NO02G02310, NO02G02310 (gene) Nannochloropsis oceanica

Overview
NameNO02G02310
Unique NameNO02G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr2:648657..649427 -

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Properties
Property NameValue
DescriptionAlpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:648657..649427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005759mitochondrial matrix
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006974cellular response to DNA damage stimulus
GO:1902445regulation of mitochondrial membrane permeability involved in programmed necrotic cell death
GO:0016043cellular component organization
GO:0008219cell death
GO:0008152metabolic process
GO:0006950response to stress
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR032870ALKBH7
IPR027450AlkB-like
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO02G02310 vs. NCBI_GenBank
Match: OQR84536.1 (hypothetical protein ACHHYP_13284 [Achlya hypogyna])

HSP 1 Score: 145.6 bits (366), Expect = 2.100e-31
Identity = 90/213 (42.25%), Postives = 128/213 (60.09%), Query Frame = 0
Query:   35 TSSAVASVETSHSLLDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRD 248
            +SSA +   + H  +D +    P    S +QV+ DVI+ +EE RL  E    +RRRRY  +HWD VI N++E+E   W     + LA  +++L    +  P    F  VHVIDLA +G+IKPHVDS+KFSG IV+G+SL SP +M+ +  ++ G   L +    LR RS Y +SG  RY+Y HEIL   PG + +  G  +AR RR+S++FRD
Sbjct:   15 SSSAYSWAASDH--VDRALCCDPFLVPSDLQVMHDVISEDEELRLADEAATLLRRRRYETDHWDQVIVNFKEMETSKWTAEAKQILA-HLRSL---PVMPPQLSYFPTVHVIDLAEEGYIKPHVDSIKFSGQIVAGISLLSPCVMRFQ--EEHGPSRLDV---HLRRRSFYCMSGGIRYRYTHEIL---PGLQAF-QGHDIARTRRISIMFRD 212          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: ETI38507.1 (hypothetical protein F443_15787 [Phytophthora parasitica P1569])

HSP 1 Score: 144.8 bits (364), Expect = 3.600e-31
Identity = 92/238 (38.66%), Postives = 135/238 (56.72%), Query Frame = 0
Query:   24 PLSCPVI--CHLSTSSAVASVETSHSL------LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            PL C ++    L +SSAVA+   S SL      LD ++   P      +Q++ DVIT +EE  L  E    ++RRR+  NHWD VI  Y+E+E+  W          RI   +      P  L + P VHVI+LA DG+IKPHVDS+KFSG +V+G++L SP+IM+ K +        S++   L+ RS+Y+++G  RY Y HEIL   PG + +   V V R  R+S++ RDE +++
Sbjct:    6 PLRCSLVPLRRLLSSSAVAA-PPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-----STETQRILQKVREVAILPRDLTYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKEEHGD-----SVIDAYLQRRSMYMMTGRVRYHYTHEIL---PGAQVFRGEVPVNRTHRISIMLRDEFLEE 229          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_008895359.1 (hypothetical protein PPTG_04812 [Phytophthora parasitica INRA-310] >ETK78706.1 hypothetical protein L915_15337 [Phytophthora parasitica] >ETL32139.1 hypothetical protein L916_15231 [Phytophthora parasitica] >ETN19524.1 hypothetical protein PPTG_04812 [Phytophthora parasitica INRA-310] >ETO67273.1 hypothetical protein F444_15765 [Phytophthora parasitica P1976] >ETP08399.1 hypothetical protein F441_15615 [Phytophthora parasitica CJ01A1] >ETP36450.1 hypothetical protein F442_15624 [Phytophthora parasitica P10297] >KUF83127.1 Alpha-ketoglutarate-dependent dioxygenase alkB 7 [Phytophthora nicotianae])

HSP 1 Score: 144.8 bits (364), Expect = 3.600e-31
Identity = 92/238 (38.66%), Postives = 135/238 (56.72%), Query Frame = 0
Query:   24 PLSCPVI--CHLSTSSAVASVETSHSL------LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLP-VHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            PL C ++    L +SSAVA+   S SL      LD ++   P      +Q++ DVIT +EE  L  E    ++RRR+  NHWD VI  Y+E+E+  W          RI   +      P  L + P VHVI+LA DG+IKPHVDS+KFSG +V+G++L SP+IM+ K +        S++   L+ RS+Y+++G  RY Y HEIL   PG + +   V V R  R+S++ RDE +++
Sbjct:    6 PLRCSLVPLRRLLSSSAVAA-PPSQSLWQDVYNLDATHCHDPLVSEDDLQLMLDVITDDEEKVLSDECARILKRRRFEENHWDDVIIKYKEMERSRW-----STETQRILQKVREVAILPRDLTYFPAVHVIELAEDGYIKPHVDSIKFSGRVVAGINLLSPSIMRFKEEHGD-----SVIDAYLQRRSMYMMTGRVRYHYTHEIL---PGAQVFRGEVPVNRTHRISIMLRDEFLEE 229          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_022163221.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Myzus persicae])

HSP 1 Score: 144.8 bits (364), Expect = 3.600e-31
Identity = 74/190 (38.95%), Postives = 118/190 (62.11%), Query Frame = 0
Query:   59 FDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDE 249
            FD+S + ++PD+++ EEE+RL+ E+E++++R RY  +HWD  I  YRE E   W D  N  +  +++N +       +T     VHV+DL + G++KPH+DS +F G+I++GLSL S ++M+L    D+      +V  LL  RSLYI+   ARY+Y HEIL  S G     +  ++ R RR+S++ R+E
Sbjct:   75 FDSSFI-IVPDIVSVEEESRLIDEIEKSLKRLRYQHDHWDDAIHGYRETEIIKWKDQNNSNVIQKLRNRVF--ADESITEQMQRVHVLDLCDSGYVKPHIDSTRFCGNIIAGLSLLSDSVMRL---ADEKCPDTYVVYALLPRRSLYIMKDAARYQYTHEIL--SDGAPSVFNDRLIVRERRVSIVMRNE 256          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_001942777.2 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Acyrthosiphon pisum])

HSP 1 Score: 144.4 bits (363), Expect = 4.800e-31
Identity = 75/197 (38.07%), Postives = 121/197 (61.42%), Query Frame = 0
Query:   62 SSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEIL---APSPGGERWVDGVVVARGRRLSLIFRDEKVQQQEE 256
            SS  ++PD+++ +EE+RL+ E+E++++R RY  +HWD  I  YRE E   W D  N  +  +++N +       +T     VHV+DL + G++KPH+DS++F G+I++GLSL S ++M+L  +K      + +V  LL  RSLYI+   ARY+Y HEIL   APS   +R      + R RR+S++ R+E   + E+
Sbjct:   71 SSFTIVPDIVSVDEESRLIDEIEKSLKRLRYQHDHWDDAIHGYRETEIITWKDQNNSNVIQKLRNRV---FAESITEQMQRVHVLDLCDKGYVKPHIDSIRFCGNIIAGLSLLSDSVMRLADEKH---PDIYVVYALLPRRSLYIMKDSARYQYTHEILSDGAPSVFSDR-----QIVRERRVSIVMRNEPPVEAEK 256          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_002426271.1 (GTPase mss1, putative [Pediculus humanus corporis] >EEB13533.1 GTPase mss1, putative [Pediculus humanus corporis])

HSP 1 Score: 144.4 bits (363), Expect = 4.800e-31
Identity = 77/189 (40.74%), Postives = 117/189 (61.90%), Query Frame = 0
Query:   62 SSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILA--PSPGGERWVDGVVVARGRRLSLIFRDE 249
            + ++V+ D IT EEE  L+ EL  +++R RY   HWD+ I+++RE EK  W +P N  + +R+KN +         +P   VHV+DL   G I PH+DS+KF G  ++GLSL S ++M+L   KD+      IV +LL+  SLYI++G+ARY Y HEIL    S  G++     ++ +GRR+S+I R+E
Sbjct:  519 TGIKVIDDFITNEEENSLLLELNSHLKRMRYETGHWDNAIKDFRETEKSEW-NPNNFKIIERVKNFVFEN----QVVPIKQVHVLDLKETGVILPHIDSIKFCGSTIAGLSLLSDSVMRLVHSKDK----KKIVDVLLKRCSLYIMTGDARYNYTHEILGNDNSKFGDK-----IIKKGRRISVICRNE 693          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: PAV70966.1 (hypothetical protein WR25_20941 [Diploscapter pachys])

HSP 1 Score: 144.1 bits (362), Expect = 6.200e-31
Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 0
Query:   63 SVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRD 248
            S+ V+PD IT EEE  +  ELE +++R RY  +HWD  I NYRE E+R      N  +  RI++       + +T     VH++DL  +G IKPH+DS+++ GD+++G+SL S ++M+L+  KD  MD L IV L L+ RSLY LSG ARY + HEIL  +   E   DG+ V R RR+S+I RD
Sbjct:    4 SIAVVPDFITEEEETTIFNELEPHMKRLRYEKSHWDDAINNYREREQRTKWREENARIVQRIRDFAFPANAQHLT----QVHILDLHEEGVIKPHIDSIRYCGDVIAGVSLLSSSVMRLR-HKD-SMDEL-IVDLYLKRRSLYKLSGIARYDFKHEILDKN---ESMFDGIEVPRKRRISIICRD 178          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_003216811.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Anolis carolinensis])

HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30
Identity = 85/183 (46.45%), Postives = 113/183 (61.75%), Query Frame = 0
Query:   66 VLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFL-PVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRD 248
            V+P  ++ EEEA LVAELE  +RRRRY   HWD  I  YRE EK  W    ++ L  R+++  L     P  +P L  VHV+DLA  G+IKPHVDSVKF G  ++GLSL S ++M+L  ++    +P   + LLL  RSLYIL G ARY+Y HEIL      + + +G  V R RR+S+I R+
Sbjct:   45 VVPGFLSEEEEALLVAELEPQLRRRRYEEEHWDGAIHKYRETEKSHWSKESHEIL-QRVRDAAL-----PPGVPQLSQVHVLDLAKTGYIKPHVDSVKFCGCTIAGLSLLSSSVMRLVHEQ----NPQDCLDLLLERRSLYILRGPARYEYTHEILKDE---DSFFNGRKVPRERRISVICRN 214          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: XP_012539538.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial [Monomorium pharaonis])

HSP 1 Score: 142.1 bits (357), Expect = 2.400e-30
Identity = 79/187 (42.25%), Postives = 118/187 (63.10%), Query Frame = 0
Query:   62 SSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDE 249
            ++++VLP+ I+ EEE  +V E++  ++R RY  +HWD+ I  YRE E + W +  +K L DR++         P T+    VH++DLA +G+IKPH+DSV+F G I++GLSL S ++M+L     +G +   +   LL  RSLYI+SG ARYKY HEIL      E + +G  V +GRR+S+I R E
Sbjct:   54 NTMRVLPNFISEEEEDIMVQEVDPYMKRLRYEYSHWDNAIHGYRETEWKKWSEKSSKVL-DRVRRKAF----PPETIHLSLVHILDLAPEGWIKPHIDSVRFCGGIIAGLSLLSDSVMKL---AMEGHEKERVACFLLPRRSLYIMSGVARYKYNHEILKSE---ESYFEGRHVPKGRRISIICRSE 229          
BLAST of NO02G02310 vs. NCBI_GenBank
Match: ETE71264.1 (putative alpha-ketoglutarate-dependent dioxygenase ABH7, partial [Ophiophagus hannah])

HSP 1 Score: 141.4 bits (355), Expect = 4.000e-30
Identity = 86/183 (46.99%), Postives = 108/183 (59.02%), Query Frame = 0
Query:   66 VLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFL-PVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRD 248
            V PD I+ EEEA L  ELE  +RR RY   HWD  I  YRE EK  W    N+ L  R++N        P  +P L  VHV+DL   G+IKPHVDSVKF G  ++GLSL S ++M L  ++    +P   + LLL  RSLYIL G ARY++ HEIL      E + DG  VAR RR+S+I R+
Sbjct:    6 VTPDFISEEEEALLARELEPQLRRHRYQDEHWDGAIHKYRETEKSYWSKECNEIL-QRVRNAAF-----PPGVPQLTQVHVLDLDKSGYIKPHVDSVKFCGCSIAGLSLLSTSVMHLVSEQ----NPQDWLDLLLERRSLYILRGPARYEFTHEILKDE---ESFFDGRKVARERRISVICRN 175          
The following BLAST results are available for this feature:
BLAST of NO02G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR84536.12.100e-3142.25hypothetical protein ACHHYP_13284 [Achlya hypogyna... [more]
ETI38507.13.600e-3138.66hypothetical protein F443_15787 [Phytophthora para... [more]
XP_008895359.13.600e-3138.66hypothetical protein PPTG_04812 [Phytophthora para... [more]
XP_022163221.13.600e-3138.95alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
XP_001942777.24.800e-3138.07PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_002426271.14.800e-3140.74GTPase mss1, putative [Pediculus humanus corporis]... [more]
PAV70966.16.200e-3144.32hypothetical protein WR25_20941 [Diploscapter pach... [more]
XP_003216811.11.400e-3046.45PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_012539538.12.400e-3042.25PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
ETE71264.14.000e-3046.99putative alpha-ketoglutarate-dependent dioxygenase... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006873NSK006873Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02310.1NO02G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550017gene_818Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g5gene234Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02310.1NO02G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02310 ID=NO02G02310|Name=NO02G02310|organism=Nannochloropsis oceanica|type=gene|length=771bp
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
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protein sequence of NO02G02310.1

>NO02G02310.1-protein ID=NO02G02310.1-protein|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MSLLVVSAACRLVLSHCRKRSRPPLSCPVICHLSTSSAVASVETSHSLLD
FSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSV
IENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLAN
DGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLR
PRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKV
QQQEEI*
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Synonyms
Publications