NO02G03060.1, NO02G03060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03060.1
Unique NameNO02G03060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr2:820944..822274 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:820944..822274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03060.1 vs.
Match: EWM30225.1 (ormdl family protein [Nannochloropsis gaditana])

HSP 1 Score: 336.7 bits (862), Expect = 6.500e-89
Identity = 162/200 (81.00%), Postives = 174/200 (87.00%), Query Frame = 0 
Query:   56 RDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAY----SATAAGSAATLGTK 252
            RD G+G  YS  YFDGDRPA++YNKNVEWLRY HFWWLYLGFVAFFVTLLRLTVLSK ED G VL VTHVVHN+VFFYLFHWIKGSPDNFSQGEFNGLTLWEQI+DGIPWTKTKKLFFL+HT LVFAASYVTDYD +YLA+N PVY+ LGIIPKIPEMHRVRVFGWNKT GIDDV +D L+     +ATAAG AA  G K
Sbjct:    4 RDSGNGL-YSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAGKK 202
The following BLAST results are available for this feature:
BLAST of NO02G03060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30225.16.500e-8981.00ormdl family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03060NO02G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03060.1NO02G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03060.1.cds1NO02G03060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03060.1.cds2NO02G03060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03060.1.cds3NO02G03060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03060.1 ID=NO02G03060.1|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGACCCACCACTTCGCACATGTTCCCTTTCAAACGTTCCCCACCCAATC
CTCAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGC
GAGCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATC
ATCATGGGGATGCACCGGGACGGCGGGCACGGGACGTCCTACTCGGAAAA
GTATTTTGACGGGGACAGACCTGCGGCCATGTACAATAAGAATGTTGAGT
GGCTCCGATACGCTCATTTCTGGTGGTTGTATCTGGGGTTTGTCGCATTC
TTTGTTACGCTTTTGCGATTGACGGTCTTGAGCAAGGCTGAGGATTGGGG
AATGGTTTTGATGGTGACTCATGTGGTGCACAACGTGGTATTCTTCTACC
TCTTCCACTGGATCAAGGGCTCCCCCGACAATTTTAGTCAAGGCGAATTC
AACGGACTCACGCTTTGGGAACAAATCGACGACGGCATCCCCTGGACCAA
GACCAAAAAGCTCTTCTTCCTTATACATACTGTCTTGGTGTTTGCTGCCT
CCTACGTGACTGATTACGACTTGAATTATCTGGCGATGAATGGCCCTGTG
TATATTCTGTTGGGGATCATACCCAAGATCCCGGAGATGCACCGTGTGCG
TGTGTTTGGCTGGAACAAGACGACAGGGATCGATGACGTTAATGAGGATG
CGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGCCGCCACGTTAGGCACC
AAGAAGAGTCGGTGA
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protein sequence of NO02G03060.1

>NO02G03060.1-protein ID=NO02G03060.1-protein|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MTHHFAHVPFQTFPTQSSAHTATRQSQHGDLGARATLISPLCFLARDYTI
IMGMHRDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAF
FVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEF
NGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPV
YILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAYSATAAGSAATLGT
KKSR*
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mRNA from alignment at chr2:820944..822274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03060.1 ID=NO02G03060.1|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at chr2:820944..822274+ (Nannochloropsis oceanica)
ATGACCCACCACTTCGCACATGTTCCCTTTCAAACGTTCCCCACCCAATC
CTCAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGC
GAGCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATC
ATCATGTAAGTGCGCCGTGGACGGAGACGGATAGAGACTTCGTGCGGTAG
CATGATAGGACGACAGGTGTAGGGTGCTCATGAAGATTTCTGAATCGTGA
TCGCGGCGCGATTGTGATGCGGCCTTATTTGCGGGTTTTCTTACGAACGC
ACCCACTTCAATTTTGGAGTGCTCGTGCTCCGAGAGGGGTGCAAGGAAAG
CCCGGGGCTTCCCCCCCTATCTATGGACATGTTTTGGGCGTCGCTAACAC
TCGTTTTATGGCTTGCTCATCATGAGTTGTGATGCTGTCCCTCATTTGCG
GAGACCAGCAGGAGAGGGAGGCCTTTATTCCGTCCTGCCCCCCATGGGCA
ATTCTCGTATCTTTTTACAAGGGACCATACTAACTACATCCTTTCCTTCC
TCCGTTTTTTACTGGCCCCTATACACAGGGGGATGCACCGGGACGGCGGG
CACGGGACGTCCTACTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGC
CATGTACAATAAGAATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGT
TGTATCTGGGGTTTGTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTC
TTGAGCAAGGCTGAGGATTGGGGAATGGTTTTGATGGTGACTCATGTGGT
GCACAACGTGGTGAGTGGGCGAGAAAGAAATGGGAAGAAGGCGGAAAAAC
GGAGACGAGACCAGAAGTTGGATTGCAAAAAGAAAAGCCGACGGTAACTC
AAATCCGTCGAGCTTACCAGTCATCGAATCACCTCATAACCCCACGAGCA
CAGGTATTCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGACAATTT
TAGTCAAGGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGACGACG
GCATCCCCTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATACTGTC
TTGGTGTTTGCTGCCTCCTACGTGACTGATTACGACTTGAATTATCTGGC
GATGAATGGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGATCCCGG
AGATGCACCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGATCGAT
GACGTTAATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGC
CGCCACGTTAGGCACCAAGAAGAGTCGGTGA
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Coding sequence (CDS) from alignment at chr2:820944..822274+

>NO02G03060.1 ID=NO02G03060.1|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr2:820944..822274+ (Nannochloropsis oceanica)
ATGACCCACCACTTCGCACATGTTCCCTTTCAAACGTTCCCCACCCAATC
CTCAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGC
GAGCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATC
ATCATGGGGATGCACCGGGACGGCGGGCACGGGACGTCCTACTCGGAAAA
GTATTTTGACGGGGACAGACCTGCGGCCATGTACAATAAGAATGTTGAGT
GGCTCCGATACGCTCATTTCTGGTGGTTGTATCTGGGGTTTGTCGCATTC
TTTGTTACGCTTTTGCGATTGACGGTCTTGAGCAAGGCTGAGGATTGGGG
AATGGTTTTGATGGTGACTCATGTGGTGCACAACGTGGTATTCTTCTACC
TCTTCCACTGGATCAAGGGCTCCCCCGACAATTTTAGTCAAGGCGAATTC
AACGGACTCACGCTTTGGGAACAAATCGACGACGGCATCCCCTGGACCAA
GACCAAAAAGCTCTTCTTCCTTATACATACTGTCTTGGTGTTTGCTGCCT
CCTACGTGACTGATTACGACTTGAATTATCTGGCGATGAATGGCCCTGTG
TATATTCTGTTGGGGATCATACCCAAGATCCCGGAGATGCACCGTGTGCG
TGTGTTTGGCTGGAACAAGACGACAGGGATCGATGACGTTAATGAGGATG
CGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGCCGCCACGTTAGGCACC
AAGAAGAGTCGGTGA
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Synonyms
Publications