NO02G02930, NO02G02930 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02930
Unique Name	NO02G02930
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1563
Alignment location	chr2:788719..790281 -

Link to JBrowse

Properties


Property Name	Value
Description	Pre-mrna-splicing factor

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:788719..790281 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR001680	WD40_repeat
IPR020472	G-protein_beta_WD-40_rep

Homology

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BLAST of NO02G02930 vs. NCBI_GenBank
Match: XP_020889139.1 (protein pleiotropic regulator PRL2 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 112.1 bits (279), Expect = 5.300e-21
Identity = 195/335 (58.21%), Postives = 219/335 (65.37%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      + +HPKE +FVS                                                          FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCEADK+IK+WKED  AT ETHP++ +  K+
Sbjct:  148 PSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTVRAMALHPKENAFVSASADNIKKFSLPKGEFCHNMLSLQRDTINAVAANEDGVMATGGDKGGLWFWDWKSGHNFQQAETIVQPGSLESEAGIYAACYDRTGSRLVTCEADKTIKMWKEDENATPETHPLNFKPPKE 475

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: BAB02756.1 (PP1/PP2A phosphatases pleiotropic regulator PRL2 [Arabidopsis thaliana])

HSP 1 Score: 111.3 bits (277), Expect = 9.100e-21
Identity = 190/334 (56.89%), Postives = 214/334 (64.07%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + +HPKE  FVS                                                         FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCE DK+IK+WKED +AT ETHP++ +  K+
Sbjct:  148 PSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITNHKKTVRAMALHPKENDFVS--ASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKE 472

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: AAL06842.1 (AT3g16650/MGL6_10 [Arabidopsis thaliana])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 190/335 (56.72%), Postives = 214/335 (63.88%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + +HPKE  FVS                                                          FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCE DK+IK+WKED +AT ETHP++ +  K+
Sbjct:  146 PSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKE 473

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: NP_566557.1 (Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana] >Q39190.2 RecName: Full=Protein pleiotropic regulator PRL2 >CAA58033.1 PRL2, partial [Arabidopsis thaliana] >AAV85733.1 At3g16650 [Arabidopsis thaliana] >AEE75848.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 190/335 (56.72%), Postives = 214/335 (63.88%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + +HPKE  FVS                                                          FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCE DK+IK+WKED +AT ETHP++ +  K+
Sbjct:  148 PSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKE 475

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: XP_009842862.1 (hypothetical protein H257_16204 [Aphanomyces astaci] >ETV67605.1 hypothetical protein H257_16204 [Aphanomyces astaci])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 227/341 (66.57%), Postives = 243/341 (71.26%), Query Frame = 0

Query:  180 AKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQECLAHKRW 521
            A+VP PTWHAPWKL  V+AGHLGWVR++A DP N+WFVTGSADRTIKVWDL      A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXX                                                 F + ETIVQPGSLD EAGIYAS FDM+G R +T EADK+IK+W+E+ +AT ETHP+DM  W +E  A KR+
Sbjct:  166 AEVPKPTWHAPWKLKRVIAGHLGWVRSIAVDPTNQWFVTGSADRTIKVWDL------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQLKDGKFLRNFSGHNAIVNAVSVNQDNVLVSSADNGSMRFWDYSTGYCFHQEETIVQPGSLDSEAGIYASTFDMTGLRLITAEADKTIKVWEENPDATPETHPIDMVKWTKEFTAPKRY 500

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: XP_008862117.1 (hypothetical protein H310_00925 [Aphanomyces invadans] >ETW08312.1 hypothetical protein H310_00925 [Aphanomyces invadans])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 226/341 (66.28%), Postives = 244/341 (71.55%), Query Frame = 0

Query:  180 AKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQECLAHKRW 521
            A+VP PTWHAPWKL  V+AGHLGWVR++A DP N+WFVTGSADRTIKVWDL      A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXX                                                 F + ETIVQPGSLD EAG++AS FDM+G RF+T EADK+IK+W+E+ +AT ETHP+DM  W +E  A KR+
Sbjct:  160 AEVPKPTWHAPWKLKRVIAGHLGWVRSIAVDPTNQWFVTGSADRTIKVWDL------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQHKDGKFLRNFSGHNAIVNAVSVNQDNVLVSSADNGSMRFWDYTTGYCFHEEETIVQPGSLDSEAGVFASTFDMTGLRFITTEADKTIKVWEENPDATPETHPIDMVKWTKEFTAPKRY 494

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: pir||S49821 (PRL2 protein - Arabidopsis thaliana (fragment))

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 190/335 (56.72%), Postives = 214/335 (63.88%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + +HPKE  FVS                                                          FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCE DK+IK+WKED +AT ETHP++ +  K+
Sbjct:  100 PSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKE 427

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: XP_014357049.1 (PREDICTED: LOW QUALITY PROTEIN: pleiotropic regulator 1 [Papilio machaon])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 139/344 (40.41%), Postives = 160/344 (46.51%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLA--KCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQECLAHKRW 521
            P  VP P WHAPWKL  V++GHLGWVR VA +P NEWF TG+ADR IK+WDLA  K      G                X                      X  KVIRHY                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +F S                                                         FQ+L+  VQPGS+D EAGI++  FD SG+R +T EADK+IKI+KED  A+EETHPV+   W+ E L  +++
Sbjct:  126 PPTVPKPKWHAPWKLFRVISGHLGWVRCVAVEPGNEWFATGAADRVIKIWDLATGKLKVSLTGHVSTVRGGVIAHFGKNXFIVSFAQSFGFLVNNNIYDMKMXHMKVIRHYHGHLSAVYALGLHPTIDVLVSAGRDATARVWDVRTKANVHTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTFASASPDNIKQWKCPEGKFIQNLSGHNAIVNCMAVNSEGVLVSGGDNGTMFLWDWRTGYNFQRLQAPVQPGSMDSEAGIFSMTFDQSGSRLITTEADKTIKIYKEDDTASEETHPVN---WRPEILKRRKF 466

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: OAP03391.1 (PRL2 [Arabidopsis thaliana])

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20
Identity = 190/335 (56.72%), Postives = 214/335 (63.88%), Query Frame = 0

Query:  179 PAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQ 513
            P++ P P WHAPWK + V+ GHLGWVR+VAFDP+NEWF TGSADRTIK+WD+A        G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + +HPKE  FVS                                                          FQ+ ETIVQPGSL+ EAGIYA+ +D +G+R +TCE DK+IK+WKED +AT ETHP++ +  K+
Sbjct:  148 PSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT-------GVLKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMQIFVLPHDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKE 475

[Close]

BLAST of NO02G02930 vs. NCBI_GenBank
Match: XP_008604493.1 (hypothetical protein SDRG_00779 [Saprolegnia diclina VS20] >EQC41924.1 hypothetical protein SDRG_00779 [Saprolegnia diclina VS20])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 229/340 (67.35%), Postives = 241/340 (70.88%), Query Frame = 0

Query:  181 KVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKVIRHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKVHPKELSFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQECLAHKRW 521
            +VP P WHAPWKL  V+AGHLGWVR+VA DP NEWFVTGSADRTIKVWDL      A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXX                                                 FQK  TIVQPGSLD EAGIYA+ FD +G R +T EADK+IKIW+EDA AT E+HP+DM GW +E  A KR+
Sbjct:  158 EVPKPQWHAPWKLKRVIAGHLGWVRSVAVDPTNEWFVTGSADRTIKVWDL------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQTRDGKFLRNLSGHNAIINAVCMNQDNVAVSAADNGTMRFWDYTTGYNFQKEATIVQPGSLDSEAGIYAATFDKTGLRLITAEADKTIKIWQEDATATPESHPIDMSGWTKEFTAPKRF 491

The following BLAST results are available for this feature:

BLAST of NO02G02930 vs. NCBI_GenBank

BLAST of NO02G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_020889139.1	5.300e-21	58.21	protein pleiotropic regulator PRL2 [Arabidopsis ly...	[more]
BAB02756.1	9.100e-21	56.89	PP1/PP2A phosphatases pleiotropic regulator PRL2 [...	[more]
AAL06842.1	1.200e-20	56.72	AT3g16650/MGL6_10 [Arabidopsis thaliana]	[more]
NP_566557.1	1.200e-20	56.72	Transducin/WD40 repeat-like superfamily protein [A...	[more]
XP_009842862.1	1.200e-20	66.57	hypothetical protein H257_16204 [Aphanomyces astac...	[more]
XP_008862117.1	1.200e-20	66.28	hypothetical protein H310_00925 [Aphanomyces invad...	[more]
pir\|\|S49821	1.200e-20	56.72	PRL2 protein - Arabidopsis thaliana (fragment)	[more]
XP_014357049.1	1.200e-20	40.41	PREDICTED: LOW QUALITY PROTEIN: pleiotropic regula...	[more]
OAP03391.1	1.200e-20	56.72	PRL2 [Arabidopsis thaliana]	[more]
XP_008604493.1	1.500e-20	67.35	hypothetical protein SDRG_00779 [Saprolegnia dicli...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006939	NSK006939	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G02930.1	NO02G02930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574503	gene_880	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100026g10	gene294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G02930.1	NO02G02930.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G02930 ID=NO02G02930|Name=NO02G02930|organism=Nannochloropsis oceanica|type=gene|length=1563bp
ATGTCGTCTTCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATG
CGACCTGTACAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGC
CCACGCAAAAGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTT
CCTCGCGCGTCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGA
GGCCTCATCCGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGG
CGGCGGCGGGCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAAC
ATCCTCAATTCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTA
CCGAGGCAGCAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCG
CATACAAAGGCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACT
GCCGCCGAAGCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGG
TACGGCGTCGACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGA
CGCCTACTTGGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCAT
TTGGGATGGGTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGT
CACGGGCTCGGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCG
CGGCAGGGGCGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCT
GCCGTAAGGGCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGC
CGCAGAGGATAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGA
TTCGTCACTATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCAC
CCCACCCTTGATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGT
GTGGGATATGCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGA
ATACGGTAGGGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACG
GGGTCGTATGATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAG
TATGGCGACCTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGC
ACCCGAAGGAGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAG
TGGCAAGTGAGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGC
GGTGATCAACTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTG
GGGACAATGGAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTC
CAGAAATTGGAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGG
GATATATGCGTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTG
AAGCGGACAAGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAG
GAGACGCACCCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCA
TAAGCGATGGTAG

protein sequence of NO02G02930.1

>NO02G02930.1-protein ID=NO02G02930.1-protein|Name=NO02G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSSSLADMILGNRKRTCDLYSAETASSALSPFLPTQKLKVAIKVNQEYNV
PRASATAPPLPIQHEGEASSATSVDGGPLGAAAAAAGVGKSKKDATDTLN
ILNSLRHEEEERELQHYRGSNGGSRAASGGSLVAYKGSSTSGTMVTSTRT
AAEAPPGAAAAAAAGIGTASTALALKRAPAKVPTPTWHAPWKLHSVVAGH
LGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHIS
AVRALAVSNRHPYLFSAAEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALH
PTLDILVTGGRDSVARVWDMRTKMQVHVLGGHTNTVGVVATNSVDPQVIT
GSYDSTIKLWDIIAGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKK
WQVRDGKFLKNLSGHNAVINSLAVNEDNVLVSCGDNGSLRFWDYQTGYCF
QKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATE
ETHPVDMEGWKQECLAHKRW*

Synonyms

Publications