NO02G02930.1, NO02G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02930.1
Unique NameNO02G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr2:788719..790281 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:788719..790281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02930.1 vs.
Match: EWM30365.1 (pre-mrna-splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 866.3 bits (2237), Expect = 4.800e-248
Identity = 432/521 (82.92%), Postives = 465/521 (89.25%), Query Frame = 0 
Query:    1 MSSSLADMILGNRKRTCDLYSAETASSALSPFLPTQKLKVAIKVNQEYNVPRASATAPPLPIQHEGEASSATSVDGGPLGAAAAAAGVGKSKKDATDTLNILNSLRHEEEERELQHYRGSNGGSRAASGGSLVAYKGSSTSGTMVT-STRTAAEAPPGAAAAAAAGIGTASTALALKRAPAKVPTPTWHAPWKLHSVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHISAVRALAVSNRHPYLFSAAEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALHPTLDILVTGGRDSVARVWDMRTKMQVHVLGGHTNTVGVVATNSVDPQVITGSYDSTIKLWDIIAGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKKWQVRDGKFLKNLSGHNAVINSLAVNEDNVLVSCGDNGSLRFWDYQTGYCFQKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATEETHPVDMEGWKQECLAHKRW 521
            M++SLADMILGNRKRTCDLY+AE  S    PFLP QKLKVA+KV+QEY +P +S T      + E EA+SA   +       +  AG GK+K +ATDTLNILNSLR+EE EREL+ YRG  GGSRAAS G+LVAYKG+   G MV+ S +     PPGAAAAAAAGIG  S+ALAL R PAKVPTPTWHAPWKLH+VVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHISAVRALAVSNRHPYLFS AEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALHPTLD+LVTGGRDSVARVWDMRTKMQVHVLGGHTNTVG +ATNSVDPQ+ITGSYDSTIKLWDI+AGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKKWQVRDGKFLKNLSGHNAVIN+LA+NEDNVLVSCGDNGSLRFWDYQTGYCFQ+LETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADK++KIWKEDAEA+ ETHP+DME WKQECL+HKRW
Sbjct:   25 MTTSLADMILGNRKRTCDLYTAEMTSGTTPPFLPAQKLKVAVKVDQEYKIPCSSPTVHTSSTKQESEATSAPGNEETRHRGPSVLAGQGKAKGEATDTLNILNSLRNEEAERELRQYRGKYGGSRAASRGALVAYKGNDAGGAMVSRSNKRDGRTPPGAAAAAAAGIGN-SSALALHRTPAKVPTPTWHAPWKLHAVVAGHLGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHISAVRALAVSNRHPYLFSVAEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALHPTLDVLVTGGRDSVARVWDMRTKMQVHVLGGHTNTVGALATNSVDPQIITGSYDSTIKLWDIVAGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKKWQVRDGKFLKNLSGHNAVINTLAINEDNVLVSCGDNGSLRFWDYQTGYCFQRLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKTVKIWKEDAEASPETHPIDMEAWKQECLSHKRW 544
The following BLAST results are available for this feature:
BLAST of NO02G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30365.14.800e-24882.92pre-mrna-splicing factor [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02930NO02G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02930.1NO02G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02930.1.cds1NO02G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02930.1 ID=NO02G02930.1|Name=NO02G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ATGTCGTCTTCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATG
CGACCTGTACAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGC
CCACGCAAAAGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTT
CCTCGCGCGTCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGA
GGCCTCATCCGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGG
CGGCGGCGGGCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAAC
ATCCTCAATTCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTA
CCGAGGCAGCAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCG
CATACAAAGGCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACT
GCCGCCGAAGCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGG
TACGGCGTCGACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGA
CGCCTACTTGGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCAT
TTGGGATGGGTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGT
CACGGGCTCGGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCG
CGGCAGGGGCGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCT
GCCGTAAGGGCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGC
CGCAGAGGATAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGA
TTCGTCACTATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCAC
CCCACCCTTGATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGT
GTGGGATATGCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGA
ATACGGTAGGGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACG
GGGTCGTATGATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAG
TATGGCGACCTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGC
ACCCGAAGGAGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAG
TGGCAAGTGAGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGC
GGTGATCAACTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTG
GGGACAATGGAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTC
CAGAAATTGGAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGG
GATATATGCGTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTG
AAGCGGACAAGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAG
GAGACGCACCCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCA
TAAGCGATGGTAG
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protein sequence of NO02G02930.1

>NO02G02930.1-protein ID=NO02G02930.1-protein|Name=NO02G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSSSLADMILGNRKRTCDLYSAETASSALSPFLPTQKLKVAIKVNQEYNV
PRASATAPPLPIQHEGEASSATSVDGGPLGAAAAAAGVGKSKKDATDTLN
ILNSLRHEEEERELQHYRGSNGGSRAASGGSLVAYKGSSTSGTMVTSTRT
AAEAPPGAAAAAAAGIGTASTALALKRAPAKVPTPTWHAPWKLHSVVAGH
LGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHIS
AVRALAVSNRHPYLFSAAEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALH
PTLDILVTGGRDSVARVWDMRTKMQVHVLGGHTNTVGVVATNSVDPQVIT
GSYDSTIKLWDIIAGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKK
WQVRDGKFLKNLSGHNAVINSLAVNEDNVLVSCGDNGSLRFWDYQTGYCF
QKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATE
ETHPVDMEGWKQECLAHKRW*
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mRNA from alignment at chr2:788719..790281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02930.1 ID=NO02G02930.1|Name=NO02G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr2:788719..790281- (Nannochloropsis oceanica)
ATGTCGTCTTCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATG
CGACCTGTACAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGC
CCACGCAAAAGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTT
CCTCGCGCGTCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGA
GGCCTCATCCGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGG
CGGCGGCGGGCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAAC
ATCCTCAATTCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTA
CCGAGGCAGCAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCG
CATACAAAGGCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACT
GCCGCCGAAGCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGG
TACGGCGTCGACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGA
CGCCTACTTGGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCAT
TTGGGATGGGTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGT
CACGGGCTCGGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCG
CGGCAGGGGCGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCT
GCCGTAAGGGCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGC
CGCAGAGGATAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGA
TTCGTCACTATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCAC
CCCACCCTTGATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGT
GTGGGATATGCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGA
ATACGGTAGGGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACG
GGGTCGTATGATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAG
TATGGCGACCTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGC
ACCCGAAGGAGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAG
TGGCAAGTGAGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGC
GGTGATCAACTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTG
GGGACAATGGAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTC
CAGAAATTGGAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGG
GATATATGCGTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTG
AAGCGGACAAGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAG
GAGACGCACCCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCA
TAAGCGATGGTAG
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Coding sequence (CDS) from alignment at chr2:788719..790281-

>NO02G02930.1 ID=NO02G02930.1|Name=NO02G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr2:788719..790281- (Nannochloropsis oceanica)
ATGTCGTCTTCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATG
CGACCTGTACAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGC
CCACGCAAAAGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTT
CCTCGCGCGTCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGA
GGCCTCATCCGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGG
CGGCGGCGGGCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAAC
ATCCTCAATTCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTA
CCGAGGCAGCAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCG
CATACAAAGGCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACT
GCCGCCGAAGCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGG
TACGGCGTCGACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGA
CGCCTACTTGGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCAT
TTGGGATGGGTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGT
CACGGGCTCGGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCG
CGGCAGGGGCGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCT
GCCGTAAGGGCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGC
CGCAGAGGATAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGA
TTCGTCACTATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCAC
CCCACCCTTGATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGT
GTGGGATATGCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGA
ATACGGTAGGGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACG
GGGTCGTATGATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAG
TATGGCGACCTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGC
ACCCGAAGGAGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAG
TGGCAAGTGAGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGC
GGTGATCAACTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTG
GGGACAATGGAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTC
CAGAAATTGGAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGG
GATATATGCGTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTG
AAGCGGACAAGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAG
GAGACGCACCCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCA
TAAGCGATGGTAG
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Synonyms
Publications