHHSLLRDLFPVGFH
SPPSASSASSSPPHLGPPMAVVGRAVMHSQQEQEQQQEQQKQQKQQEQQE
QEQEQRKQQQRLVQPQHVPLLPVVTKAESRSMGIKAPGLPGSDQSNVAYA
SIIKSFASIGDETGAEEALSQLKDKNVKPDVVMYNALLSAYAANGNVEGA
EAVLGRMRAGGAGDGRAGTGGGDWGKGVEPNVVTYSSLMNAYAMCGQVEG
AEAVLERMQVQGVQPNLITFNSLATAYARDGNIAGAADVLRRMQTDAHVM
PNTVSYNAVLSAHAQLGSWKGAEEVIQHMSKSNVQPNAASFNTLIDAYAA
KGNVEGAENVLQRMNNLTEVEPNVISFSSVINAYSMRGDWRGAENLLRRM
QYQGVQPNLVTYNSLMTAYSKDGNYNGAEDVLRRMHADPHVEPTTTTYNL
LINSYAQKGAWRGAEEVLQRMLSTSITGGGSLIVPTIMTYNSLINAHAKD
GNYNGALSVLARLLERGVEPTVTTFNSIIKAFSKEGHAEGAEGVLARMMH
EFGLAANVTTWSSVVNAYATRGDFAGAEDVLVRMQEYGVEPNVTTLSSVI
NAYANKGSWAGAESVLRRLEAKGLECDVITINSMLKVYANARDVDGCGRG
LDLVRRLLDSSRHKPTHVTFKTLFTLLLKHPDETKLHAALALLNEHLHVR
SRTSSIYAPLIELCGATGQVDLAMRYLEEARRGGHVDKCVLRAARAAGLN
TGGGGAGYGGGDDHFPGRRGRGQGHHHHHQHYAAPAPVGVVPLMRR* back to top
|