NO02G02670, NO02G02670 (gene) Nannochloropsis oceanica

Overview
NameNO02G02670
Unique NameNO02G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr2:736129..737142 +

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Properties
Property NameValue
DescriptionChaperone protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:736129..737142 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OPX20734.1 (molecular chaperone DnaJ [Desulfobacca sp. 4484_104])

HSP 1 Score: 77.0 bits (188), Expect = 8.100e-11
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY-LEGRRFAG 83
            KDYY ILGVPR++  E IK +YRQLA+  HPDR   GD  + ERFK  SEAY VL D  +RR+ D Y  EG R  G
Sbjct:    6 KDYYQILGVPRDAKAEDIKKKYRQLALKYHPDR-NPGDKEAEERFKEASEAYEVLRDPQKRRLYDQYGHEGLRDTG 80          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: GBE52129.1 (chaperone protein DnaJ [bacterium BMS3Bbin14] >GBE11879.1 chaperone protein DnaJ [bacterium BMS3Abin13])

HSP 1 Score: 77.0 bits (188), Expect = 8.100e-11
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    7 TKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY 75
            ++DYY I+GVPR++S EAIK  YR+LAM  HPD+   GD  S ERFK  +EAY VL DS +R+I D Y
Sbjct:    2 SRDYYEIIGVPRDASAEAIKKSYRKLAMQHHPDK-NPGDAKSEERFKEAAEAYEVLSDSRKRQIYDVY 68          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_013707288.1 (molecular chaperone DnaJ [Desulfobacca acetoxidans] >AEB10179.1 Chaperone protein dnaJ [Desulfobacca acetoxidans DSM 11109])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 0
Query:    4 PTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY----LEGRRFAGARLRGD 89
            P+  KDYY ILGV R++++  IK  YRQLA+  HPDR   GD A+ E+FK  SEAY VL D  +RR+ D Y    L    F G R  GD
Sbjct:    2 PSYNKDYYQILGVSRDATEAEIKKSYRQLALKYHPDR-NPGDKAAEEKFKEASEAYEVLHDPAKRRLYDQYGHEGLRDSGFTGFRDFGD 89          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: BAJ47059.1 (molecular chaperone DnaJ [Candidatus Caldiarchaeum subterraneum] >BAJ49881.1 molecular chaperone DnaJ [Candidatus Caldiarchaeum subterraneum])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    4 PTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY 75
            P+  KDYY ILGVPRN++ E IK  YR+LA+  HPDR  + +  + E+FK ISEAY VL+D  +RR+ D Y
Sbjct:    2 PSNDKDYYEILGVPRNATKEEIKRAYRRLALQYHPDRNKSPE--AEEKFKEISEAYAVLMDDEKRRLYDMY 70          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: BAJ48984.1 (molecular chaperone DnaJ [Candidatus Caldiarchaeum subterraneum])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    4 PTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY 75
            P+  KDYY ILGVPRN++ E IK  YR+LA+  HPDR  + +  + E+FK ISEAY VL+D  +RR+ D Y
Sbjct:    2 PSNDKDYYEILGVPRNATKEEIKRAYRRLALQYHPDRNKSPE--AEEKFKEISEAYAVLMDDEKRRLYDMY 70          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_022852555.1 (molecular chaperone DnaJ [Thermodesulfatator atlanticus])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 46/86 (53.49%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY ILGV RN+S E IK  YR+LA   HPD    GD  + ERFK ISEAY VL D  +R I D     R   G   RG EGF D
Sbjct:    4 KDYYQILGVSRNASQEEIKKAYRRLARKYHPD-LHQGDKEAEERFKQISEAYEVLSDPEKRAIYD----ARGHRGLHERGYEGFSD 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OLC47268.1 (molecular chaperone DnaJ [Gemmatimonadetes bacterium 13_1_40CM_4_69_5])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    9 DYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGF 92
            DYY++LGVPR +S+  IK  YR+LAM+ HPDR   GD A+ E+FK I+EAY VL D  +R   D Y E    AG R  G  GF
Sbjct:    8 DYYALLGVPREASEADIKKAYRRLAMEYHPDR-NGGDKAAEEKFKQITEAYEVLRDPDKRAAYDRYGE----AGLRGGGASGF 85          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OLC97443.1 (molecular chaperone DnaJ, partial [Gemmatimonadetes bacterium 13_1_40CM_3_70_6])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    9 DYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGF 92
            DYY++LGVPR +S+  IK  YR+LAM+ HPDR   GD A+ E+FK I+EAY VL D  +R   D Y E    AG R  G  GF
Sbjct:    8 DYYALLGVPREASEADIKKAYRRLAMEYHPDR-NGGDKAAEEKFKQITEAYEVLRDPDKRAAYDRYGE----AGLRGGGASGF 85          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OLD42892.1 (molecular chaperone DnaJ [Gemmatimonadetes bacterium 13_1_40CM_2_70_7])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    9 DYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGF 92
            DYY++LGVPR +S+  IK  YR+LAM+ HPDR   GD A+ E+FK I+EAY VL D  +R   D Y E    AG R  G  GF
Sbjct:    8 DYYALLGVPREASEADIKKAYRRLAMEYHPDR-NGGDKAAEEKFKQITEAYEVLRDPDKRAAYDRYGE----AGLRGGGASGF 85          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OLE60365.1 (molecular chaperone DnaJ [Gemmatimonadetes bacterium 13_1_20CM_2_70_10])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    9 DYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGF 92
            DYY++LGVPR +S+  IK  YR+LAM+ HPDR   GD A+ E+FK I+EAY VL D  +R   D Y E    AG R  G  GF
Sbjct:    8 DYYALLGVPREASEADIKKAYRRLAMEYHPDR-NGGDKAAEEKFKQITEAYEVLRDPDKRAAYDRYGE----AGLRGGGASGF 85          
The following BLAST results are available for this feature:
BLAST of NO02G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OPX20734.18.100e-1156.58molecular chaperone DnaJ [Desulfobacca sp. 4484_10... [more]
GBE52129.18.100e-1157.35chaperone protein DnaJ [bacterium BMS3Bbin14] >GBE... [more]
WP_013707288.11.100e-1049.44molecular chaperone DnaJ [Desulfobacca acetoxidans... [more]
BAJ47059.11.400e-1053.52molecular chaperone DnaJ [Candidatus Caldiarchaeum... [more]
BAJ48984.11.400e-1053.52molecular chaperone DnaJ [Candidatus Caldiarchaeum... [more]
WP_022852555.11.400e-1053.49molecular chaperone DnaJ [Thermodesulfatator atlan... [more]
OLC47268.11.400e-1051.81molecular chaperone DnaJ [Gemmatimonadetes bacteri... [more]
OLC97443.11.400e-1051.81molecular chaperone DnaJ, partial [Gemmatimonadete... [more]
OLD42892.11.400e-1051.81molecular chaperone DnaJ [Gemmatimonadetes bacteri... [more]
OLE60365.11.400e-1051.81molecular chaperone DnaJ [Gemmatimonadetes bacteri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02670.1NO02G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574387gene_856Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02670.1NO02G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02670 ID=NO02G02670|Name=NO02G02670|organism=Nannochloropsis oceanica|type=gene|length=1014bp
GTGCGTGTTGTGCTTTGTCCTGTGCGAGGGCCCCATTCGCACTGACTCTC
TGTGTCGTTTCTCTCCCATGACCATACATACATGGGGTAACTGTCCTGGA
CAGGAAAAATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTT
GGCGTTCCTCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACA
GCTCGCCATGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCT
CCGTGGAGCGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGAC
AGTGGGCAGCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGC
CGGGGCCCGCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGG
TGCGACGGCCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCA
TCCAAGGCGTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGT
GATGGGATTGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCG
ATGAAAATTTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAAC
CAAAGgtaggcgatttgtgttgggtcaaaagaactaatgtaccgcgttga
tcttgtcgttgcagcctaaattcatccctttttgtcacaaatcctctcct
cctttttctcgaacacagAACAAAACGTTGGGAGACGCCCGCGCCGTGGG
ACCCCGCCTATCGAGCAGCAGAAACTAAGCATCACGCCAGGGTATCCAAG
TACCATGTGTTTGAGTCCACGCCTCCAGGTCCGGGAGGAGAAAATGCAGG
GGGAGGAGGACGGGATGGAGGAAGCTCCGAGGGAAAAGGTTAGTGTGTAT
ATCTGAAGGGGAGGAGGATGTAAATGGTCATTTGAATAGGAAAGCCAGAG
AATGAGTAGAAAGCGAAGAAGAAAATAAGGGAGTGTACTCATGTGACCAC
TCTCCATTTGAACG
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protein sequence of NO02G02670.1

>NO02G02670.1-protein ID=NO02G02670.1-protein|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVE
RFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRR
PKPPPGSRRGGGASSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDEN
FDHTEGMLVPAWYNQRTKRWETPAPWDPAYRAAETKHHARVSKYHVFEST
PPGPGGENAGGGGRDGGSSEGKG*
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Synonyms
Publications