NO02G02670.1, NO02G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02670.1
Unique NameNO02G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length901
Alignment locationchr2:736129..737142 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:736129..737142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02670.1 vs.
Match: EWM30411.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 342.8 bits (878), Expect = 7.900e-91
Identity = 164/213 (77.00%), Postives = 187/213 (87.79%), Query Frame = 0
Query:    1 MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRRPKPPPGSRRGGGASSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDENFDHTEGMLVPAWYNQRTKRWETPAPWDPAYRAAETKHHARVSKYHVFESTPPGPGGENAGGGG 214
            MDSP P KDYYS+LGVPR+SSDEAIKARYRQLAMDLHPDRCAAGD +SVERFKA+SEAY+VL DSGQRRILD+YLEGRRFAGARLRGDEGF DRLAG+RRP+PPPGSR+GG +SS+AF  +EIALSPRVLVMG+G+ FM+YIA GPR++   H+  +LVPAWYNQRTKRWETPAPW+P YRAA ++HHA+VSKYHVFES P  P     GG G
Sbjct:    1 MDSPPPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRPPPGSRKGGFSSSRAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDR-GHSNDLLVPAWYNQRTKRWETPAPWNPDYRAAGSEHHAKVSKYHVFESAP--PASRRMGGAG 210          
The following BLAST results are available for this feature:
BLAST of NO02G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30411.17.900e-9177.00chaperone protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02670NO02G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02670.1NO02G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02670.1.cds1NO02G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02670.1.cds2NO02G02670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02670.1 ID=NO02G02670.1|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
GTGCGTGTTGTGCTTTGTCCTGTGCGAGGGCCCCATTCGCACTGACTCTC
TGTGTCGTTTCTCTCCCATGACCATACATACATGGGGTAACTGTCCTGGA
CAGGAAAAATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTT
GGCGTTCCTCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACA
GCTCGCCATGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCT
CCGTGGAGCGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGAC
AGTGGGCAGCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGC
CGGGGCCCGCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGG
TGCGACGGCCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCA
TCCAAGGCGTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGT
GATGGGATTGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCG
ATGAAAATTTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAAC
CAAAGAACAAAACGTTGGGAGACGCCCGCGCCGTGGGACCCCGCCTATCG
AGCAGCAGAAACTAAGCATCACGCCAGGGTATCCAAGTACCATGTGTTTG
AGTCCACGCCTCCAGGTCCGGGAGGAGAAAATGCAGGGGGAGGAGGACGG
GATGGAGGAAGCTCCGAGGGAAAAGGTTAGTGTGTATATCTGAAGGGGAG
GAGGATGTAAATGGTCATTTGAATAGGAAAGCCAGAGAATGAGTAGAAAG
CGAAGAAGAAAATAAGGGAGTGTACTCATGTGACCACTCTCCATTTGAAC
G
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protein sequence of NO02G02670.1

>NO02G02670.1-protein ID=NO02G02670.1-protein|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVE
RFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRR
PKPPPGSRRGGGASSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDEN
FDHTEGMLVPAWYNQRTKRWETPAPWDPAYRAAETKHHARVSKYHVFEST
PPGPGGENAGGGGRDGGSSEGKG*
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mRNA from alignment at chr2:736129..737142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02670.1 ID=NO02G02670.1|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at chr2:736129..737142+ (Nannochloropsis oceanica)
GTGCGTGTTGTGCTTTGTCCTGTGCGAGGGCCCCATTCGCACTGACTCTC TGTGTCGTTTCTCTCCCATGACCATACATACATGGGGTAACTGTCCTGGA CAGGAAAAATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTT GGCGTTCCTCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACA GCTCGCCATGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCT CCGTGGAGCGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGAC AGTGGGCAGCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGC CGGGGCCCGCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGG TGCGACGGCCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCA TCCAAGGCGTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGT GATGGGATTGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCG ATGAAAATTTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAAC CAAAGGTAGGCGATTTGTGTTGGGTCAAAAGAACTAATGTACCGCGTTGA TCTTGTCGTTGCAGCCTAAATTCATCCCTTTTTGTCACAAATCCTCTCCT CCTTTTTCTCGAACACAGAACAAAACGTTGGGAGACGCCCGCGCCGTGGG ACCCCGCCTATCGAGCAGCAGAAACTAAGCATCACGCCAGGGTATCCAAG TACCATGTGTTTGAGTCCACGCCTCCAGGTCCGGGAGGAGAAAATGCAGG GGGAGGAGGACGGGATGGAGGAAGCTCCGAGGGAAAAGGTTAGTGTGTAT ATCTGAAGGGGAGGAGGATGTAAATGGTCATTTGAATAGGAAAGCCAGAG AATGAGTAGAAAGCGAAGAAGAAAATAAGGGAGTGTACTCATGTGACCAC TCTCCATTTGAACG
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Coding sequence (CDS) from alignment at chr2:736129..737142+

>NO02G02670.1 ID=NO02G02670.1|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr2:736129..737142+ (Nannochloropsis oceanica)
ATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTTGGCGTTCC
TCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACAGCTCGCCA
TGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCTCCGTGGAG
CGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGACAGTGGGCA
GCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGCCGGGGCCC
GCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGGTGCGACGG
CCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCATCCAAGGC
GTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGTGATGGGAT
TGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCGATGAAAAT
TTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAACCAAAGAAC
AAAACGTTGGGAGACGCCCGCGCCGTGGGACCCCGCCTATCGAGCAGCAG
AAACTAAGCATCACGCCAGGGTATCCAAGTACCATGTGTTTGAGTCCACG
CCTCCAGGTCCGGGAGGAGAAAATGCAGGGGGAGGAGGACGGGATGGAGG
AAGCTCCGAGGGAAAAGGTTAG
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Synonyms
Publications