NO02G03410, NO02G03410 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G03410 vs. NCBI_GenBank
Match: CEM05376.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 218.0 bits (554), Expect = 7.100e-53 Identity = 112/157 (71.34%), Postives = 126/157 (80.25%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKAS 524 MIKFIL VNKQGQTRLS YY ++SIPERVALE E+IRKCLSR+ELQC F+EYR +KVIYRRYASL+FIVGVD + EL ILEFIH LVETLDKYFE+VCELDIMFNLEKAHFI+DEMV NG I++TNK N+L I+LMEKAS Sbjct: 1 MIKFILLVNKQGQTRLSQYYDYLSIPERVALEGELIRKCLSRTELQCSFMEYRQYKVIYRRYASLYFIVGVDSE--------------GENELSILEFIHTLVETLDKYFENVCELDIMFNLEKAHFILDEMVVNGCILETNKTNILGSIYLMEKAS 143
BLAST of NO02G03410 vs. NCBI_GenBank
Match: KUF80718.1 (AP-4 complex subunit sigma [Phytophthora nicotianae] >KUF82376.1 AP-4 complex subunit sigma [Phytophthora nicotianae] >KUF98617.1 hypothetical protein AM588_10007764 [Phytophthora nicotianae]) HSP 1 Score: 218.0 bits (554), Expect = 7.100e-53 Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKAS 524 MIKF+L VNKQGQTRL+ YY ++SI ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV DD ELGILEFIHALVET+DKYFESV IMFNLEKAHFI+DEMV NGYIV+TNK ++LKPIHLMEKAS Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLGRNETQCSFVEYRGYKVIYRRYASLFFIVGVKDDD-------------SENELGILEFIHALVETMDKYFESV----IMFNLEKAHFILDEMVMNGYIVETNKISILKPIHLMEKAS 140
BLAST of NO02G03410 vs. NCBI_GenBank
Match: XP_002290804.1 (sigma subunit of clathrin adaptor complex AP4 [Thalassiosira pseudonana CCMP1335] >EED92556.1 sigma subunit of clathrin adaptor complex AP4 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 215.7 bits (548), Expect = 3.500e-52 Identity = 107/164 (65.24%), Postives = 126/164 (76.83%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASASEESIF 531 MI FIL VNKQGQTRLSSYY WM + ERVALE+EIIRKCLSRSELQC F+EYRG KVIYRRYASLFFIVG D ELG+LEFIHALVET+D++ S+CELDIM+ LE+ HF++DEMV NGYIV+TNK+N+L+PI LM++ S E +F Sbjct: 1 MISFILMVNKQGQTRLSSYYEWMDMQERVALESEIIRKCLSRSELQCSFLEYRGFKVIYRRYASLFFIVGTKAD-----------IDNYENELGLLEFIHALVETMDRWAGSICELDIMYQLEQVHFLLDEMVMNGYIVETNKSNILRPIDLMDRESGKNEGMF 153
BLAST of NO02G03410 vs. NCBI_GenBank
Match: GBG34003.1 (AP-4 complex subunit sigma [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 215.3 bits (547), Expect = 4.600e-52 Identity = 108/157 (68.79%), Postives = 126/157 (80.25%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKAS 524 MIKF+L VNKQGQTRLSSYY W++I ER ALEAEIIRKCL+R+E QC F+E RG+KV+YRRYASLFFIVGVD D+ ELGILEFIH LVETLDKYF +VCELDIMFNLEKAHFI++EMV NG++V+ NKANVLKPI +++ S Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGVDQDE--------------ENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of NO02G03410 vs. NCBI_GenBank
Match: PHJ15736.1 (ap-4 complex subunit sigma [Cystoisospora suis]) HSP 1 Score: 214.9 bits (546), Expect = 6.000e-52 Identity = 107/159 (67.30%), Postives = 128/159 (80.50%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASAS 526 MIKFIL VNKQGQTRLS YY +++IPERVALE E+IRKCLSR+E+QC FI+YR + +IYRRYASL+FIVGV D+V EL +LEFIH LVETLDK+FE+VCELDIMF+LEK HFI+DEMV NG IV+TNKANVL PIH+M+ AS++ Sbjct: 1 MIKFILLVNKQGQTRLSQYYDFLTIPERVALEGELIRKCLSRTEMQCSFIQYRQYNIIYRRYASLYFIVGVQDDEV--------------NELAVLEFIHCLVETLDKFFENVCELDIMFHLEKTHFILDEMVMNGCIVETNKANVLAPIHMMDVASSN 145
BLAST of NO02G03410 vs. NCBI_GenBank
Match: XP_002181492.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46706.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 213.8 bits (543), Expect = 1.300e-51 Identity = 107/164 (65.24%), Postives = 126/164 (76.83%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASASEESIF 531 MI FIL VNKQGQTR SSYY W+S+ ERVALE+EIIRKCLSRSELQC F+EYRG+KVIYRRYASLFFIVG D ELG+LEFIH LVET+DK+ S+CELDIM+ LE+ HF+VDEMV NGYI +TN+AN+L+PI LME+ S +S+F Sbjct: 1 MISFILMVNKQGQTRYSSYYEWISMEERVALESEIIRKCLSRSELQCSFLEYRGYKVIYRRYASLFFIVGTKPD--------LAGTENNENELGMLEFIHTLVETMDKWAGSICELDIMYQLEEVHFLVDEMVQNGYIAETNRANILRPIALMERESQKADSMF 156
BLAST of NO02G03410 vs. NCBI_GenBank
Match: GAX22006.1 (AP-4 complex subunit sigma-1 [Fistulifera solaris] >GAX09374.1 AP-4 complex subunit sigma-1 [Fistulifera solaris]) HSP 1 Score: 212.6 bits (540), Expect = 3.000e-51 Identity = 107/164 (65.24%), Postives = 125/164 (76.22%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASASEESIF 531 MI FIL VNKQGQTR SSYY W+SI ER ALE+EIIRKCLSRSELQC F+EYRG+KVIYRRYASLFFIVG D ELG+LEFIHA+VE LDK+ S+CELDIM+ LE+ HF+VDEMV NGYIV+TNK N+L+PI LME+ S +++F Sbjct: 1 MISFILMVNKQGQTRFSSYYEWISIDERSALESEIIRKCLSRSELQCSFLEYRGYKVIYRRYASLFFIVGTKPD-----PFAGEGAENNENELGMLEFIHAVVECLDKWAGSICELDIMYQLEEVHFVVDEMVQNGYIVETNKVNILRPIALMERESQKSDAMF 159
BLAST of NO02G03410 vs. NCBI_GenBank
Match: PFH34372.1 (clathrin adaptor complex small chain family protein [Besnoitia besnoiti]) HSP 1 Score: 211.8 bits (538), Expect = 5.100e-51 Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASAS 526 MIKFIL VNKQGQTRLS YY +M IPERV LE+E+IRKCLSR+ELQC F++YR + VIYRRYASL+FIVGV ++V EL +LEF+H LVETLDK+FE+VCELDIMF+LEKAHFI+DEMV +G IV+TNKANVL PIH+M+ AS S Sbjct: 1 MIKFILMVNKQGQTRLSQYYDFMPIPERVTLESELIRKCLSRTELQCSFVQYRQYSVIYRRYASLYFIVGVKDEEV--------------NELAVLEFVHCLVETLDKFFENVCELDIMFHLEKAHFILDEMVMDGCIVETNKANVLAPIHMMDIASNS 145
BLAST of NO02G03410 vs. NCBI_GenBank
Match: ALD47953.1 (adaptor protein complex 4 subunit sigma [Isochrysis galbana]) HSP 1 Score: 209.9 bits (533), Expect = 1.900e-50 Identity = 107/160 (66.88%), Postives = 126/160 (78.75%), Query Frame = 0 Query: 368 IKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFE--SVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASAS 526 ++F+L VNKQGQTRL+ YY + ER ALEAE+IRKCLSR+E QC F EYRG+KV+YRRYASLFFIVGV+G+D EL ILEFIHALVETLD+YFE +VCELDIMFNLEKAHFI+DEMV NG I++TNK NVL PIHL++KA+AS Sbjct: 3 LRFVLMVNKQGQTRLAQYYERQPMGERCALEAEVIRKCLSRTETQCSFFEYRGYKVVYRRYASLFFIVGVEGED--------------ENELSILEFIHALVETLDRYFECANVCELDIMFNLEKAHFILDEMVMNGCIIETNKNNVLAPIHLLDKAAAS 148
BLAST of NO02G03410 vs. NCBI_GenBank
Match: XP_003885354.1 (putative AP-4 complex subunit sigma-1 [Neospora caninum Liverpool] >CBZ55326.1 putative AP-4 complex subunit sigma-1 [Neospora caninum Liverpool] >CEL70057.1 TPA: AP-4 complex subunit sigma-1, putative [Neospora caninum Liverpool]) HSP 1 Score: 208.4 bits (529), Expect = 5.600e-50 Identity = 107/159 (67.30%), Postives = 126/159 (79.25%), Query Frame = 0 Query: 367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVXXXXXXXXXXXXXXXELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASAS 526 MIKFIL VNKQGQTRLS YY ++ IPERVALE E+IRKCLSR+ELQC F++YR + VIYRRYASL+FIVGV +++ EL ILEFIH LVETLDK+FE+VCELDIMF+LEKAHFI+DEMV +G IV+TNKANVL IH+M+ AS S Sbjct: 1 MIKFILMVNKQGQTRLSQYYDFVPIPERVALEGELIRKCLSRTELQCSFVQYRQYSVIYRRYASLYFIVGVKDEEL--------------NELAILEFIHCLVETLDKFFENVCELDIMFHLEKAHFILDEMVMDGCIVETNKANVLSLIHMMDVASIS 145 The following BLAST results are available for this feature:
BLAST of NO02G03410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G03410 ID=NO02G03410|Name=NO02G03410|organism=Nannochloropsis oceanica|type=gene|length=2632bpback to top protein sequence of NO02G03410.1 >NO02G03410.1-protein ID=NO02G03410.1-protein|Name=NO02G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bpback to top Synonyms
Publications
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