NO02G03060, NO02G03060 (gene) Nannochloropsis oceanica

Overview
NameNO02G03060
Unique NameNO02G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1331
Alignment locationchr2:820944..822274 +

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Properties
Property NameValue
DescriptionOrmdl family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:820944..822274 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005789endoplasmic reticulum membrane
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007203ORMDL
Homology
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_024586813.1 (orm1-like protein [Plasmopara halstedii] >CEG50444.1 orm1-like protein [Plasmopara halstedii])

HSP 1 Score: 120.6 bits (301), Expect = 7.300e-24
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0
Query:  117 GMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            G  L   +V+H VV F + HW+KGSPD+ S G++  LT +EQID G PWT TKK   +I T L  AAS  TDY+  +L +N P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    9 GDALTAVNVIHGVVSFGIMHWVKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYNTRHLLVNFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 120          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_008613679.1 (hypothetical protein SDRG_09515 [Saprolegnia diclina VS20] >EQC32993.1 hypothetical protein SDRG_09515 [Saprolegnia diclina VS20])

HSP 1 Score: 119.0 bits (297), Expect = 2.100e-23
Identity = 70/186 (37.63%), Postives = 98/186 (52.69%), Query Frame = 0
Query:   58 GGHGTSYSEKYFDGDRPAAM----YNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPD--NFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAY 238
            G H   +        R A M     NKNV W+    F   Y G +  F+  +   VL     W  V     +VH  + F + HWIKGSP+  +   GE+  +T +EQIDDG PWT  KK   L+ T L+  AS  ++YD   L +N P++I+L I+ K+PE+H VR+FG N T GIDD  ++  A+
Sbjct:   11 GFHSKKHLAATMSSSRSATMMEPCLNKNVNWMDSPGFAAFY-GILLLFIYTIVTMVLPATWSWTGV----SIVHGFISFMIMHWIKGSPEEGSMGSGEYREMTFYEQIDDGRPWTWVKKFLILVPTALLLLASVSSNYDTTQLFINCPIWIVL-ILAKLPELHGVRLFGINGTVGIDDDAKNHFAH 190          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_012201915.1 (hypothetical protein SPRG_07067 [Saprolegnia parasitica CBS 223.65] >KDO27478.1 hypothetical protein SPRG_07067 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 117.9 bits (294), Expect = 4.700e-23
Identity = 64/161 (39.75%), Postives = 93/161 (57.76%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPD--NFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAY 238
            NKNV W+    F   Y G +  F+  +   VL     W  V     +VH  + F + HWIKGSP+  +   GE+  +T +EQIDDG PWT  KK   L+ T L+  AS  ++YD   L +N P++I+L ++ K+PE+H VR+FG N T GIDD  ++ +A+
Sbjct:   15 NKNVNWMDSPGFAAFY-GILLLFIYTIVTMVLPATWSWTGV----SIVHGFISFMIMHWIKGSPEEGSMGSGEYREMTFYEQIDDGRPWTWVKKFLILVPTALLLLASVSSNYDTTQLFINCPIWIIL-VLAKLPELHGVRLFGINGTVGIDDDAKNHVAH 169          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: OQR81182.1 (ORM1-like protein [Achlya hypogyna])

HSP 1 Score: 117.5 bits (293), Expect = 6.200e-23
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDN--FSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    F   Y GF+  F+     TVL  +  W  V    ++VH  + F + HWIKGSP+      G +  +T +EQIDDG PWT  KK   L+ T L+  AS  ++YD   L +N P++I+L I+ K+PE+H VR+FG N T GIDD
Sbjct:    7 NKNVNWMDSPGFTAFY-GFLLLFIYAAVKTVLPASWSWTGV----NIVHGFISFIIMHWIKGSPEEGPTDAGLYREMTFFEQIDDGRPWTWVKKFLILVPTALLLLASVSSNYDTTQLCINCPIWIVL-ILAKLPELHGVRLFGINGTVGIDD 153          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: OQS00160.1 (hypothetical protein THRCLA_06180 [Thraustotheca clavata])

HSP 1 Score: 114.0 bits (284), Expect = 6.800e-22
Identity = 66/159 (41.51%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDN--FSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDAL 236
            NKNV W+    F   Y      F+ +   TV+     W  V    ++VH VV F + HWIKGSP++     G +  LT +EQIDDG PWT  KK   L+ T L+  AS  ++YD   L +N P++I+L I+ K+PE+H VR+FG N T GIDD     L
Sbjct:    9 NKNVNWMDSPGFAAFY-AITLLFIYVAVQTVVPLNWSWTGV----NIVHGVVSFVIMHWIKGSPEDGPNDSGLYRELTFYEQIDDGRPWTWVKKFLILVPTALLLLASVSSNYDTKQLFINCPIWIVL-ILAKLPELHGVRLFGINGTVGIDDAESKKL 161          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_005644615.1 (ORMDL-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE20071.1 ORMDL-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 112.8 bits (281), Expect = 1.500e-21
Identity = 61/147 (41.50%), Postives = 83/147 (56.46%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRL--TVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNK 224
            NKNVEWL     W        F V L+ L   +LS   D G+     H++H V+ +YL HW KGSP    QG+++ LT WEQ+DDG+  T T+K   L+   L   A++ TDY    L +N  V ++L +I K P MH+VR+FG NK
Sbjct:   31 NKNVEWLSAPEAW-------TFIVALICLGWLILSLFMDSGLAWTYVHLLHGVITYYLLHWNKGSPVQMDQGKYDSLTFWEQLDDGVQNTNTRKFLTLVPVALFLLATHGTDYRRQPLGLNLIVLLVL-VIAKFPAMHKVRIFGINK 169          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_008869323.1 (hypothetical protein H310_06151 [Aphanomyces invadans] >ETW02718.1 hypothetical protein H310_06151 [Aphanomyces invadans])

HSP 1 Score: 112.5 bits (280), Expect = 2.000e-21
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQ---GEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            N+NV W+    F   Y+    F + ++  T++     W  V    ++VH    F   HWIKGSPD       G++  LT +EQIDDG PWT  KK   ++ TVL+  AS +++YD   L +N PV+++L I+ K+PE+H VR+FG N+T GIDD
Sbjct:   15 NRNVNWMDSPGFMGFYV-ITLFLIYIIVHTIMPVDWAWTSV----NIVHGFFSFVAMHWIKGSPDEDPSSLGGQYRELTFYEQIDDGRPWTWIKKFLIVVPTVLLLWASVMSNYDTIQLLINVPVWVVL-ILAKLPELHGVRLFGINRTVGIDD 162          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_021757725.1 (uncharacterized protein C119.09c-like [Chenopodium quinoa])

HSP 1 Score: 112.5 bits (280), Expect = 2.000e-21
Identity = 58/144 (40.28%), Postives = 87/144 (60.42%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWN 223
            NKN EW+ Y   W +Y+ F+ FF  LL L++L  +   G+   + H+ H +V ++ FHW KG+P +  QG +NGLT WEQI++G   T+ +K F ++  +L   AS+ TDY    L +N     +L ++ K P MHRVR+FG N
Sbjct:   12 NKNTEWVDYPGLWSIYI-FILFFSWLLILSLLGCSS--GLAWTIVHLSHFIVTYHFFHWKKGTPFSEDQGIYNGLTWWEQIENGQQLTRNRKFFTVVPVLLYLIASHTTDYQNPMLFLNTLAVFVL-VVAKFPRMHRVRIFGIN 151          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_010676855.1 (PREDICTED: uncharacterized protein C119.09c [Beta vulgaris subsp. vulgaris] >KMT12431.1 hypothetical protein BVRB_5g103630 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 111.3 bits (277), Expect = 4.400e-21
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   74 PAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWN 223
            P    NKN EW+ Y   W +Y+ F+ FF  LL L++L  +   GM   + H+ H  V ++ FHW KG+P    QG +NGLT WEQI++G   T+ +K   ++  VL   AS+ TDY    L  N     +L ++ K P MHRVR+FG N
Sbjct:   12 PPKDVNKNTEWVTYPGVWTIYI-FIVFFAWLLVLSLLGCSP--GMAWTIVHLSHFFVTYHCFHWKKGTPFADDQGMYNGLTWWEQIENGQQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLIFNTLAVFVL-VVAKFPHMHRVRIFGIN 156          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: GAQ77913.1 (ORMDL family protein [Klebsormidium nitens])

HSP 1 Score: 110.9 bits (276), Expect = 5.800e-21
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 0
Query:   69 FDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDY-DLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWN 223
            F  D PA + NKN  WL Y   W  Y+  + F   +  L V       G+     H++H V+ FYL HW KGSP    QG ++ LT+WEQIDDG+ +T+TKK F  +  VL   AS+ TDY D  + A+N     +L ++ K P +H+VR+FG N
Sbjct:   36 FHADPPADL-NKNTSWLLYPGIWTSYVLIIGF---VWMLFVSLGGVPSGLAWTYVHLLHFVITFYLLHWRKGSPFGEDQGIYDRLTMWEQIDDGVQFTRTKKFFTAVPVVLFLIASHATDYHDHPFFALNVLAVGIL-LLAKTPMLHKVRIFGIN 185          
The following BLAST results are available for this feature:
BLAST of NO02G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024586813.17.300e-2450.44orm1-like protein [Plasmopara halstedii] >CEG50444... [more]
XP_008613679.12.100e-2337.63hypothetical protein SDRG_09515 [Saprolegnia dicli... [more]
XP_012201915.14.700e-2339.75hypothetical protein SPRG_07067 [Saprolegnia paras... [more]
OQR81182.16.200e-2342.48ORM1-like protein [Achlya hypogyna][more]
OQS00160.16.800e-2241.51hypothetical protein THRCLA_06180 [Thraustotheca c... [more]
XP_005644615.11.500e-2141.50ORMDL-domain-containing protein [Coccomyxa subelli... [more]
XP_008869323.12.000e-2140.26hypothetical protein H310_06151 [Aphanomyces invad... [more]
XP_021757725.12.000e-2140.28uncharacterized protein C119.09c-like [Chenopodium... [more]
XP_010676855.14.400e-2140.27PREDICTED: uncharacterized protein C119.09c [Beta ... [more]
GAQ77913.15.800e-2140.65ORMDL family protein [Klebsormidium nitens][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006954NSK006954Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03060.1NO02G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574550gene_895Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g180gene306Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03060.1NO02G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03060 ID=NO02G03060|Name=NO02G03060|organism=Nannochloropsis oceanica|type=gene|length=1331bp
ATGACCCACCACTTCGCACATGTTCCCTTTCAAACGTTCCCCACCCAATC
CTCAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGC
GAGCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATC
ATCATgtaagtgcgccgtggacggagacggatagagacttcgtgcggtag
catgataggacgacaggtgtagggtgctcatgaagatttctgaatcgtga
tcgcggcgcgattgtgatgcggccttatttgcgggttttcttacgaacgc
acccacttcaattttggagtgctcgtgctccgagaggggtgcaaggaaag
cccggggcttccccccctatctatggacatgttttgggcgtcgctaacac
tcgttttatggcttgctcatcatgagttgtgatgctgtccctcatttgcg
gagaccagcaggagagggaggcctttattccgtcctgccccccatgggca
attctcgtatctttttacaagggaccatactaactacatcctttccttcc
tccgttttttactggcccctatacacagGGGGATGCACCGGGACGGCGGG
CACGGGACGTCCTACTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGC
CATGTACAATAAGAATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGT
TGTATCTGGGGTTTGTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTC
TTGAGCAAGGCTGAGGATTGGGGAATGGTTTTGATGGTGACTCATGTGGT
GCACAACGTGgtgagtgggcgagaaagaaatgggaagaaggcggaaaaac
ggagacgagaccagaagttggattgcaaaaagaaaagccgacggtaactc
aaatccgtcgagcttaccagtcatcgaatcacctcataaccccacgagca
cagGTATTCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGACAATTT
TAGTCAAGGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGACGACG
GCATCCCCTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATACTGTC
TTGGTGTTTGCTGCCTCCTACGTGACTGATTACGACTTGAATTATCTGGC
GATGAATGGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGATCCCGG
AGATGCACCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGATCGAT
GACGTTAATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGC
CGCCACGTTAGGCACCAAGAAGAGTCGGTGA
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protein sequence of NO02G03060.1

>NO02G03060.1-protein ID=NO02G03060.1-protein|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MTHHFAHVPFQTFPTQSSAHTATRQSQHGDLGARATLISPLCFLARDYTI
IMGMHRDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAF
FVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEF
NGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPV
YILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAYSATAAGSAATLGT
KKSR*
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Synonyms
Publications