NO02G03060, NO02G03060 (gene) Nannochloropsis oceanica

Overview
NameNO02G03060
Unique NameNO02G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1331
Alignment locationchr2:820944..822274 +

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Properties
Property NameValue
DescriptionOrmdl family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:820944..822274 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005789endoplasmic reticulum membrane
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007203ORMDL
Homology
BLAST of NO02G03060 vs. NCBI_GenBank
Match: EWM30225.1 (ormdl family protein [Nannochloropsis gaditana])

HSP 1 Score: 336.7 bits (862), Expect = 6.500e-89
Identity = 162/200 (81.00%), Postives = 174/200 (87.00%), Query Frame = 0
Query:   56 RDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAY----SATAAGSAATLGTK 252
            RD G+G  YS  YFDGDRPA++YNKNVEWLRY HFWWLYLGFVAFFVTLLRLTVLSK ED G VL VTHVVHN+VFFYLFHWIKGSPDNFSQGEFNGLTLWEQI+DGIPWTKTKKLFFL+HT LVFAASYVTDYD +YLA+N PVY+ LGIIPKIPEMHRVRVFGWNKT GIDDV +D L+     +ATAAG AA  G K
Sbjct:    4 RDSGNGL-YSGMYFDGDRPASLYNKNVEWLRYPHFWWLYLGFVAFFVTLLRLTVLSKPEDLGRVLTVTHVVHNMVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIEDGIPWTKTKKLFFLVHTALVFAASYVTDYDFSYLAINAPVYVFLGIIPKIPEMHRVRVFGWNKTAGIDDVPDDLLSSPSRPTATAAGGAAAAGKK 202          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: CBJ29398.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.4 bits (381), Expect = 3.900e-33
Identity = 81/177 (45.76%), Postives = 108/177 (61.02%), Query Frame = 0
Query:   64 YSEKY---FDGDR-------PAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLT-VLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            Y  KY    DGD           M NKN EW++ ++ W +Y+ F+A    ++ +T + S A+   MV    +VVH ++ FY FHW KGSPD F+QGE+NGLT WEQ+D G+PWTKTKK   ++ TVL      V+DY   YLA+N PV  +L ++ K P MHRVR+   N TTGIDD
Sbjct:    9 YQRKYAVSSDGDHSLHGDISAGGMSNKNTEWMQNSYTWVMYVLFIATIWGVVHMTQIFSVAKSTTMV----NVVHGLITFYFFHWTKGSPDEFTQGEWNGLTFWEQLDAGVPWTKTKKFMMIVPTVLCLIPLVVSDYQPRYLAVNLPVCCIL-LLAKSPLMHRVRILDINATTGIDD 180          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: GAY05743.1 (ORM1-like protein [Pythium insidiosum] >GAX92188.1 ORM1-like protein [Pythium insidiosum])

HSP 1 Score: 136.7 bits (343), Expect = 9.800e-29
Identity = 71/156 (45.51%), Postives = 98/156 (62.82%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNF-SQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNED 234
            NKNV W+    FW  Y+  +A     + L V+  +E W  V    +V+H VV F + HWIKGSPD+  + G++  LT +EQID+G PWT TKK   +I T L  AAS  TDYD  +L +N P+++ L I+ K+PE+ RVR+FG N T GIDDV ++
Sbjct:    8 NKNVNWMDSRGFWTFYVLMIASIYMAMPL-VVPASEAWTYV----NVIHGVVSFSIMHWIKGSPDDTNAMGDYRELTFYEQIDEGRPWTPTKKFLMMIPTALFMAASVATDYDTTHLCVNFPIWVTL-ILAKLPELDRVRIFGINSTVGIDDVKKE 157          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: ETI45488.1 (hypothetical protein F443_09920 [Phytophthora parasitica P1569] >ETK85440.1 hypothetical protein L915_09717 [Phytophthora parasitica] >ETL38884.1 hypothetical protein L916_09621 [Phytophthora parasitica] >ETL91989.1 hypothetical protein L917_09544 [Phytophthora parasitica] >ETM45287.1 hypothetical protein L914_09587 [Phytophthora parasitica] >ETO74147.1 hypothetical protein F444_10015 [Phytophthora parasitica P1976] >ETP15312.1 hypothetical protein F441_09869 [Phytophthora parasitica CJ01A1] >ETP43388.1 hypothetical protein F442_09823 [Phytophthora parasitica P10297] >KUF85903.1 ORM1 protein 2 [Phytophthora nicotianae] >KUF97607.1 Ras-related protein RABH1e [Phytophthora nicotianae])

HSP 1 Score: 132.5 bits (332), Expect = 1.900e-27
Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    FW  Y+  +A     + +   S     G  L   +V+H VV F + HWIKGSPD+ S G++  LT +EQID G PWT TKK   +I T L  AAS  TDYD  +L +N P++  L I+ K+PE  RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLASLYMAMPIAFPSH----GDALTAVNVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPEFDRVRIFGINSTVGIDD 153          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: OWZ23474.1 (Alpha-1-acid glycoprotein 1-like protein [Phytophthora megakarya])

HSP 1 Score: 131.7 bits (330), Expect = 3.200e-27
Identity = 69/155 (44.52%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDDVNED 234
            NKNV W+    FW  Y+  +A     + +   S     G  L    V+H VV F + HWIKGSPD+ S G++  LT +EQID G PWT TKK   +I T L  AAS  TDYD  +L +N P++  L I+ K+PE  RVR+FG N T GIDD  ++
Sbjct:    8 NKNVNWMDSRGFWTFYILLLASLYMAMPIVFPSH----GDALTAVSVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPEFDRVRIFGINSTVGIDDYKKN 157          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_009526436.1 (hypothetical protein PHYSODRAFT_354575 [Phytophthora sojae] >EGZ17378.1 hypothetical protein PHYSODRAFT_354575 [Phytophthora sojae])

HSP 1 Score: 131.3 bits (329), Expect = 4.100e-27
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    FW  Y+  +A     + +   +     G  L   +V+H VV F + HW+KGSPD+ S G++  LT +EQID G PWT TKK   +I T L  AAS  TDYD  +L +N P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLASLYMAMPIIFPTH----GDALTAVNVIHGVVSFGIMHWVKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTRHLLINFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 153          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: XP_002895828.1 (ORM1-like protein [Phytophthora infestans T30-4] >EEY54591.1 ORM1-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 131.0 bits (328), Expect = 5.400e-27
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    FW  Y+  +A     + +   +     G  L   +V+H VV F + HWIKGSPD+ S G++  LT +EQID G PWT TKK   +I T L  AAS  TDYD  +L +N P++  L I+ K+PE+ RVR+FG N T GIDD
Sbjct:    8 NKNVNWMDSRGFWTFYIMLLASLYMAMPIAFPTH----GDALTAVNVIHGVVSFGIMHWIKGSPDDNSMGDYRELTFYEQIDQGHPWTNTKKFLMMIPTFLFLAASVATDYDTLHLLINFPIWATL-ILAKLPELDRVRIFGINSTVGIDD 153          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: CCA15375.1 (ORM1like protein putative [Albugo laibachii Nc14])

HSP 1 Score: 126.7 bits (317), Expect = 1.000e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSP-DNFSQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    FW  Y+  +   +  + +  L  A D   V    +VVH +V F + HWIKGSP D+ S G++  LT +EQID+  PW+ TKK   ++ TV+   AS  TDYD ++L +N P++ +L I+ K+PE HRVR+FG N T GIDD
Sbjct:   46 NKNVNWMETRGFWTFYV--LVIGMLYMAMPFLVPAND---VWTAVNVVHGLVSFGIMHWIKGSPDDSMSMGDYRELTFYEQIDEDHPWSGTKKFLIVVPTVIFMLASVTTDYDTHHLMINFPIWFVL-ILAKLPEFHRVRIFGINSTVGIDD 191          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: CCI49500.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 124.4 bits (311), Expect = 5.100e-25
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 0
Query:   63 SYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNF-SQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            S  EK  +    +   NKNV W+    FW  Y+  +      +   V +  E W  V    +V+H ++ F + HWIKGSPD+  S G++  LT +EQID+  PW+ TKK   ++ T++   AS  TDYD  +L +N P++ +L I+ K+PE HRVR+FG N T GIDD
Sbjct:    9 SSEEKLMEKADISVNINKNVNWMETRGFWTFYVLVIGMSYMAMPFFVPAN-EVWTAV----NVIHGLISFGIMHWIKGSPDDSNSMGDYRELTFYEQIDENHPWSGTKKFLMVVPTMIFMLASVTTDYDTQHLMINFPIWFVL-ILAKLPEFHRVRIFGINSTVGIDD 170          
BLAST of NO02G03060 vs. NCBI_GenBank
Match: CCI49499.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 123.2 bits (308), Expect = 1.100e-24
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 0
Query:   79 NKNVEWLRYAHFWWLYLGFVAFFVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNF-SQGEFNGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVYILLGIIPKIPEMHRVRVFGWNKTTGIDD 230
            NKNV W+    FW  Y+  +      +   V +  E W  V    +V+H ++ F + HWIKGSPD+  S G++  LT +EQID+  PW+ TKK   ++ T++   AS  TDYD  +L +N P++ +L I+ K+PE HRVR+FG N T GIDD
Sbjct:   11 NKNVNWMETRGFWTFYVLVIGMSYMAMPFFVPAN-EVWTAV----NVIHGLISFGIMHWIKGSPDDSNSMGDYRELTFYEQIDENHPWSGTKKFLMVVPTMIFMLASVTTDYDTQHLMINFPIWFVL-ILAKLPEFHRVRIFGINSTVGIDD 156          
The following BLAST results are available for this feature:
BLAST of NO02G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30225.16.500e-8981.00ormdl family protein [Nannochloropsis gaditana][more]
CBJ29398.13.900e-3345.76conserved unknown protein [Ectocarpus siliculosus][more]
GAY05743.19.800e-2945.51ORM1-like protein [Pythium insidiosum] >GAX92188.1... [more]
ETI45488.11.900e-2745.70hypothetical protein F443_09920 [Phytophthora para... [more]
OWZ23474.13.200e-2744.52Alpha-1-acid glycoprotein 1-like protein [Phytopht... [more]
XP_009526436.14.100e-2744.37hypothetical protein PHYSODRAFT_354575 [Phytophtho... [more]
XP_002895828.15.400e-2745.03ORM1-like protein [Phytophthora infestans T30-4] >... [more]
CCA15375.11.000e-2543.42ORM1like protein putative [Albugo laibachii Nc14][more]
CCI49500.15.100e-2539.29unnamed protein product [Albugo candida][more]
CCI49499.11.100e-2441.45unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006954NSK006954Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03060.1NO02G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574550gene_895Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g180gene306Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03060.1NO02G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03060 ID=NO02G03060|Name=NO02G03060|organism=Nannochloropsis oceanica|type=gene|length=1331bp
ATGACCCACCACTTCGCACATGTTCCCTTTCAAACGTTCCCCACCCAATC
CTCAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGC
GAGCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATC
ATCATgtaagtgcgccgtggacggagacggatagagacttcgtgcggtag
catgataggacgacaggtgtagggtgctcatgaagatttctgaatcgtga
tcgcggcgcgattgtgatgcggccttatttgcgggttttcttacgaacgc
acccacttcaattttggagtgctcgtgctccgagaggggtgcaaggaaag
cccggggcttccccccctatctatggacatgttttgggcgtcgctaacac
tcgttttatggcttgctcatcatgagttgtgatgctgtccctcatttgcg
gagaccagcaggagagggaggcctttattccgtcctgccccccatgggca
attctcgtatctttttacaagggaccatactaactacatcctttccttcc
tccgttttttactggcccctatacacagGGGGATGCACCGGGACGGCGGG
CACGGGACGTCCTACTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGC
CATGTACAATAAGAATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGT
TGTATCTGGGGTTTGTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTC
TTGAGCAAGGCTGAGGATTGGGGAATGGTTTTGATGGTGACTCATGTGGT
GCACAACGTGgtgagtgggcgagaaagaaatgggaagaaggcggaaaaac
ggagacgagaccagaagttggattgcaaaaagaaaagccgacggtaactc
aaatccgtcgagcttaccagtcatcgaatcacctcataaccccacgagca
cagGTATTCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGACAATTT
TAGTCAAGGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGACGACG
GCATCCCCTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATACTGTC
TTGGTGTTTGCTGCCTCCTACGTGACTGATTACGACTTGAATTATCTGGC
GATGAATGGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGATCCCGG
AGATGCACCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGATCGAT
GACGTTAATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGC
CGCCACGTTAGGCACCAAGAAGAGTCGGTGA
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protein sequence of NO02G03060.1

>NO02G03060.1-protein ID=NO02G03060.1-protein|Name=NO02G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MTHHFAHVPFQTFPTQSSAHTATRQSQHGDLGARATLISPLCFLARDYTI
IMGMHRDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAF
FVTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEF
NGLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPV
YILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAYSATAAGSAATLGT
KKSR*
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Synonyms
Publications