NO02G02480, NO02G02480 (gene) Nannochloropsis oceanica

Overview
NameNO02G02480
Unique NameNO02G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1153
Alignment locationchr2:685750..686902 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:685750..686902 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
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BLAST of NO02G02480 vs. NCBI_GenBank
Match: EWM30418.1 (hypothetical protein Naga_100026g55 [Nannochloropsis gaditana])

HSP 1 Score: 377.9 bits (969), Expect = 3.100e-101
Identity = 173/299 (57.86%), Postives = 225/299 (75.25%), Query Frame = 0 
Query:    6 HAPFPHKTWANYLDVLLPLVTGFLVVPLEDAHDAPQWLRELYALSPVTPKFAHEHLVFSRSAWTEGRYYTAVTHCLSHENPSHLFNNISSLVFAGKNVYTHTANTFEFYLIFFSSVGASAYLTTLKDELQLMPMAQSFVPRNPFPSSWRRLHGWYDNKAGKVTRSANHFLSQYVIYRGASAGVFGLIGASAVIQVEELWAWGHEMWMIYRQKTSVDSTTWRRLGLSFLGLGYNFCSLYGMIKGEYLLRSTNDGIGHSFHIDGFVSGAIIYVGVRCAEGVTKYAKGRNRQRGIGRRLGGR 305
            ++ FP KTW  Y++ +LPLV  FLVVP+EDA + P+WLRE+Y+   VT KFAHEHLVFSR+AW EG+++T +T+C SH++ SHL NN+ SL FAG NVY HT+   EFY IFFSS G SAYLTT K+ELQLMPMA+SFVPRNPFPSSW RLHGWY+++A K+  S  HF SQ+V YRGASAG+FG++GA A+I+VEE W W  ++W   R+  SV ++T +RL L    L YN  S+ G ++ E++LRSTNDGIGH+FH+DGF+SG+ IYV ++CA G+  Y +    QR +GR   GR
Sbjct:   10 NSSFP-KTWGGYVETILPLVAAFLVVPVEDARELPEWLREIYSWGLVTSKFAHEHLVFSRAAWNEGKWWTILTYCFSHQDVSHLLNNLFSLTFAGMNVYNHTSTALEFYTIFFSSAGLSAYLTTRKNELQLMPMAKSFVPRNPFPSSWIRLHGWYNSQANKIAESTGHFFSQFVQYRGASAGIFGMVGALAMIEVEEAWLWMRDVWSCIREYGSVATSTRKRLALRCFALCYNALSIRGAVQNEFMLRSTNDGIGHNFHLDGFISGSCIYVAIKCARGLGAYIRRHEIQRRVGRSRKGR 307
The following BLAST results are available for this feature:
BLAST of NO02G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30418.13.100e-10157.86hypothetical protein Naga_100026g55 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006891NSK006891Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02480.1NO02G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574301gene_837Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g55gene250Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02480.1NO02G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02480 ID=NO02G02480|Name=NO02G02480|organism=Nannochloropsis oceanica|type=gene|length=1153bp
ATGCCTGGCCCCTCCCACGCCCCCTTCCCCCACAAGACCTGGGCAAACTA
CTTGGACGTGCTCCTGCCTCTAGTAACAGGCTTTTTGGTCGTGCCCTTAG
AGGATGCGCATGATGCCCCTCAATGGCTGCGGGAACTCTATGCCCTGAGC
CCGGTCACACCGAAATTTGCTCACGAGCACCTTGTCTTTTCCCGCTCAGC
GTGGACGGAAGGCAGGTACTACACCGCCGTGACGCATTGCTTATCCCATG
AGAACCCCTCACACCTATTCAACAACATCTCTTCACTCGTGTTTGCTGGA
AAGAATGTCTACACACACACCGCAAATACCTTTGAATTCTACCTGATTTT
CTTTTCGAGCGTTGGGGCATCGGCCTACCTAACTACGCTGAAGGACGAGC
TCCAACTCATGCCGATGGCACAGTCTTTTGTGCCACGCAACCCTTTCCCG
TCGTCTTGGAGGCGCTTACATGGGTGGTACGACAACAAGGCTGGTAAAGT
CACTCGTTCTGCGAACCATTTTCTTAGTCAGTATGTCATTTATCGGGGCG
CGAGCGCGGGTGTATTCGGTTTGATTGGCGCTTCGGCTGTGATTCAAGTC
GAAGAGTTGTGGGCTTGGGGACATGAGATGTGGATGATCTACCGACAAAA
GACGTCTGTGGATTCGACAACATGGAGGCGGCTGGGTCTAAGCTTCCTGG
GACTAGgtaagaagatgatttaagcttttggaggttggttggtcggggat
gtagatgcataagactttctgactgatcgtgagataggcttgcgcgagtg
agtaaaattatttaatcgcactttctaagtgaaatcaatgagacttaccg
taatgtatggacttcgctagtccattcctgctttgcagacaagcaagtaa
cttacaagcgtcacacactttcgtattagGTTACAACTTTTGCAGCCTTT
ATGGCATGATAAAAGGCGAATATTTGCTCCGGAGCACCAACGATGGTATT
GGCCACAGCTTCCACATTGATGGATTTGTATCCGGGGCGATTATCTATGT
TGGTGTCCGGTGCGCCGAGGGGGTGACAAAGTACGCCAAGGGGCGTAACC
GGCAACGCGGTATCGGTCGTCGTCTGGGAGGGAGAGGGACAACTGAGACT
TAA
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protein sequence of NO02G02480.1

>NO02G02480.1-protein ID=NO02G02480.1-protein|Name=NO02G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MPGPSHAPFPHKTWANYLDVLLPLVTGFLVVPLEDAHDAPQWLRELYALS
PVTPKFAHEHLVFSRSAWTEGRYYTAVTHCLSHENPSHLFNNISSLVFAG
KNVYTHTANTFEFYLIFFSSVGASAYLTTLKDELQLMPMAQSFVPRNPFP
SSWRRLHGWYDNKAGKVTRSANHFLSQYVIYRGASAGVFGLIGASAVIQV
EELWAWGHEMWMIYRQKTSVDSTTWRRLGLSFLGLGYNFCSLYGMIKGEY
LLRSTNDGIGHSFHIDGFVSGAIIYVGVRCAEGVTKYAKGRNRQRGIGRR
LGGRGTTET*
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Synonyms
Publications