NO02G03410.1, NO02G03410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03410.1
Unique NameNO02G03410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr2:914878..917509 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:914878..917509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03410.1 vs.
Match: XP_005856373.1 (AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526]; EKU19989.1 AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526]; EWM30223.1 ap-4 complex subunit sigma [Nannochloropsis gaditana])

HSP 1 Score: 293.9 bits (751), Expect = 1.000e-75
Identity = 148/168 (88.10%), Postives = 153/168 (91.07%), Query Frame = 0 
Query:  367 MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVAAGGGDGNAGGGGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPIHLMEKASASEESIFSRRG 535
            MI+FILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV+GDD        +  GG ENEL ILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMV NG+IVD NK N+LKPIHLMEKASASEESIFSRRG
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG 168
The following BLAST results are available for this feature:
BLAST of NO02G03410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856373.11.000e-7588.10AP-4 complex subunit sigma-1 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03410NO02G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03410.1NO02G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03410.1.cds1NO02G03410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03410.1.cds2NO02G03410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03410.1.cds3NO02G03410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03410.1 ID=NO02G03410.1|Name=NO02G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGGTCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATCT
CTGTCGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGCT
TGACTTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGCA
CGGGCGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGGC
ACTCTTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTCG
ACCAAATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTTG
AGCGCGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCATT
GCACGACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCACC
CGGACGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAGC
TGCGAAGGGTGGGGCGTGATGCCGGCAATTCATAATGTCACACAGTCATG
TGGTTTGTTGCACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCAG
TCCAGCAGCAGCGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGAG
CAACAAGATCGTCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTACC
ACCAGCATCGCAGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAAG
AAGGTATCCTGGGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCACG
CAGCACACAATGTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAGC
TCGCGGCGCCCAAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCGG
TCCGTCAAGGTAAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGTA
AATATCGATGCGTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGCA
TGAGATTCCTTTGGACGCGGACCAGCTGCAGGCTGCCAAGGCTAGGTTAG
GCGTAGCTTTTGGCGGTGCCCGCCGCACCATTCAGCTCGCAGCCACCTTC
TGCCACGCTTCTGCGCCTGCCCCAGCCCAAGCTTCATCACTTGGTAACAT
GATCAAGTTTATTCTCTTCGTTAACAAGCAAGGCCAAACCCGGCTTTCAA
GCTATTACACATGGATGAGTATCCCGGAGCGCGTGGCCTTGGAAGCAGAG
ATTATTCGCAAGTGCTTGTCGCGGTCCGAATTGCAGTGTCAATTCATCGA
GTACCGGGGGCATAAGGTCATATACCGGCGGTACGCATCACTCTTCTTCA
TTGTTGGCGTGGACGGGGATGATGTCGCGGCCGGCGGTGGGGATGGGAAT
GCGGGGGGGGGAGGGGAGAATGAGCTGGGCATTTTGGAGTTCATTCATGC
GTTAGTGGAGACGTTGGACAAGTACTTTGAGAGCGTCTGCGAGCTCGACA
TCATGTTCAATTTAGAAAAGGCACACTTCATTGTGGATGAGATGGTTGGT
AATGGCTATATTGTGGACACTAACAAGGCCAATGTTCTGAAGCCTATCCA
TCTCATGGAGAAGGCTAGTGCAAGCGAGGAGTCTATTTTCTCGAGAAGAG
GGTGA
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protein sequence of NO02G03410.1

>NO02G03410.1-protein ID=NO02G03410.1-protein|Name=NO02G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MVHLVPFIFNLFLGAHLCRAARISAGYEGEQQRLTLQCTYAETARVQLAA
RALGMCLDVKIDDVKEALFLQKQHGNLLGGIDLDQITTCLQAQKEEKFVL
SAACREELARFDEKASLHDGSPASKIASIFRDHPDEMCACIEAIDVSEIS
CEGWGVMPAIHNVTQSCGLLHGSPVLTPSKDFPVQQQRQQHQHPEQPDQE
QQDRQSAPATIDGPPLPPASQPSHRLDPQFGGEEGILGNFREPYHPDERT
QHTMYCYEAAVHLCPQARGAQNPLIFQKCVERAVRQGKLGGECLIVLKEV
NIDALALQEIQGLLGRHEIPLDADQLQAAKARLGVAFGGARRTIQLAATF
CHASAPAPAQASSLGNMIKFILFVNKQGQTRLSSYYTWMSIPERVALEAE
IIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVDGDDVAAGGGDGN
AGGGGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVG
NGYIVDTNKANVLKPIHLMEKASASEESIFSRRG*
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mRNA from alignment at chr2:914878..917509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03410.1 ID=NO02G03410.1|Name=NO02G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp|location=Sequence derived from alignment at chr2:914878..917509- (Nannochloropsis oceanica)
ATGGTCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATCT
CTGTCGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGCT
TGACTTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGCA
CGGGCGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGGC
ACTCTTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTCG
ACCAAATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTTG
AGCGCGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCATT
GCACGACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCACC
CGGACGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAGC
TGCGAAGGGTGGGGCGTGGTAAGAGAGTGGAAGGGTGTGTGTGAGTGTGT
GTGTGACTCTCTCTCTCTCTTTACGAATGTCAAGCAAGCATGAGGACTTC
ATGCTTGTCACCCTCAAATACTTCAGATATTTGAATAAAACACACATTGA
TGAATGCGAGCCGCCGCGCTCCCCCTCTTTCTACATCTTCTTTTGTATGC
TAATCCAACACATTGATTGTCTCTCGTCAACTCAACCCCGTCACATCTCT
GCCCCGACCTACTATTAGATGCCGGCAATTCATAATGTCACACAGTCATG
TGGTTTGTTGCACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCAG
TCCAGCAGCAGCGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGAG
CAACAAGATCGTCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTACC
ACCAGCATCGCAGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAAG
AAGGTATCCTGGGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCACG
CAGCACACAATGTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAGC
TCGCGGCGCCCAAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCGG
TCCGTCAAGGTAAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGTA
AATATCGATGCGTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGCA
TGAGATTCCTTTGGACGCGGACCAGCTGCAGTGCGTAGAAGAAGTGTCGG
CGGAATGTTTGGACGCAAAAAATTCAGGCCAGCTTCGTGTTTGTGTTAAT
AGGGGGGTCAGAAAGCAAACGCTGCGTCCAGCATGCCTCAGTTATTTGTA
CCAGTAGCGTCCTCACAGTTTGTACAGGTTGAGAAAAGCTAAATTACTGC
GTGGACTTCATAATTGTGGGATGTGATTTAGAAAATCGGCCAAAAGCTTG
TGTGGCTCTGACACATGTATACCCGTTCTTGACCACAATAAAAATATAGA
AAAAAACGATTCGTTCTATCTCAGGATCCCGCTTATATTAATCCCAATAG
ATACTTGCATCCTCTTTCTTATAGACATTTGTACATTTTGTCAATTTGAA
GTTATTCCTCTCTTGTACCGTCCCCGTTTGTCTCATGGCGTGGTGACGGT
GGCTCCGAGTGGCGTTGCCTTTCGTTCAAATGTATATACCACGCCCTTTT
TGTCGTCGTGAAATCTCTTATACGGACGGTAAGCTTCAGCTGGAGGATGG
GCAATTTGGCTTTTTTGTGTTAGGTAGAGTTCGATATCTGCACAGACATT
CGCATGAAAACAGAAGGCATTTCAAGATCGAACACACTTTAAATCAGTAT
GTTCGCTAGAGTACGCATGTAAGCGTCGCACATCATTCCTCGTCCCATGG
CCAACTCATACCCGGCAGTACCCGTAGCGGCAGCATTTATGCAATTGGAA
GAAACCACGCCCCTTTCTGCATGGCTCAGCCATCTGGCTACTTATTCATC
TCCACAGGGCTGCCAAGGCTAGGTTAGGCGTAGCTTTTGGCGGTGCCCGC
CGCACCATTCAGCTCGCAGCCACCTTCTGCCACGCTTCTGCGCCTGCCCC
AGCCCAAGCTTCATCACTTGGTAACATGATCAAGTTTATTCTCTTCGTTA
ACAAGCAAGGCCAAACCCGGCTTTCAAGCTATTACACATGGATGAGTATC
CCGGAGCGCGTGGCCTTGGAAGCAGAGATTATTCGCAAGTGCTTGTCGCG
GTCCGAATTGCAGTGTCAATTCATCGAGTACCGGGGGCATAAGGTCATAT
ACCGGCGGTACGCATCACTCTTCTTCATTGTTGGCGTGGACGGGGATGAT
GTCGCGGCCGGCGGTGGGGATGGGAATGCGGGGGGGGGAGGGGAGAATGA
GCTGGGCATTTTGGAGTTCATTCATGCGTTAGTGGAGACGTTGGACAAGT
ACTTTGAGAGCGTCTGCGAGCTCGACATCATGTTCAATTTAGAAAAGGCA
CACTTCATTGTGGATGAGATGGTTGGTAATGGCTATATTGTGGACACTAA
CAAGGCCAATGTTCTGAAGCCTATCCATCTCATGGAGAAGGCTAGTGCAA
GCGAGGAGTCTATTTTCTCGAGAAGAGGGTGA
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Coding sequence (CDS) from alignment at chr2:914878..917509-

>NO02G03410.1 ID=NO02G03410.1|Name=NO02G03410.1|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at chr2:914878..917509- (Nannochloropsis oceanica)
ATGGTCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATCT
CTGTCGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGCT
TGACTTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGCA
CGGGCGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGGC
ACTCTTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTCG
ACCAAATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTTG
AGCGCGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCATT
GCACGACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCACC
CGGACGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAGC
TGCGAAGGGTGGGGCGTGATGCCGGCAATTCATAATGTCACACAGTCATG
TGGTTTGTTGCACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCAG
TCCAGCAGCAGCGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGAG
CAACAAGATCGTCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTACC
ACCAGCATCGCAGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAAG
AAGGTATCCTGGGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCACG
CAGCACACAATGTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAGC
TCGCGGCGCCCAAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCGG
TCCGTCAAGGTAAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGTA
AATATCGATGCGTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGCA
TGAGATTCCTTTGGACGCGGACCAGCTGCAGGCTGCCAAGGCTAGGTTAG
GCGTAGCTTTTGGCGGTGCCCGCCGCACCATTCAGCTCGCAGCCACCTTC
TGCCACGCTTCTGCGCCTGCCCCAGCCCAAGCTTCATCACTTGGTAACAT
GATCAAGTTTATTCTCTTCGTTAACAAGCAAGGCCAAACCCGGCTTTCAA
GCTATTACACATGGATGAGTATCCCGGAGCGCGTGGCCTTGGAAGCAGAG
ATTATTCGCAAGTGCTTGTCGCGGTCCGAATTGCAGTGTCAATTCATCGA
GTACCGGGGGCATAAGGTCATATACCGGCGGTACGCATCACTCTTCTTCA
TTGTTGGCGTGGACGGGGATGATGTCGCGGCCGGCGGTGGGGATGGGAAT
GCGGGGGGGGGAGGGGAGAATGAGCTGGGCATTTTGGAGTTCATTCATGC
GTTAGTGGAGACGTTGGACAAGTACTTTGAGAGCGTCTGCGAGCTCGACA
TCATGTTCAATTTAGAAAAGGCACACTTCATTGTGGATGAGATGGTTGGT
AATGGCTATATTGTGGACACTAACAAGGCCAATGTTCTGAAGCCTATCCA
TCTCATGGAGAAGGCTAGTGCAAGCGAGGAGTCTATTTTCTCGAGAAGAG
GGTGA
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Synonyms
Publications