NO02G02670, NO02G02670 (gene) Nannochloropsis oceanica

Overview
NameNO02G02670
Unique NameNO02G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr2:736129..737142 +

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Properties
Property NameValue
DescriptionChaperone protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:736129..737142 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
BLAST of NO02G02670 vs. NCBI_GenBank
Match: EWM30411.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 321.6 bits (823), Expect = 1.900e-84
Identity = 156/213 (73.24%), Postives = 177/213 (83.10%), Query Frame = 0
Query:    1 MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRRPKPXXXXXXXXXXXSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDENFDHTEGMLVPAWYNQRTKRWETPAPWDPAYRAAETKHHARVSKYHVFESTPPGPGGENAGGGG 214
            MDSP P KDYYS+LGVPR+SSDEAIKARYRQLAMDLHPDRCAAGD +SVERFKA+SEAY+VL DSGQRRILD+YLEGRRFAGARLRGDEGF DRLAG+RRP+P           S+AF  +EIALSPRVLVMG+G+ FM+YIA GPR++   H+  +LVPAWYNQRTKRWETPAPW+P YRAA ++HHA+VSKYHVFES P  P     GG G
Sbjct:    1 MDSPPPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRPPPGSRKGGFSSSRAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDR-GHSNDLLVPAWYNQRTKRWETPAPWNPDYRAAGSEHHAKVSKYHVFESAP--PASRRMGGAG 210          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_068511995.1 (molecular chaperone DnaJ [Caldimicrobium thiodismutans] >BAU22583.1 molecular chaperone DnaJ [Caldimicrobium thiodismutans])

HSP 1 Score: 80.1 bits (196), Expect = 9.600e-12
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY+ILGVPRN++ + IK  YR+LAM  HPDR   GD ++ E+FK ISEAY VL D  +R I D   EG  + G +  G  GF D
Sbjct:    4 KDYYAILGVPRNATQDEIKRAYRRLAMQFHPDR-NQGDKSAEEKFKDISEAYEVLSDPAKRAIYDQ--EG--YVGLKSSGYRGFED 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_038057826.1 (molecular chaperone DnaJ [Thermodesulfobacterium hydrogeniphilum])

HSP 1 Score: 79.3 bits (194), Expect = 1.600e-11
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY+ILG+PRN++ E IK  YR+LA+  HPD+   GD  + E+FK ISEAY VL D  +R I D+Y     ++G +  G  GF D
Sbjct:    4 KDYYAILGIPRNATQEEIKRAYRRLALKYHPDK-NPGDKEAEEKFKEISEAYEVLSDPEKRAIYDNY----GYSGLKSSGYSGFED 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: GBC84998.1 (Chaperone protein DnaJ [bacterium HR11])

HSP 1 Score: 79.3 bits (194), Expect = 1.600e-11
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY-LEGRRFAGARLRGDEG 91
            KDYY+ILGVPRN+++E IK  YR+LA+  HPDR   GD  + E+FK I+EAY VL+D  +R I D Y +EG R     + GD G
Sbjct:    2 KDYYAILGVPRNATEEEIKKAYRRLALQYHPDR-NPGDKEAEEKFKEITEAYSVLIDKEKRAIYDRYGVEGLR---QHVGGDPG 81          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_013906642.1 (molecular chaperone DnaJ [Thermodesulfatator indicus] >AEH43895.1 chaperone protein DnaJ [Thermodesulfatator indicus DSM 15286])

HSP 1 Score: 77.4 bits (189), Expect = 6.200e-11
Identity = 46/86 (53.49%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY ILGV RN+S E IK  YR+LA   HPD    GD  + ERFK ISEAY VL D  +R I D     R + G   RG EGF D
Sbjct:    4 KDYYQILGVSRNASQEEIKKAYRRLARQYHPD-LHPGDKEAEERFKEISEAYEVLSDPEKRAIYD----ARGWRGLHERGYEGFTD 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_082863513.1 (molecular chaperone DnaJ [Thermodesulfatator autotrophicus] >OAG27889.1 molecular chaperone DnaJ [Thermodesulfatator autotrophicus])

HSP 1 Score: 77.4 bits (189), Expect = 6.200e-11
Identity = 46/86 (53.49%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY ILGV RN+S E IK  YR+LA   HPD    GD  + ERFK ISEAY VL D  +R I D     R + G   RG EGF D
Sbjct:    4 KDYYQILGVSRNASQEEIKKAYRRLARQYHPD-LHPGDKEAEERFKEISEAYEVLSDPEKRAIYD----ARGWRGLHERGYEGFTD 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OFV92195.1 (molecular chaperone DnaJ [Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15] >OFW33140.1 molecular chaperone DnaJ [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11])

HSP 1 Score: 77.4 bits (189), Expect = 6.200e-11
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGF 92
            +DYY +LGVPR++SD  IK+ YR+LAM  HPDR  AGD A+ E+FK  +EAY VL D+ +R + D +  G    GA   G  GF
Sbjct:    4 RDYYEVLGVPRSASDGDIKSAYRKLAMKYHPDR-NAGDKAAEEKFKEAAEAYAVLSDTEKRGVYDRF--GHSGVGATAGGPAGF 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: WP_013908856.1 (molecular chaperone DnaJ [Thermodesulfobacterium geofontis] >AEH22156.1 Chaperone protein dnaJ [Thermodesulfobacterium geofontis OPF15])

HSP 1 Score: 77.0 bits (188), Expect = 8.100e-11
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFD 94
            KDYY+ILGVPR+++ E IK  YR+LA+  HPDR   G+  + E+FK ISEAY VL D  +R I D Y     ++G R  G  GF D
Sbjct:    4 KDYYAILGVPRDATQEEIKRAYRRLALKYHPDR-NPGNKEAEEKFKEISEAYEVLSDPEKRAIYDAY----GYSGLRSTGYRGFED 84          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: KKS16239.1 (Chaperone protein DnaJ [candidate division WWE3 bacterium GW2011_GWB1_41_6] >KKS22578.1 Chaperone protein DnaJ [candidate division WWE3 bacterium GW2011_GWA1_41_8] >OGC58327.1 hypothetical protein A2976_03160 [candidate division WWE3 bacterium RIFCSPLOWO2_01_FULL_41_9])

HSP 1 Score: 77.0 bits (188), Expect = 8.100e-11
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVE-RFKAISEAYRVLVDSGQRRILDDY-LEGRRFAGAR----LRGDEG 91
            KDYY +LGVP+N+ DE IK  YR LA + HPD    GD    E RFK I+EAY+VL D  +R++ D Y   G  FAGA+     RG +G
Sbjct:    5 KDYYEVLGVPKNAGDEDIKKAYRNLAREHHPDVVKDGDKTGAEKRFKEINEAYQVLSDPQKRKMYDQYGHAGGGFAGAQGNGPFRGQQG 93          
BLAST of NO02G02670 vs. NCBI_GenBank
Match: OIN95093.1 (molecular chaperone DnaJ [Deltaproteobacteria bacterium CG1_02_45_11])

HSP 1 Score: 77.0 bits (188), Expect = 8.100e-11
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 0
Query:    8 KDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVERFKAISEAYRVLVDSGQRRILDDY----LEGRRFAG 83
            +DYY +LGV RN++D+ +KA YR+LA+  HPDR   GD  + E+FKA +EAY VL D  +R I D Y    LEG  F+G
Sbjct:    5 RDYYEVLGVSRNANDDELKAAYRKLALKYHPDR-TPGDKMAEEKFKAAAEAYGVLRDRQKREIYDQYGHQGLEGTGFSG 82          
The following BLAST results are available for this feature:
BLAST of NO02G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30411.11.900e-8473.24chaperone protein [Nannochloropsis gaditana][more]
WP_068511995.19.600e-1252.33molecular chaperone DnaJ [Caldimicrobium thiodismu... [more]
WP_038057826.11.600e-1148.84molecular chaperone DnaJ [Thermodesulfobacterium h... [more]
GBC84998.11.600e-1152.38Chaperone protein DnaJ [bacterium HR11][more]
WP_013906642.16.200e-1153.49molecular chaperone DnaJ [Thermodesulfatator indic... [more]
WP_082863513.16.200e-1153.49molecular chaperone DnaJ [Thermodesulfatator autot... [more]
OFV92195.16.200e-1150.00molecular chaperone DnaJ [Acidobacteria bacterium ... [more]
WP_013908856.18.100e-1150.00molecular chaperone DnaJ [Thermodesulfobacterium g... [more]
KKS16239.18.100e-1149.44Chaperone protein DnaJ [candidate division WWE3 ba... [more]
OIN95093.18.100e-1150.63molecular chaperone DnaJ [Deltaproteobacteria bact... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02670.1NO02G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574387gene_856Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02670.1NO02G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02670 ID=NO02G02670|Name=NO02G02670|organism=Nannochloropsis oceanica|type=gene|length=1014bp
GTGCGTGTTGTGCTTTGTCCTGTGCGAGGGCCCCATTCGCACTGACTCTC
TGTGTCGTTTCTCTCCCATGACCATACATACATGGGGTAACTGTCCTGGA
CAGGAAAAATGGACTCGCCAACGCCGACCAAGGACTACTACTCCATCCTT
GGCGTTCCTCGGAACTCAAGCGATGAAGCCATTAAGGCCCGCTATCGACA
GCTCGCCATGGACTTGCACCCCGATCGGTGTGCGGCAGGCGATGTGGCCT
CCGTGGAGCGGTTCAAGGCAATATCAGAGGCATACCGAGTGCTGGTGGAC
AGTGGGCAGCGACGCATTTTGGACGATTATTTGGAGGGGAGGAGGTTTGC
CGGGGCCCGCCTTCGGGGGGACGAAGGCTTCTTTGACCGCTTGGCGGGGG
TGCGACGGCCGAAGCCACCTCCCGGGTCAAGAAGAGGAGGAGGTGCATCA
TCCAAGGCGTTTCGATTCATTGAGATTGCTCTTTCACCGCGGGTGTTGGT
GATGGGATTGGGTGTGGGGTTCATGAGCTACATAGCTTTTGGGCCTCGCG
ATGAAAATTTCGACCACACGGAGGGTATGCTGGTGCCGGCGTGGTACAAC
CAAAGgtaggcgatttgtgttgggtcaaaagaactaatgtaccgcgttga
tcttgtcgttgcagcctaaattcatccctttttgtcacaaatcctctcct
cctttttctcgaacacagAACAAAACGTTGGGAGACGCCCGCGCCGTGGG
ACCCCGCCTATCGAGCAGCAGAAACTAAGCATCACGCCAGGGTATCCAAG
TACCATGTGTTTGAGTCCACGCCTCCAGGTCCGGGAGGAGAAAATGCAGG
GGGAGGAGGACGGGATGGAGGAAGCTCCGAGGGAAAAGGTTAGTGTGTAT
ATCTGAAGGGGAGGAGGATGTAAATGGTCATTTGAATAGGAAAGCCAGAG
AATGAGTAGAAAGCGAAGAAGAAAATAAGGGAGTGTACTCATGTGACCAC
TCTCCATTTGAACG
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protein sequence of NO02G02670.1

>NO02G02670.1-protein ID=NO02G02670.1-protein|Name=NO02G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MDSPTPTKDYYSILGVPRNSSDEAIKARYRQLAMDLHPDRCAAGDVASVE
RFKAISEAYRVLVDSGQRRILDDYLEGRRFAGARLRGDEGFFDRLAGVRR
PKPPPGSRRGGGASSKAFRFIEIALSPRVLVMGLGVGFMSYIAFGPRDEN
FDHTEGMLVPAWYNQRTKRWETPAPWDPAYRAAETKHHARVSKYHVFEST
PPGPGGENAGGGGRDGGSSEGKG*
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Synonyms
Publications