NO02G02390, NO02G02390 (gene) Nannochloropsis oceanica

Overview
NameNO02G02390
Unique NameNO02G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr2:661515..662444 -

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Properties
Property NameValue
DescriptionTim21-like mitochondrial-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:661515..662444 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013261Tim21
Homology
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_024575160.1 (transmembrane protein [Plasmopara halstedii] >CEG38791.1 transmembrane protein [Plasmopara halstedii])

HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29
Identity = 70/153 (45.75%), Postives = 105/153 (68.63%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            +L +  + A  +YF+  EL+P+R S N LF+E+ + + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR + +A  K    EE+ AL+ L+
Sbjct:  625 WLGLLGLGAVGVYFVARELLPNRMSPNGLFSESLEFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLTAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIIDNRQILEAETK----EEQDALRQLL 773          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_008911942.1 (hypothetical protein PPTG_15482 [Phytophthora parasitica INRA-310] >ETI32151.1 hypothetical protein F443_20970 [Phytophthora parasitica P1569] >ETK77510.1 hypothetical protein L915_16234 [Phytophthora parasitica] >ETL30951.1 hypothetical protein L916_16129 [Phytophthora parasitica] >ETL84203.1 hypothetical protein L917_15933 [Phytophthora parasitica] >ETM37393.1 hypothetical protein L914_16049 [Phytophthora parasitica] >ETN02727.1 hypothetical protein PPTG_15482 [Phytophthora parasitica INRA-310] >ETO66031.1 hypothetical protein F444_16714 [Phytophthora parasitica P1976] >ETP02008.1 hypothetical protein F441_20833 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 71/152 (46.71%), Postives = 101/152 (66.45%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA     E+ A  Q L
Sbjct:   79 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIVDNR---QILAAETKEEQDALRQLL 227          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: ETI32152.1 (hypothetical protein, variant [Phytophthora parasitica P1569] >ETK77511.1 hypothetical protein, variant [Phytophthora parasitica] >ETL30952.1 hypothetical protein, variant [Phytophthora parasitica] >ETL84204.1 hypothetical protein, variant [Phytophthora parasitica] >ETM37394.1 hypothetical protein, variant [Phytophthora parasitica] >ETO66032.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP02009.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 71/152 (46.71%), Postives = 101/152 (66.45%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA     E+ A  Q L
Sbjct:   42 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIVDNR---QILAAETKEEQDALRQLL 190          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_002997863.1 (transmembrane protein, putative [Phytophthora infestans T30-4] >EEY67838.1 transmembrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV   M K +++YL+VQ  +TG ++ + DNR +  A  K    EE+ AL+ L+
Sbjct:   79 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGYDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKGMKKNEYVYLIVQVTKTGELLKIIDNRQILSAETK----EEQDALRQLL 227          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: KUF81088.1 (Mitochondrial import inner membrane translocase subunit Tim21 [Phytophthora nicotianae] >KUF82513.1 Mitochondrial import inner membrane translocase subunit Tim21 [Phytophthora nicotianae])

HSP 1 Score: 137.5 bits (345), Expect = 7.000e-29
Identity = 70/152 (46.05%), Postives = 100/152 (65.79%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            +L +  + A  +YF+  EL+P+R S N LF+E+ D + +  DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA     E+ A  Q L
Sbjct:   79 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSEKTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIVDNR---QILAAETKEEQDALRQLL 227          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: CCI46004.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 136.0 bits (341), Expect = 2.000e-28
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 0
Query:  156 IAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            + A  +YF++ EL+P+R S N LF+E  + V  N DV +R G P+ GYG D GG REGRRN +EH +   +DG+ RLRI++NI+GP GHA+VFAEV   M K +++YL++Q  +TG ++ + DNR     +  + S EE+ AL+ L+
Sbjct:   75 LGAVGVYFVIRELLPNRMSPNGLFSETLEFVSNNTDVTSRIGLPVHGYGHDHGGHREGRRNRIEHVDLKDKDGNPRLRIKYNIKGPLGHAYVFAEVNQTMKKNEYVYLIIQFTKTGEIIKIVDNR----RILAAESFEEQEALRQLL 217          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: CCA21536.1 (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 133.3 bits (334), Expect = 1.300e-27
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 0
Query:  156 IAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            + A  +YF++ EL+P+R S N LF+E    V  N DV +R G P+ GYG D GG REGRRN +EH +   +DG+ RLRI++NI+GP GHA+VFAEV   M K +++YL++Q  +TG ++ + DNR     LA  +S E+ A  Q L
Sbjct:   73 LGAVGVYFVIRELLPNRMSPNGLFSETLAIVSSNTDVTSRIGLPVHGYGHDHGGHREGRRNRIEHVDLNDKDGNPRLRIKYNIKGPSGHAYVFAEVNQAMKKNEFVYLILQFTKTGEIVKIVDNR---HILAAESSEEQEALRQLL 215          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: OEU21309.1 (hypothetical protein FRACYDRAFT_206320 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 74/172 (43.02%), Postives = 108/172 (62.79%), Query Frame = 0
Query:  139 GEKIGFMRGLA-YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGE-PLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGS 308
            GEK+     L  +  +   A+   Y+I  EL+P++ S N +F++A   ++ N  V  +YG+  +K YG+D GG REGRRNF+EH  Y   EDGSKR R+RFN+EG F  AF FAEV+++M  G+++Y+LVQD ++GRV+T+ DNRA   A   S + +E A     +  G S
Sbjct:   84 GEKVAAASRLTMWAGIFAFASVCAYYIGKELIPTKMSPNTVFSKACKTIRDNSQVKLKYGDSSIKFYGKDHGGHREGRRNFIEHTQYNNEEDGSKRTRVRFNMEGQFASAFCFAEVSNEMSSGEFVYILVQDKKSGRVITVVDNRAALTAKRMSGNNQESAEAMKKLLGGNS 255          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: GAX14511.1 (hypothetical protein FisN_11Hh026 [Fistulifera solaris])

HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27
Identity = 72/173 (41.62%), Postives = 106/173 (61.27%), Query Frame = 0
Query:  139 GEKIGFMRGLA-YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGSQR 310
            GEK+     L  YL +A  AA   Y+I  EL+P++ S N +F+ +F+ ++++               RD GG REGRRNFVEH  YV  +DGSKR R+R+N+EG FG+AF FAEV++ MP G+++Y+LVQD   GRV T+ DNRA   A   +A  +E  +  + + +G + +
Sbjct:   75 GEKVVAATRLGWYLGLASFAAACAYYIGKELIPTKMSPNRVFDRSFEIIRKDPXXXXXXXXXXXXXXRDHGGHREGRRNFVEHTEYVSPDDGSKRTRVRYNLEGRFGNAFYFAEVSNQMPSGEFVYILVQDKSNGRVQTIVDNRAAMTAARLTAGSKEAQSAMSQLLTGSNNK 247          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_008615195.1 (hypothetical protein SDRG_10956 [Saprolegnia diclina VS20] >EQC31354.1 hypothetical protein SDRG_10956 [Saprolegnia diclina VS20])

HSP 1 Score: 131.7 bits (330), Expect = 3.900e-27
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 0
Query:  141 KIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSK-RLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            ++G   G+A L+V        YFIV EL PSR S N LF+EA D V QN  VL R G P++ YGRD GG +EGRRNF+EH     ++G+K RLRI+FN++GP G A  +AE  + M KG+++YL+VQ   TG ++ ++DNR + QA     S EER AL+ L+
Sbjct:   67 QVGMWAGIAGLSVV-----CGYFIVRELFPSRMSPNSLFSEASDIVLQNDMVLQRLGAPIRCYGRDHGGHKEGRRNFIEHVELNDKEGNKTRLRIKFNLQGPNGKAQAWAETYASMNKGEYVYLIVQ-TYTGEIIKIQDNRQILQA----DSEEERDALKRLL 219          
The following BLAST results are available for this feature:
BLAST of NO02G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024575160.11.100e-2945.75transmembrane protein [Plasmopara halstedii] >CEG3... [more]
XP_008911942.11.400e-2946.71hypothetical protein PPTG_15482 [Phytophthora para... [more]
ETI32152.11.400e-2946.71hypothetical protein, variant [Phytophthora parasi... [more]
XP_002997863.13.200e-2946.41transmembrane protein, putative [Phytophthora infe... [more]
KUF81088.17.000e-2946.05Mitochondrial import inner membrane translocase su... [more]
CCI46004.12.000e-2845.58unnamed protein product [Albugo candida][more]
CCA21536.11.300e-2746.58transmembrane protein putative [Albugo laibachii N... [more]
OEU21309.11.700e-2743.02hypothetical protein FRACYDRAFT_206320 [Fragilario... [more]
GAX14511.11.700e-2741.62hypothetical protein FisN_11Hh026 [Fistulifera sol... [more]
XP_008615195.13.900e-2747.85hypothetical protein SDRG_10956 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006880NSK006880Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02390.1NO02G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523331gene_827Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g12gene241Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02390.1NO02G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02390 ID=NO02G02390|Name=NO02G02390|organism=Nannochloropsis oceanica|type=gene|length=930bp
ATGGCAGGCCTTGTAATCGTCGTGACGAAGGCCGCAGGACCATCTACCCG
TCGCGCGCTGTTGGCCAGGGCAAGAGGGGGAGCGGCTCGTAGACCTCTTT
CGACAGGCGGAGTATCATCTGCTTCGACTGGTCTCCCCACCACTGCCACC
ACACACCTCCTCCTTCCCAAGCGCTACCAGCCCTCTTCGATGCTGGTCCC
GTTGCTGGGCACACAGATGAATGGATGCATGCGGCGGACCGGTGGCTGGC
GGGGTCAAAGCAGAGGAGGCAACCCATCGTCTCCAGCGGCAGCAGGTTTT
AGCACCAAGAACGAGGATGCGGGGGGAAGAAAGGAGGAGGAAGAGGAAGA
GAAAAACCAAGAGAAGCAACAGCAAGAAGAAGAAGAACCGGAAACCGAGG
GCCCGCCGGAGGATGGGGAAAAGATAGGGTTCATGCGTGGATTAGCTTAC
CTAACCGTGGCCGTCATTGCGGCGGGTTCCTTGTACTTTATCGTGGACGA
GCTCATGCCCAGTCGCACGAGCGCCAACCACCTCTTTAACGAGGCATTCG
ACGCAGTGAAACAAAACCATGACGTGTTGAATCGGTACGGGGAGCCATTG
AAAGGTTACGGCCGGGATGGGGGGGGACGGCGGGAGGGACGCAGAAATTT
TGTGGAGCATAAGAATTATGTGGGGGAGGATGGGAGTAAGAGGCTGCGGA
TTCGCTTTAACATTGAAGGGCCATTTGGACACGCGTTTGTATTTGCAGAG
GTGACATCAGACATGCCCAAGGGACAATGGATGTATTTATTGGTCCAGGA
CATTCAAACGGGGCGGGTGATGACGTTGGAAGATAACCGTGCCATGCACC
AGGCCTTGGCCAAGTCGGCCTCGCCCGAAGAGAGGGCGGCGTTGCAGGCG
TTGATACAGAGTGGAGGAAGCCAGCGGTAA
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protein sequence of NO02G02390.1

>NO02G02390.1-protein ID=NO02G02390.1-protein|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MAGLVIVVTKAAGPSTRRALLARARGGAARRPLSTGGVSSASTGLPTTAT
THLLLPKRYQPSSMLVPLLGTQMNGCMRRTGGWRGQSRGGNPSSPAAAGF
STKNEDAGGRKEEEEEEKNQEKQQQEEEEPETEGPPEDGEKIGFMRGLAY
LTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPL
KGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAE
VTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQA
LIQSGGSQR*
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Synonyms
Publications