NO02G02410, NO02G02410 (gene) Nannochloropsis oceanica

Overview
NameNO02G02410
Unique NameNO02G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6213
Alignment locationchr2:667602..673814 +

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:667602..673814 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002769eIF6
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005730nucleolus
Homology
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: EWM30379.1 (eukaryotic translation initiation factor 6 [Nannochloropsis gaditana])

HSP 1 Score: 463.0 bits (1190), Expect = 7.700e-127
Identity = 233/245 (95.10%), Postives = 242/245 (98.78%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSMA 329
            MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYS+FEQELADHIPVIHASVAGCRFIGRVT+GNK+GLLVPSTTTDQELQHIRNSLPDAVVVQRVE+RLSALGNCIVANDHVALVHTDLDRETEEI+ADVLGVEVFRQTIAGNALVGSYS ITNQGGMVHPKTTVEDLEELSSLLQIPLVAGT+NRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQD +P+NVVK LRTSLIDS+A
Sbjct:   73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA 317
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: XP_002906846.1 (eukaryotic translation initiation factor 6 [Phytophthora infestans T30-4] >EEY66247.1 eukaryotic translation initiation factor 6 [Phytophthora infestans T30-4])

HSP 1 Score: 411.0 bits (1055), Expect = 3.500e-111
Identity = 197/244 (80.74%), Postives = 224/244 (91.80%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSYCL  +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV VGNK+GLL+PSTTTDQE+QHIRN+LPD+VVVQRVE+RLSALGNCI  NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+A P N+   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTNIATTMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: XP_009515984.1 (hypothetical protein PHYSODRAFT_322344 [Phytophthora sojae] >EGZ28709.1 hypothetical protein PHYSODRAFT_322344 [Phytophthora sojae])

HSP 1 Score: 409.8 bits (1052), Expect = 7.800e-111
Identity = 196/244 (80.33%), Postives = 224/244 (91.80%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSYCL  +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV VGNK+GLL+PSTTTDQE+QHIRNSLPD+VVVQRVE+RLSALGNCI  NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+A P ++   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNSLPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPASIATTMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: OWZ10651.1 (Eukaryotic translation initiation factor 6 [Phytophthora megakarya])

HSP 1 Score: 409.8 bits (1052), Expect = 7.800e-111
Identity = 196/244 (80.33%), Postives = 224/244 (91.80%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSYCL  +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV VGNK+GLL+PSTTTDQE+QHIRN+LPD+VVVQRVE+RLSALGNCI  NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+A P ++   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTSIATSMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: XP_008898739.1 (eukaryotic translation initiation factor 6 [Phytophthora parasitica INRA-310] >ETI31135.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica P1569] >ETK71517.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica] >ETL24961.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica] >ETM31439.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica] >ETN16411.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica INRA-310] >ETO59850.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica P1976] >ETP00954.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica CJ01A1] >ETP29090.1 eukaryotic translation initiation factor 6 [Phytophthora parasitica P10297] >KUF85582.1 Eukaryotic translation initiation factor 6 [Phytophthora nicotianae] >KUF94465.1 Tenascin [Phytophthora nicotianae])

HSP 1 Score: 408.7 bits (1049), Expect = 1.700e-110
Identity = 196/244 (80.33%), Postives = 223/244 (91.39%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSYCL  +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV VGNK+GLL+PSTTTDQE+QHIRN+LPD VVVQRVE+RLSALGNCI  NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+A P ++   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDTVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPASIATTMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: CCI42026.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 408.7 bits (1049), Expect = 1.700e-110
Identity = 199/245 (81.22%), Postives = 226/245 (92.24%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSMA 329
            MA R QFENSNEIGVFS++TNSYCL  +GGSENFYS FE ELADHIPVIHAS+AGCRF+GRV VGNK+GLL+P+TTTDQELQHIRN+LPD+VVVQRVE+RLSALGNCIV+NDHVALVHTDLDR+TEEI+ADVLGVEVFRQTIAGNALVGSY  ++NQG +VHP+T+ EDLEELSSLLQ+P+VAGTINRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+A PM+    +R +LIDSMA
Sbjct:    1 MAIRCQFENSNEIGVFSKVTNSYCLVCVGGSENFYSNFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQELQHIRNALPDSVVVQRVEERLSALGNCIVSNDHVALVHTDLDRDTEEIVADVLGVEVFRQTIAGNALVGSYCGLSNQGCLVHPRTSAEDLEELSSLLQVPVVAGTINRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPMSTSSTIRNALIDSMA 245
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: ETL78176.1 (eukaryotic translation initiation factor 6 [Phytophthora parasitica])

HSP 1 Score: 407.1 bits (1045), Expect = 5.000e-110
Identity = 195/244 (79.92%), Postives = 222/244 (90.98%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSYCL  +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV VGNK+GLL+PSTTTDQE+QHIRN+LPD VVVQRVE+RLSALGNCI  NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EE SSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+A P ++   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDTVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEEFSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPASIATTMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: XP_001693606.1 (eukaryotic initiation factor [Chlamydomonas reinhardtii] >PNW74098.1 hypothetical protein CHLRE_13g585150v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 405.2 bits (1040), Expect = 1.900e-109
Identity = 192/245 (78.37%), Postives = 227/245 (92.65%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSMA 329
            MATR QFENSN++GVF++LTN+YC+ ALGG+ENFYSVFE EL+DHIPVI  SVAG R +GR+TVGN+ GLL+P+TT+DQELQHIRN LPD VVVQR+++RLSALGNCIV ND+VAL+H D+DRETEEI+ADVLGVEVFRQT+AGN LVGSY+ +TNQGG+VHPKT++EDL+ELSSLLQIPLVAGTINRGSDV+GAGLVANDWAAFCGLDTTSTE+SV+ES+FKL+DA PMN+V  LR SLID+MA
Sbjct:    1 MATRTQFENSNDVGVFAKLTNAYCICALGGAENFYSVFEAELSDHIPVIKTSVAGTRLVGRLTVGNRNGLLLPNTTSDQELQHIRNCLPDEVVVQRIDERLSALGNCIVCNDYVALIHPDIDRETEEIVADVLGVEVFRQTVAGNVLVGSYAALTNQGGLVHPKTSIEDLDELSSLLQIPLVAGTINRGSDVIGAGLVANDWAAFCGLDTTSTELSVIESVFKLRDAQPMNIVNDLRASLIDTMA 245
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: GAY05047.1 (eukaryotic translation initiation factor 6 [Pythium insidiosum] >GAX94835.1 eukaryotic translation initiation factor 6 [Pythium insidiosum])

HSP 1 Score: 405.2 bits (1040), Expect = 1.900e-109
Identity = 196/244 (80.33%), Postives = 224/244 (91.80%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS+LTNSY L  +GGSENFYS FE ELADHIPVIHAS+AGCRF+GRV VGNK+GLL+P+TTTDQE+QHIRN+LPD+VVVQRVE+RLSALGNCIV NDHVALVHTDLDRETEEI+AD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+A P ++   +R++LIDSM
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNSYALVCVGGSENFYSTFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCIVTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPSSISTTMRSALIDSM 244
[Close]
BLAST of NO02G02410 vs. NCBI_GenBank
Match: CCA14628.1 (eukaryotic translation initiation factor 6 putative [Albugo laibachii Nc14])

HSP 1 Score: 401.4 bits (1030), Expect = 2.800e-108
Identity = 194/244 (79.51%), Postives = 222/244 (90.98%), Query Frame = 0 
Query:   84 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSM 328
            MA R QFENSNEIGVFS++TNSYCL  +GGSENFYS FE ELADHIPVIHAS+AGCRF+GRV VGNK+GLL+P+TTTDQE QHIRN+LPD+VVVQRVE+RLSALGNCIV+NDHVALVHTDLDR+TEEI+AD LGVEVFR+TIAGNALVGSY  ++NQG +VHP+T+ EDLEELSSLLQ+P+VAGTINRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+A PM     +R +LID+M
Sbjct:    1 MAIRCQFENSNEIGVFSKVTNSYCLVCVGGSENFYSNFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQEFQHIRNALPDSVVVQRVEERLSALGNCIVSNDHVALVHTDLDRDTEEIVADALGVEVFRETIAGNALVGSYCGLSNQGCLVHPRTSAEDLEELSSLLQVPVVAGTINRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPMTASSTIRNALIDTM 244
The following BLAST results are available for this feature:
BLAST of NO02G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30379.17.700e-12795.10eukaryotic translation initiation factor 6 [Nannoc... [more]
XP_002906846.13.500e-11180.74eukaryotic translation initiation factor 6 [Phytop... [more]
XP_009515984.17.800e-11180.33hypothetical protein PHYSODRAFT_322344 [Phytophtho... [more]
OWZ10651.17.800e-11180.33Eukaryotic translation initiation factor 6 [Phytop... [more]
XP_008898739.11.700e-11080.33eukaryotic translation initiation factor 6 [Phytop... [more]
CCI42026.11.700e-11081.22unnamed protein product [Albugo candida][more]
ETL78176.15.000e-11079.92eukaryotic translation initiation factor 6 [Phytop... [more]
XP_001693606.11.900e-10978.37eukaryotic initiation factor [Chlamydomonas reinha... [more]
GAY05047.11.900e-10980.33eukaryotic translation initiation factor 6 [Pythiu... [more]
CCA14628.12.800e-10879.51eukaryotic translation initiation factor 6 putativ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02410.1NO02G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574286gene_831Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g61gene244Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02410.1NO02G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02410 ID=NO02G02410|Name=NO02G02410|organism=Nannochloropsis oceanica|type=gene|length=6213bp
CGAGCTTGGTCTTGATGCCCGATTTTCTTTTTTCTTTTATATTCCTTCAC
TATGCATTAGATGCGCGTGTTTTTCTTCCTGTCTCCCTCTTTTCCCATCC
TCATCCTCTAACTCTCTTCATCTATAGAATGGTATTCTTAAAATCCTCGA
CCAACTTCAGGACCTCCCCCGGCGTCCGATCTAACACTTCTAAAGCCACA
GCCCGTTGCTTCGCCACCGGCAAACCCCCGAAAAGCTCGCACAAGTCACC
ATCAATCACTTCCTTGACCGGGGCGTAGTACGAACGGTACGCAACATGAT
CACGTTTGAAGTGCAAATTGGCCTCCTTCCGCATCTCCATCTCGAGCAAA
AAGAACGTGTTCTTCGAACGCCGCGACGAGAAAGGGACCAAAGCTCCGAC
CGTCCCCGCAACAGTCGTATATAAAATGACCTCTTGCCCACCCGGCACCA
GAGCCACCTTTTGCAGCGCAGTCACAACCTCCCCTACGTAAAAATGCGCC
AAAACCTCCACCTTGTTTGGTGCCCCATTCAACCGCCCCGTATCCCACAA
GACGCGGTTCCCGGTCGGGTTGTCCACGTCATCTGACACTTTTTCAGGCA
AACGCAACAGAAACAAGTTGCCAAATTTGTCCCCACCAGCAATAGTGTCG
TAGTCAACAGTGCAGCAAGCCGTGACCGCCCGCGGAGCCGTATCATCGGC
AAACACCACCAATGCATTCTCTGCCCGCCGGTATTTGACAAAATGCACGC
TATCTAACACGTCAGAGACATAAATTCGGTCGCTCATCGTCTGCATCCCT
ACGATGAAATTTGGCAAATTCCGATTCTCGCACTTCTTCAAAAGCTTCTT
CTTCCCCAAGTCGTACATGCGCAAGGAATGCCCTATACCCGCAAGGAGCC
TTCCGAATCCTTTCAATTCGACCAGACTCTTAGGTACATCTTCCACCTCC
GTTTTATGTAGCAACACCAAACGGTTATCAAACAAACGATACACATGAAT
AGCCGCCGCACTATGCTTTCTTGGGTGTAGACACAAATCCGTCGCCGTCC
CTACACATACAAAGACCTCCCCCCCTCTGTCATGGAACGCCACTGTTGCC
AGGGACACAGCCGCCTCGTTCAACGACAACTCCACCAACTCCAAGGTCTC
TCCTGTCCGGCCATCCACGATGCGAATGCACGATGCCCACTTCCCCTCCA
CAGGCGGCAACGGCCCCCGCACAAACGTCTCTCCCTCCGCCTCTTCCTCA
TCTTCTGTTCCTCCTTCAGGAGGCGGTGGGGGAGGCAAAGCCCCCTCCGC
CGCTGCCAACGCCGCAGCAGCCGCCACATCCTCCGGCGCTTCCTCGCCTC
CCTCTCCTCCTCCAGCCGCTCCTCCATGACTATCACCCGCAGCCGCAGCT
TCCGTTGTGGCAAGAAAAGCGCGTTCCGTTTCATTGTATTCGTTGTGGTC
AGATTCGATCAGGACGAGGCGGGAACAGCCTGGAACTTGGACCATTTGCC
TTGGGGTATACCGCAAGGGCACCTCGGTTTGGTTGAACATATTTCCAAAA
TTTTGAATTGTGATAATGCGGAGCGAGCTCCCTGTGACAGCCACAAGACC
TTCTGTGATATATTCAGAGGCAAAATCCGAGGCGTAATCGAGGCTCTCGT
AGGAAAGGGGGGTTTGGAGGAAACGTCCTTGATGGTTGTAGGAGAGCCAG
GTGCGGGAGGAGAGGGCAAGGACGGCGGGGCTGCCTTCGATGTTGACCCG
GAGAAGCTTGACGGGTTTCGCACCGAGGAAACGTTGTCGACTGTCAGAGA
GAGTGCCTTCCAAAGGATCGAGCAGCAGTCTTTGCATAATCCCATTGCTC
AGGCCTACGTTCAAAAACAATGAGGAAGACGACGACGAAGAAGCAGTCGC
AGCACCCCCTGCCCCCTCCCCATCCTTGGCCATCTCCGCCAAACAAACAG
ACTCGGCCCTCACCGACAGTTGCAGCATACTCCGTTGCGTCAAGAGTGAA
ACCTGCTCCAACGACAAAACCCTCACCGTTGAATCATACCCCCCCACTGC
CAGGAAACTCGACCCCACCCTCCCATGTGGCACGGGCCCCAAGTCCAAGC
ACGCCACGGCTAAACCGATCTCCTTCGACGCCACTTCCATCAGCATTCCT
GCGGCGTCCAACTCAAAGTACACCACATCTCCTCCTTCCAACGCAATAGC
GACCTGTCGTTCATTAGCCGAAGCCTGCTCAATCACTTTCCGCCCCGGGG
TTTTCCACTCATTTACAGGCCTTCCAGGCCGAATGTGGCGAATCCCATGC
GTGTGCACCTGCAACATTGCGTTATCCGCCAACAACTTCACCTCCAACGT
CGGCGCCGTACCCAAAAAACCCGAGTCAGTAACTTCCTCAATCTGATCCC
CAATCGAAAATACCAACGTGGCGTTCGTGAACGACACAACAATAAACCGA
TCATGTTTCTCCTCCTGCCTTCCCTTGATCGTCCAAACCGCATTCGGTGT
CCCAGGCAAATCCGAACTTGCCTCCTCTGACACCTGCAATCCATGTCTTA
AAATCCTCAGGCTACTTCTCCCCCCCCTCCCACACAACGTGTAAATCTGC
GCTGCGTCCTCCCCGGCCAAATCAGCCACATGCATCCCCGTGACTGGCGC
AAGGCTCTCTAACACATCGACTGCCGCTAAATTCTTCAATTTTGCCGCCG
GGGTAAACGTAGGAGCAACCTGCGCAGCCTCCTCCGAGCTATCTCCCAAT
TTGTCCTCGTCATCGAGCGCTTCCTCCTCCAAAGAATCAGCAGCCACGGC
CTCAGGATTATCAATGCCCTGAAACTGATACAGCATGTGATTTGCAAACT
CCGATGCACAAAGAAGCAATCCCGTCTTGGTGATACATAGCCCATTCGCC
GACGGGATTGTATCAAACACCTGCATATTGATATTCTGGACCTTCGTCCG
GTCCTCGCTCAAATCCAACGTCACCTTGTACAAATCCCCATACTCCGACT
GCAACAAATAAAACAATACGTCCTTCTGCCGATGCATCGCCGAGGCCGTC
AACAGCGTACCCCTCGAAGCTGGCTGTCCCGCGCGGCGAGGGATGGGTGT
GCGGAGCTCTGGGTGGTCTTGATGTGTGTACGCAACCCAATTCTCTGATA
GGATCAGCACACCCCCCGGGCCATTGGCCCTCTCCCCCGGCACCGCCAGC
AAAGATAAGGCCGTAGATGCAATAGGTTGTGACCACTTTCGTATGACATG
GTTCAACCCCAAGTCCAACTCATAGTATACCAGCTGCTTGTAAGTCTCCG
CTGCTGCTTCCCCCGTGGGGTCCTGATCTGCATCGCTGTAATCCTTCTCT
ATCGCAGCAAAAATGGGGTTTTCTGTCCCCACGTCCAGCCCCACTGTTGC
ATAGACTAATGCATGGGATTTGTGAGCTTCCAGAGGGGAGGAAATGGTAA
GCCGGCCTCCAGCGTCTCGATTCATGACATACACTAGCTTTTGCTTCTCC
ACCGCACTTATCATTATGGCGCGTCCCAGTGGGTCCGCCGCCAAATACTG
CCCAGGCACGATACGACGACAGGCCGACTTTCCAAACGTCTCGCAATGTA
CGGTTCGGAACTCATTCGAGTCCACGACGTACTCTAGGATGGTGATGCGC
CCCGTGTCTGCGCCGACGACCAGATAATCCTTGTTGGTTCCCACTTGCCG
AAAAGTGAGGAGGCAGCGTAAGTTGCAAAAAGTGTTAAACGTACACACAG
GAACCACCTTAAGCCGCTCCGCGTCCGTGCGCAGTAGCTCCAGGTAGCTG
GTCCCACGAATCACCACCACCTCCTGAGCCTTGGGCGAACTAAAGTTGCC
CGATACGGCAGCATGGATGTAACCCGGTCGTTGCAGCGTCAAATTCAGCA
GGCTCAGCGCCGGGGCAATGCCGGTCGACGCCATAGGCTACTGCCAGTTG
CTTGCTATTGGCTTCTCGGCGTGGGATCTTGGGAAGGAGGGTGGCAAGGG
TATCCTCGTCGAAGAGGAATTAGGGTGAAGACCGGGGGAGGGGAGGTCAC
CACGGCCGTCCGTCGTGGTCAGCGATCACTCTTTGGATTTTGACTCACGG
TAACCCTGTGACATGAAGACAGAGAGAAGAAGAGGACGAAGGTGGTGGTG
ATAGCTGTCTAGAGAGAGGGCGGGCAAGAGGGGGAAATGAGGAAGGCCCC
AACCGTGGCCGAAGAAGCTGCAGAAGCCTCGCGCTCTCAATGGACGGGGG
AGGGGAGGTCATTTCCTCCTTGTTGTCTTATTTATTCAATCTGGAACGAC
GCAACCAAGCTCTAAGCCACGCATCACTTCGCTTGAGTAAAGAGTTTGGT
GGCGAAGGGCTGAAGCGGGCTGCAAGTGGTATTGGGATTAGGCGGACGCA
TACTCAACTGAATGATACTGACCCCGTCCTTGCCCATAAACTTCCACAGG
GCACAAGCAACACAAATATCCAAAGCACCCCAGCAGTCATGGCTACACGT
CTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTTTCCAGACTTACCAA
TAGgtaggattggggaaaggcagcgacgttgtaaggggtggggtggggat
gctaatggcccaggtgggcgtgatgccagtcctgcgtgtgtgcttataga
atacaatgctacgaggcatttgagcggatacttgcttgctcttaagacat
agaggctgtagaatgtctcatctccgtgctatggctgtgtgttgcgtggt
gtcgagcgtacgcatccttgcaccgtgtgcagggcatggttggggtcgta
cgtcgcatccatgcaagcaagcgtgcattgtatgctgaactgatatggca
caagagcccattatacgtgtgtttatgcgtaaatacatcaagggcaatgg
tatgatgttactgatgacgcccacacacatctagtcaccacccatgcctc
acaccgcattcctccctgtcccttcaaaaagCTACTGCTTGACAGCTCTG
GGCGGCAGCGAGAATTTCTACAGTGTATTTGAACAGGAGCTGGCAGATCA
TATCCCCGTCATTCATGCCTCGGTGGCTGGTTGCCGGTTCATTGGTCGGG
TGACGGTCGGAAACAAGAAGGGCTTGCTCGTGCCGAGTACGACCACAGAC
CAGGAGCTGCAGCACATTCGCAATTCGTTGCCGGATGCgtgagtatttga
gggtgggaaagagggagaggagaggaaacgtggacaggttgggccataaa
ggattgttgaatgcaccagctcaatggaggtggcgatgcttattcttcct
tcttttttcctccctcaaaatacagTGTGGTGGTGCAGAGGGTGGAGGAC
CGGCTATCGGCCTTGGGGAACTGCATTGTGGCCAATGATCACGTGGCGCT
CGTGCATACCGACTTGGACCGGgtaagaaatcaacctttgtttttccttc
cgcttttgttacgtccagttgttaccgaagtcttcccaattcgccaccca
ctcattcaatcccctcgcattttccgcggtcccagGAAACGGAAGAAATT
CTTGCCGACGTCCTAGGCGTAGAAGTCTTCCGTCAGACAATTGCGGGCAA
TGCGCTGGTAGGCAGCTATTCGATCATTACGAATCAAGGGGGAATGGTGC
ATCCGAAGACGACGGTGGAGGACTTAGAGGAATTGTCTTCATTGCTGCAG
ATCCCCTTAGTGGCGGGGACGATTAATCGGGGGAGCGACGTGTTGGGAGC
GGGGTTGGTGGCGAATGATTGGGCGGCATTTTGTGGATTGGACACCACGT
CGACTGAGgtgcgtttctttggtttggtctgggatttgggggggtgagga
agaggtggagggatgagggaaagggcggggaggtcggactacgtgtcgcg
tatgttgttgagagattatgacccattacattccacaaatacacactcac
gcacacatgcttatttctgaattatagATCAGTGTTGTGGAGTCCATATT
CAAGCTGCAGGATGCGGTGCCCATGAACGTGGTCAAGGGGCTGAGGACGA
GTTTGATCGACTCCATGGCGTAGACGTGTATGTTTGCATATGAAGAGGAA
AATAGAAGCCAGAGGCAAACTCGCGAGACAAATTGATTGTCAGGGGACTG
TAAAAGCACCGCCAAAAGAAGAAAGAACCAGCGCACATCCCTCTCTTAGA
CCAAGAAGCTGAC
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protein sequence of NO02G02410.1

>NO02G02410.1-protein ID=NO02G02410.1-protein|Name=NO02G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MDGGGEVISSLLSYLFNLERRNQALSHASLRLSKEFGGEGLKRAASGIGI
RRTHTQLNDTDPVLAHKLPQGTSNTNIQSTPAVMATRLQFENSNEIGVFS
RLTNSYCLTALGGSENFYSVFEQELADHIPVIHASVAGCRFIGRVTVGNK
KGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDRLSALGNCIVANDHVALV
HTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSIITNQGGMVHPKTTV
EDLEELSSLLQIPLVAGTINRGSDVLGAGLVANDWAAFCGLDTTSTEISV
VESIFKLQDAVPMNVVKGLRTSLIDSMA*
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Synonyms
Publications