NO02G02180, NO02G02180 (gene) Nannochloropsis oceanica

Overview
NameNO02G02180
Unique NameNO02G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2790
Alignment locationchr2:612287..615076 +

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear cap-binding protein subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:612287..615076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0000339RNA cap binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0051028mRNA transport
GO:0045292mRNA cis splicing, via spliceosome
GO:0016070RNA metabolic process
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR027159CBP80
IPR015172MIF4G-like_typ-1
IPR015174MIF4G-like_typ-2
Homology
BLAST of NO02G02180 vs. NCBI_GenBank
Match: EWM30449.1 (nuclear cap-binding protein subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 1329.3 bits (3439), Expect = 0.000e+0
Identity = 662/857 (77.25%), Postives = 734/857 (85.65%), Query Frame = 0
Query:   79 PKTKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDE------XXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRPGRDLAYLHRLLLQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVAVYGELIKRALGPHPPVAEQGEEARARQLAGEETMEHGVVAVENAQDLVLELVEGLCKVLAEGLGSEEEKGKEWVRAGLSYLRGSLQTFLKLEEKGVNRAIPGTEAVFDMEKVEEAVGDLEAVPAALQEVLKDSRRYVEERQVLGGGFSHGQVFTDEE 930
            PKTKEDEI  Q+KALLVRVGDFHHI+TSLSSLEENVEGLAGALGDELATFGD +ADFVLTAA QLSLQTPVYATLVGLLNARDE+FGAKVV+GGAVRLDAMIRQGRW+NAKLVLRFL ELVNARVVKA+GEGSLGE+LTTL GPL EPD  VPP RKDLYLYLVVSVLPWVWDALA+EWPDGLPALLET FAY DRRVPL+ K+GVRCVL+A L+DE++                  IQ AL V K LAATL+E Q S+EIN+IVKPW+ VK++L+QGIRH IP + LPDPDP  LA G FPLPLHPCFAEFDLFDAESGGQAASVA L  IERWVLRE LKDSLVTFRP+VNEAGNKRGSF AEVEQLYSISYLAPP+VATE LVAE LLLWL+QRP RDLAYLHRLLLQVVQTPKAAGS+ALGLH+LFQD L+VLDHGA+ QLA+WFGAHLTNT F FPYWDAWAGL+AEQE     ED PQ++FLRR LDVAARQ+YV KVKEH+P+SLH YVP DPYSLSPYL R AAVEE+   D+  T+ILK LVRHF+AVLQG++  +EVQ WLD+   PPA++A  DP WRVTLV HALSRISDDTVAHLPALLEKCLGWFR LFEADEHQLRMVEA +EVW GSPQMLLLALNAVMRMHMVLPVN++ WLVRPE ARRY +D LY DLF DA+DRSLESVA YGELI RALGPHPP   Q EEARARQ AGEET+EHG+VAVENAQDL+LELVEGL KVL EGL S  E+  EWVRAGL+YLRG+LQ +L+LEEKG+NR IPGTE VFD+ KVEE++G LE++  AL  V+ D RRY+++RQV GG  +HGQVF+DEE
Sbjct:  111 PKTKEDEIMTQIKALLVRVGDFHHITTSLSSLEENVEGLAGALGDELATFGDLIADFVLTAACQLSLQTPVYATLVGLLNARDEDFGAKVVQGGAVRLDAMIRQGRWINAKLVLRFLCELVNARVVKAEGEGSLGEVLTTLAGPLKEPDAAVPPARKDLYLYLVVSVLPWVWDALAQEWPDGLPALLETTFAYADRRVPLYLKKGVRCVLDASLEDEEDGVEEAGASGHPVEPATDSIQRALRVVKTLAATLEEGQASLEINAIVKPWKGVKEELSQGIRHAIPPLTLPDPDPMVLATGGFPLPLHPCFAEFDLFDAESGGQAASVATLPPIERWVLRECLKDSLVTFRPYVNEAGNKRGSFAAEVEQLYSISYLAPPEVATEFLVAEVLLLWLVQRPSRDLAYLHRLLLQVVQTPKAAGSMALGLHILFQDYLEVLDHGAVTQLANWFGAHLTNTQFTFPYWDAWAGLVAEQE----AEDHPQRYFLRRALDVAARQSYVGKVKEHIPASLHPYVPEDPYSLSPYLPRAAAVEEDNAADAASTQILKVLVRHFQAVLQGQMPAAEVQAWLDSSVAPPADIATSDPLWRVTLVAHALSRISDDTVAHLPALLEKCLGWFRQLFEADEHQLRMVEALAEVWAGSPQMLLLALNAVMRMHMVLPVNLVAWLVRPETARRYAQDALYHDLFVDAVDRSLESVANYGELISRALGPHPPATGQSEEARARQCAGEETVEHGIVAVENAQDLLLELVEGLSKVLGEGLASSAEQASEWVRAGLAYLRGTLQIYLQLEEKGLNRVIPGTEPVFDLSKVEESIGPLESLHPALHGVMLDVRRYIDDRQVFGGVHAHGQVFSDEE 963          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_003287934.1 (hypothetical protein DICPUDRAFT_55124 [Dictyostelium purpureum] >EGC35563.1 hypothetical protein DICPUDRAFT_55124 [Dictyostelium purpureum])

HSP 1 Score: 204.9 bits (520), Expect = 1.100e-48
Identity = 172/704 (24.43%), Postives = 324/704 (46.02%), Query Frame = 0
Query:   80 KTKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDL--AQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRPGRDLAYLHRLLLQVVQT-PKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGE-----EGG--ED-----SPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSL 769
            +  ED+ K+++ +L+VR+GD      + SSLE N+E LA AL  ++   G  + D +     QL+ + PVY TLVGL+NA++ EFG ++V      + + + + +++  KL+++F+ ELVNA V+      S+ EL  +LL  LN    T    + D ++YLV+  +P + + L+K     + A++E   +Y + R    KK         GL D+              ++T     K L    ++ +    +NSI+KPW++  + L   +  +H +P I   D D       +   P +     F LF+ +             IE+ +++EY+ D L     F N    +   F+  +   + I      DV  E L  E   ++LL  P   + Y   + +   ++ P      A  ++LLF +N+D LD   + + A  F  HL+N  + +  W  WA  L     E     EG   ED     + +  F++RV+    R +Y+ K+K+++P+  H Y+P  P     +L+ E   EEN           KELV     +L    +   +++ +   +  P+ +        V L+T  + +I   + +HL   +E+ L  F+ + ++ + +   + +  E W  S Q +++ ++  +   ++ P++ + W ++PE   R+  +    ++  ++I +++
Sbjct:   21 RDSEDDFKSKLTSLIVRIGD-----KATSSLESNIEALANALLADIPKHGTLIQDILFKCISQLTYKAPVYGTLVGLINAKNFEFGKEIVCRLVDEILSALNKKKFIQVKLLIKFIPELVNANVLSVQ---SIFELYESLLSILNTSSYT--QNKADFFVYLVLLTIPHIGELLSKNHFGQISAVIEECESYVESRSTSDKK--FYQSYNNGLSDD-------------KLETLFKQIKNLK---NDPENPWVVNSILKPWKNFTEQLLNPEVQQHILPTINFTDDD-------SIEYPQNLNKPLFRLFNEDQ---------YISIEKSIVQEYILDILY----FFNSDHKEAAKFIYSLPVQFEID-----DVVVETLFGE---MFLLPEPTFKVIYYSVIFIDFFKSQPSVIPVFAYAINLLF-ENIDKLDFEIMDRFALAFAHHLSNFDYKW-IWSDWAQALQPINPENPPMVEGATIEDLIKLQNLKIIFIKRVIQSLCRLSYLDKIKQNLPADYHQYLPPAPNPNFKFLSSENPEEEN-----------KELVSQSHKLLLSFKTKEPLENLIQTFSAIPSSINC------VELLTKCILQIGSTSFSHLTYAIERYLTLFKTVLKSQDDRQECLRSIFEFWKYSQQHIVIVVDKFITFKIIYPIDTVTWFMKPENISRFITESFTWEILHNSIQKTI 649          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_646314.1 (initiation factor eIF-4 gamma middle domain-containing protein [Dictyostelium discoideum AX4] >Q55D17.1 RecName: Full=Nuclear cap-binding protein subunit 1; AltName: Full=80 kDa nuclear cap-binding protein; Short=CBP80; Short=NCBP 80 kDa subunit >EAL72257.1 initiation factor eIF-4 gamma middle domain-containing protein [Dictyostelium discoideum AX4])

HSP 1 Score: 187.6 bits (475), Expect = 1.800e-43
Identity = 164/725 (22.62%), Postives = 317/725 (43.72%), Query Frame = 0
Query:   83 EDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDL--AQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALL--LWLLQRPGRDLAYLHRLLLQVVQT-PKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSP----------------------------------QQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSL 769
            E++ K+++ +L+VR+GD      + SSLE N++ LA AL  ++      + D +      L+ +TP+YATLVGL+N ++ EFG +VV      + + + + ++ NAKL++RF+ ELVNA V+  +   ++ EL  TLL  LN  D T  P + D +++LV+S +PW+ + L+      L A++E   +Y   R    KK         G  D+              +++ L   K+L     +  +   +N I++P++   + L  +   +H +P I  P+ +             +P      LF   S     SV      ER+++ +Y+ D L     F N    +   F+          Y  P +   + +V E +L  +++L  P     Y   L +   ++ P      A  ++LLF +N+  LD   + + A  F  HL+N  + +  W  WA  L                                               +  +++RVL    R +Y+ K+K+++PS  H Y+P  P     +L  +   EE+           KEL+     +L    +   +++ + +VAN P+ +        V L+T  + +I   + +HL   +E+ +  F+ + ++ + +   + +  E W  S Q +++ ++  +   ++ P++ + W ++PE   R+  +    +   ++I +++
Sbjct:   33 EEDFKSKLTSLIVRIGD-----KATSSLESNIDALANALLADIPKQSSLIQDILFKCVSSLTYKTPIYATLVGLINVKNSEFGKEVVCRLVDEIFSAMEKKKFHNAKLLIRFIPELVNANVLTIN---AIFELYETLLSVLNTSDYT--PNKADYFVFLVLSTIPWIGEHLSHNHSGQLDAVIEECESYIQSRSTGDKK--FYQAYNNGYTDD-------------RLESMLKQIKSLR----DCDQPWIVNGILRPYKHFNETLTSSSSQQHILPTIHFPEDEKLE----------YPNNLNKPLFRVLSNDNNNSV------ERYIVEDYIIDIL----SFFNSDHKECSKFI----------YSLPVENEIDDIVVETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIPVFAYAINLLF-ENIHKLDFEVMDRFALAFAHHLSNFDYKW-IWSDWAQSLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQIRNRELRIIYIKRVLSSLCRLSYLEKIKQNLPSEYHQYLPPSPAPTFKFLNADNPEEES-----------KELIAESHKLLLSFKTKEPLENIISHVANIPSHINI------VELLTKCILQIGSTSFSHLTYAIERYITLFKTVLKSQDDRQECIRSIFEFWKLSHQHIVIVVDKFVTFKIIYPIDTVTWFMKPENIDRFITEPFTWECLHNSIQKTI 679          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: KYR00264.1 (initiation factor eIF-4 gamma middle domain-containing protein [Tieghemostelium lacteum])

HSP 1 Score: 186.4 bits (472), Expect = 4.000e-43
Identity = 159/665 (23.91%), Postives = 302/665 (45.41%), Query Frame = 0
Query:   84 DEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRPGRDL--AYLHRLLLQVVQTPKA-AGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPE 746
            +++K ++ +L++++GD        S++E N++GL  AL  ++ T  + + + +     QL  +TP+Y T+VG++NA++ EFG +VV      +++ + + ++   KL++RF+ EL+NA V+      ++ EL  TLL  LN    T    + D Y+YLV++ LPW+ + L+K     L AL+E   +Y   R    KK       +   + +D+            +++ L   K+L       + +  ++SI++P+   ++ L    +H +P IV+PD      +   +PL    CF   D               +  IE++++ EYL D +  F     EA             LYS+    P     + +V E +L  + + P       Y   L + + +T ++   + A   + LF + LD LD   I + A  F  HL+N  + +  W+ W  +L     ++      +++F++RVL+   R +Y+ K+K  +P   HAY+P        +      V    +T  P     KELV     +L    +   +   + ++AN PA +        V L+T  +  I   + +HL   +E+ +  F+ +F+        + +  E W  S Q  ++ ++  +   ++ P + + +  RPE
Sbjct:   22 EDLKNRLTSLIIKIGD-----KPSSAIESNIDGLVNALLHDITTQKEAIQNILFKCISQLPYKTPIYGTIVGIINAKNAEFGKEVVCRLVDEINSALLKKQFNQLKLLIRFIPELINANVLPIT---AIFELFETLLSFLNSNSYT--QNKSDYYVYLVLATLPWIGERLSKTNLGQLNALVEEVESYFSTRSNSEKK-----FYQPYKESDDK------------LESILKYIKSL-----RDESNWHVDSILQPYLHFQEVLNTATQHILPPIVIPDD-----SKYEYPLFTGSCFRLID------------DLPMKPIEKFIVEEYLVDIMYFFNSNHREAS----------RFLYSL----PVTFEIDEIVVECILSEIFRLPESTFKPIYYSVLFIDLFKTQQSIIPAFAFATNHLF-ETLDQLDIEIIDRFAGAFAHHLSNFDYKW-IWNDWEPILVGDSADQ--STLLKRYFIKRVLESIVRLSYLEKIKSVLPLEYHAYLPPSVSPCFKFYQETTDVSMGDKTVEPMEN--KELVSESHKLLLLFTTKEPLDGIISHIANIPASVNV------VELLTKCILHIGVTSFSHLTYAIERYITLFKAVFKTPADHQECIRSILEFWRNSQQHQVIVIDKFVTFKILNPQDTIQYFFRPE 611          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_004929717.1 (nuclear cap-binding protein subunit 1 [Bombyx mori])

HSP 1 Score: 184.5 bits (467), Expect = 1.500e-42
Identity = 180/702 (25.64%), Postives = 308/702 (43.87%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRPG---RDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANP--PAELAARDPY----WRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVA 773
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L+TF   +   +   A ++  +  +YATLVGLLNA++  FG + V          ++ G+W  A+  LRF+A+LVN  V+ A    SL  LL TL+   NE  + VP  R+D +++ V+S LPWV   L ++    L  LL T   + ++R    KK      L+    D               I+                Q++     I +P+ +    L + + HT+P I      PP      +P+P    F  FD  D   G     V +   IER+++ E+L + + T+     E             QL    Y A   +  E+ + E +   L   P     ++ Y   L+ L  +Q       LA    +LF   +D ++     + A+WF  HL+N  + +  W+ W   L      +   + P+  F+R VL    R +Y  ++K+ VP S  ++VP  P  +  Y    AA         P T    +LV      ++ + +P E  + L ++ NP    E  A  P      ++ +    L  +   +++H  A + K    F++L E++E Q+ ++    E+W   PQM+ + ++ +++  +V    V  WL   E+A  Y   G   ++    ID+  + V+
Sbjct:   24 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARYCLRFIADLVNCHVLAA---SSLLTLLETLVDSANE--DGVPHVRRDWFVFAVLSALPWVGRELYEKKESQLDHLLVTIEVFLNKR---SKKHWP--ALKVWSADSPHLQEEYLDCLWSQIKKL-------------KQDNWSEKHIPRPYLAFDSILCEALHHTLPAI----QPPPHNDTDTYPMP-RVIFRMFDYTDCPDGPVLPGVHS---IERFLIEEHLHNIIETYHLERKEC----------AAQLLCFPYKA--KIPLEYCIVEVIFAELFNLPKPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFM-RIDTMNVACFDRFANWFAYHLSNFQYRWS-WEDWEACL------QLDPEHPKPRFIREVLGKCLRLSYHQRIKDMVPESFASFVPPKPEPIYKYSMEGAAA-------LPGTEAAHQLV----VFVRNKCTPEEALNVLRDLPNPLKEGEQTANQPTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLIDKMLKTQIVECSAVATWLFSKEMA-PYFTHGCLWEMLHLTIDKMNKHVS 657          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_011551051.1 (PREDICTED: nuclear cap-binding protein subunit 1 [Plutella xylostella])

HSP 1 Score: 181.0 bits (458), Expect = 1.700e-41
Identity = 177/713 (24.82%), Postives = 317/713 (44.46%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALL--LWLLQRPG-RDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANP--------PAELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVAVYGELIKRA 782
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L+TF   +   +   A ++  +  +YATLVGLLNA++  FG + V          ++ G+W  A+  LRF+++LVN  V+ A    SL  LL TL+   NE  + VP  R+D +++ V+S LPWV   L ++    L  LL T   + ++R    KK      L+    D               I+                Q++     I +P+ +    L + ++HT+P I      PP     ++P+P    F  FD  D   G     V +   IER+++ E+L + +  +     E             QL    Y A   +  E+ + E +   L+ L RP   ++ Y   L+ L  +Q       LA    +LF   +D ++  +  +  +WF  HL+N  + +  W+ W   +      +   D P+  F+R  L    R +Y  ++K+ +P S  A+VP  P  +  Y    AA         P T    +LV      ++ + +P E  + + ++ NP         A+ A  +P  ++ +    L  +   +++H  A + K    F++L E++E Q+ ++    E+W   PQM+ + ++ +++  +V    V  WL   E++ +Y   G   ++    ID+  + V    + ++ A
Sbjct:   23 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLSTFRMKILRILTECAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKTGKWNAARYCLRFISDLVNCHVLAA---SSLLTLLETLVDCANE--DGVPQVRRDWFVFAVLSALPWVGRELYEKKESQLDHLLVTIEVFLNKR---SKKHWP--ALKVWSADSPHLQEEYLDCLWAQIKKL-------------RQDNWSEKHIPRPYLAFDSILCEALQHTLPTI----QPPPHNDGDSYPMP-RVIFRMFDYTDCPDGPVLPGVHS---IERFLIEEHLHNIIEAYHLERKEC----------AAQLLCFPYKA--KIPLEYCIVEVIFAELFNLPRPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFL-RIDTMNVASFDRFVNWFAYHLSNFQYRWS-WEDWEACI------QLDPDHPKPRFIRETLGKCLRLSYHQRIKDMMPESFAAFVPPKPEPIYKYSMEGAA-------SLPGTEAAHQLV----VCVRNKCTPEEALNVVRSLPNPLREGEAAASAQAAPHNPL-KIDVFVQTLLNLGSKSISHSAAAISKFHYVFKILAESEEAQICILRNVWELWQRHPQMVCVLVDKMLKTQIVECSAVATWLFSKEMS-QYFTHGYLWEILHLTIDKMNKHVTKLSKELQEA 666          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: OWR49725.1 (Nuclear cap-binding protein subunit 1 [Danaus plexippus plexippus])

HSP 1 Score: 180.3 bits (456), Expect = 2.800e-41
Identity = 183/710 (25.77%), Postives = 315/710 (44.37%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALL--LWLLQRPG-RDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAE---LAARDPY--WRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVAVYGELIKRA 782
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L+TF   +   +   A ++  +  +YATLVGLLNA++  FG + V          ++ G+W  A+  LRF+A+LVN  V+ A    SL  LL TL+   NE  + VP  R+D +++ V++ LPWV   L ++    L  LL T   + ++R    KK      L+    D               I+                Q++     I +P+ +    L + ++HT+P I      PP      +P+P    F  FD  D   G     +     IER+++ E+L + +  +     E             QL    Y +   +  E+ + E +   L+ L RP   ++ Y   L+ L  +Q       LA    +LF   +D ++     +L +WF  HL+N  + +  W+ W G  A+ + E      P+  F+R VL    R +Y  ++K+  P SL AYVP  P  +  Y    AA         P T    +LV      ++ + +P E  + L  + NP  E    AA   Y   ++ +    L  +   +++H  A + K    F++L E++E Q+ ++    E+W    QM+ + ++ +++  +V    V  WL   E+A  Y   G   ++    ID+  + V+   + ++ A
Sbjct:   24 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLSTFRVKILRILTECAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKTGKWNAARYCLRFIADLVNCHVLAA---SSLLTLLETLVDCANE--DGVPQVRRDWFVFAVLATLPWVGRELYEKKESQLDHLLVTIEVFLNKR---SKKHWP--ALKVWSADSPHLQEEYLDCLWAQIKKL-------------RQDNWSEKHIPRPYLAFDSILCEALQHTLPTI----QPPPHNDGDTYPMP-RVIFRMFDYTDCPDG---PVLPGAHSIERFLIEEHLHNIVEAYHLERKEC----------AAQLLCFPYKS--KIPLEYCIVEVIFAELFNLPRPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFM-RIDTMNIACFDRLVNWFSYHLSNFQYRWS-WEDWEG-CAQLDPEH-----PKPRFIREVLGKCLRLSYHQRIKDMTPESLAAYVPLKPEPIYKYAMEGAA-------SLPGTEAAHQLV----VCVRNKCTPEEALNVLRELPNPLREGEANAAHTAYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICVLRNVWELWQRHSQMVCVLVDKMLKTQIVECSAVATWLFSKEMA-PYFTHGYLWEILHLTIDKMNKHVSKLSKELQEA 665          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_021201108.1 (nuclear cap-binding protein subunit 1 [Helicoverpa armigera])

HSP 1 Score: 179.1 bits (453), Expect = 6.300e-41
Identity = 184/709 (25.95%), Postives = 314/709 (44.29%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALL--LWLLQRPG-RDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAE-----LAARDPY--WRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVA-VYGEL 778
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L+TF   +   +   A ++  +  +YATLVGLLNA++  FG + V          ++ G+W  A+  LRF+A+LVN  V+ A    SL  LL TL+   NE  + VP  R+D +++ V+S LPWV   L ++    L  LL T   + ++R    KK      L+    D               I+                Q++     I +P+ +    L + ++HT+P    P   PP      +P+P    F  FD  D   G     +     IER+++ E+L + L  +     E             QL    Y A   +  E+ + E +   L+ L RP   ++ Y   L+ L  +Q       LA    +LF   +D ++     +  +WF  HL+N  + +  W+ W      +   +   D P+  F+R VL    R +Y  ++KE VP S  A+VP  P  +  Y    AA         P T    +LV      ++ + +P E  + L  + NP  E      A   PY   ++ +    L  +   +++H  A + K    F++L E++E Q+ ++    E+W    QM+ + ++ +++  +V    V  WL   E+A  +  + L+ ++    ID+  + V+ + GEL
Sbjct:   24 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKTGKWNAARYCLRFIADLVNCHVLAA---SSLLTLLETLVDCANE--DGVPQVRRDWFVFAVLSALPWVGRELYEKKESQLDHLLTTIDIFLNKR---SKKHWP--ALKVWSSDTPHLQEEYLDCLWAQIKKL-------------KQDNWSEKHIPRPYLAFDSILCEALQHTLP----PIQPPPHNDTDTYPMP-RVIFRMFDYTDCPDG---PVLPGAHSIERFLIEEHLHNILEAYHLERKEC----------AAQLLCFPYKA--KIPLEYCIVEIIFAELFNLPRPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFM-RIDTMNVACFDRFVNWFSYHLSNFQYRWS-WEEW------EACTQLDIDHPKPRFIREVLGKCLRLSYQQRIKEMVPESFAAFVPLKPEPIYKYSMEGAA-------SLPGTEAAHQLV----VCVRNKCTPEEALNVLRELPNPLREGEQPAAAQAAPYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICILRNVWELWQRHTQMVCVLVDKMLKTQIVECNAVATWLFSKEMAPYFTHNYLW-EILHLTIDKMNKHVSKLSGEL 664          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_014357505.1 (PREDICTED: LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1 [Papilio machaon])

HSP 1 Score: 178.7 bits (452), Expect = 8.200e-41
Identity = 175/704 (24.86%), Postives = 311/704 (44.18%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRP---GRDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAE-LAARDPYW---RVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRYGRDGLYCDLFSDAIDRSLESVAVYGE 777
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L+TF   +   +   A ++  +  +YATLVGLLNA++  FG + V          ++ G+W  A+  LRF+++LVN  V+ A    SL  LL TL+   NE  + VP  R+D +++ V+S LPWV   L ++    L  LL T   + ++R    KK      L+    D               I+                Q++     I +P+ +    L + ++HT+P I      PP      +P+P    F  FD  D   G     +     IER+++ E+L + +  +     E             QL    Y A   +  E+ + E +   L   P     ++ Y   L+ L  +Q       LA    +LF   +D ++     +  +WF  HL+N  + +  W+ W G +      +   + P+  F+R VL    R +Y  +VK+ +P +L   VP  P  +  Y    AA         P T     LV      ++ + +P E  + L  + NP  +  AA  P++   ++ +    L  +   +++H  A + K    F++L E++E Q+ +++   E+W   PQM+ + ++ +++  +V    V  WL   ++A  +  + L+ ++    ID+  + V+   E
Sbjct:   24 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLSTFRVKILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKTGKWNPARYCLRFISDLVNCHVLAA---SSLLTLLETLVDAANE--DGVPQVRRDWFVFAVLSTLPWVGRELYEKKESQLDHLLVTIEVFLNKR---SKKHWP--ALKVWSADSPHLQEEYLDCLWAQIKKL-------------RQDNWSEKHIPRPYLAFDSILCEALQHTLPSI----QPPPHNEGDTYPMP-RVIFRMFDYTDCPDG---PVLPGAHSIERFLIEEHLHNIIEAYHLERKEC----------AAQLLCFPYKA--KIPLEYCIVEVMFAELFNLPVPRYLEICYGSILIELCKLQPSTMPQVLAQATEILFM-RIDTMNIACFDRFVNWFAYHLSNFQYRWS-WEDWEGCI------QLDPEHPKPRFIREVLGKCLRLSYHQRVKDMIPETLAPLVPLKPEPIYKYSMEGAA-------SLPGTEAAHRLV----VCVRNKCTPEEALNVLRELPNPLRDGDAAPHPHYNPLKIDVFVQTLLNLGSKSISHSFAAISKFHYVFKILAESEEAQICVLKNVWELWQRQPQMVCVLVDKMLKTQVVECSAVATWLFSKDMAPHFTHNYLW-EILHLTIDKMNKHVSKLSE 659          
BLAST of NO02G02180 vs. NCBI_GenBank
Match: XP_022905087.1 (nuclear cap-binding protein subunit 1 [Onthophagus taurus])

HSP 1 Score: 178.3 bits (451), Expect = 1.100e-40
Identity = 162/676 (23.96%), Postives = 298/676 (44.08%), Query Frame = 0
Query:   81 TKEDEIKAQMKALLVRVGDFHHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVYATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVNARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVWDALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEXXXXXXXXXXXXIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQGIRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAALGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPPDVATEHLVAEALLLWLLQRPG---RDLAYLHRLL-LQVVQTPKAAGSLALGLHLLFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEGGEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLAREAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPPAELAARDPY--WRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEHQLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRY 751
            ++  EI+ ++++L++RVG+      S SSLE N+EGLA  L  +L TF   +   +   A ++  +  +Y TLVGLLNA++  FG + V+         ++  +W  A+  LRFLA+LVN  V+ A+   SL +LL  ++   NE  + VP  R+D Y++ ++S LPWV   L ++    L  LL     + ++R    K      V  A +    E            ++      K                 I +P+ +    L + ++H++P I+     PP   +  +P+P    +  F +FD     +   +     IER+++ E+L   +  +     E               + +++     +  E+ + E +   L   P     D+AY   L+ L  +Q       LA    +LF   +D ++     +   WF  HL+N  F +  WD W   L      +   + P+  F+R V+  + R +Y  +++E +P +   +VP  P +   Y A+EAA         P T    +LV   R     + +P EV   L ++ NP +E  A   +   ++ +    L  +   + +H  A++ K    F++L E++E Q+ +++   E+W    QM+L+ ++ +++  +V    V  W+   E+   +
Sbjct:   25 SENQEIEDRLESLILRVGE-----KSSSSLESNLEGLASVLEADLGTFRQKILRILTDCAIRMPEKCTIYTTLVGLLNAKNYNFGGEFVEFMVRTFKDSLKACKWDGARYALRFLADLVNCHVLSAN---SLLQLLDNMIDAANE--DNVPQVRRDWYVFAILSTLPWVGRELYEKKESALERLLVQIEVFLNKRTK--KHHAALKVWTADVPHPQEEYLDCLWSQIRKLRADNWAEK----------------HIPRPYLAFDSILCEALQHSLPAIL----PPPHHESYTYPMP----WVVFRMFDYTDCPEGPILPGAHSIERFLIEEHLHSIIEMYHLERKECA------------AHLLNFPYKSKIPLEYCIVEVMFAELFNMPAPRYLDIAYGAILIELCKLQPSTMPQVLAQATEILFL-RIDTMNVSCFDRFVTWFSYHLSNFQFRWS-WDDWDSCL------DLDAEHPKPKFVREVMLKSLRLSYYQRLREILPDTFARFVPVKPEADYKY-AKEAA------AGLPGTSAAHQLVISIRQ----KCTPEEVLGVLKDLPNPRSEEEADSRFNPLKIDVFVQTLLNLGSKSFSHSFAVISKFHYVFKILAESEEAQICVLKNMFELWHNHQQMMLVLVDKMLKTQIVECSAVANWIFSKEMGAEF 633          
The following BLAST results are available for this feature:
BLAST of NO02G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30449.10.000e+077.25nuclear cap-binding protein subunit 1 [Nannochloro... [more]
XP_003287934.11.100e-4824.43hypothetical protein DICPUDRAFT_55124 [Dictyosteli... [more]
XP_646314.11.800e-4322.62initiation factor eIF-4 gamma middle domain-contai... [more]
KYR00264.14.000e-4323.91initiation factor eIF-4 gamma middle domain-contai... [more]
XP_004929717.11.500e-4225.64nuclear cap-binding protein subunit 1 [Bombyx mori... [more]
XP_011551051.11.700e-4124.82PREDICTED: nuclear cap-binding protein subunit 1 [... [more]
OWR49725.12.800e-4125.77Nuclear cap-binding protein subunit 1 [Danaus plex... [more]
XP_021201108.16.300e-4125.95nuclear cap-binding protein subunit 1 [Helicoverpa... [more]
XP_014357505.18.200e-4124.86PREDICTED: LOW QUALITY PROTEIN: nuclear cap-bindin... [more]
XP_022905087.11.100e-4023.96nuclear cap-binding protein subunit 1 [Onthophagus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006857NSK006857Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02180.1NO02G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667801gene_804Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100100g3gene224Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02180.1NO02G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02180 ID=NO02G02180|Name=NO02G02180|organism=Nannochloropsis oceanica|type=gene|length=2790bp
ATGAGCCACTACGGCGGCGGAAACTACGGACCACCGCAGGGAGGCGGAAG
AGGCGGGTATCAAGGAGGAGGCGGCGACCGCAAACGTTACCGTGGGGACG
ACTACCAGGGCGGCGGTGGAGGAGGTAGAGGTGGGCACTATGGCGGAAGT
GGGGGTGGTGGGCGCTATCGTAGCGGCGGTGGTGGACGGCACCAAGACCG
TCGAGGGGGAGACAGGGGCCCGCCGGCCAAGAAGCCCAAGACCAAGGAGG
ACGAGATCAAGGCGCAGATGAAAGCACTCTTGGTGCGTGTCGGGGACTTC
CATCACATAAGCACATCACTTTCGAGTCTGGAAGAGAACGTCGAGGGGTT
GGCGGGGGCGTTGGGGGACGAGCTGGCAACTTTTGGGGACTTTGTCGCTG
ACTTTGTCTTGACGGCTGCGGGACAATTGTCGTTACAAACCCCTGTGTAC
GCCACCCTGGTGGGGTTGCTTAATGCACGCGACGAGGAGTTCGGGGCAAA
GGTAGTTAAGGGCGGTGCGGTGCGGTTGGACGCGATGATTCGGCAGGGTC
GGTGGGTGAACGCCAAGCTGGTGTTGCGCTTTCTGGCCGAGTTGGTCAAC
GCGCGTGTGGTCAAGGCAGATGGAGAGGGAAGCCTAGGTGAGCTCCTGAC
AACGTTGCTGGGGCCTTTGAATGAGCCCGATGAAACTGTTCCGCCGGGGA
GGAAAGATTTGTACTTGTACTTGGTTGTCTCGGTGTTGCCGTGGGTGTGG
GATGCCTTGGCGAAGGAGTGGCCTGATGGATTACCTGCACTATTGGAGAC
GGCTTTTGCTTATGGGGATCGACGTGTGCCTTTGTTCAAAAAGCAGGGCG
TGCGTTGCGTGCTTGAGGCTGGCTTGGACGACGAGGATGAGGAGAAAGAT
GACGAGTCAGAGCCGGCGCAAGATTCGATTCAAACGGCTCTGGGGGTAGC
GAAGGCCCTGGCTGCCACCCTGGACGAAGCTCAAGAATCCATTGAAATCA
ACTCCATAGTCAAGCCGTGGAGGAGCGTCAAAGACGATCTCGCCCAAGGC
ATCCGACACACCATCCCCATCATCGTTCTGCCAGACCCTGACCCCCCCGC
CTTAGCCGCAGGCGCCTTCCCCCTCCCCCTCCACCCCTGCTTCGCGGAGT
TCGATCTTTTCGATGCAGAGAGCGGCGGACAAGCTGCCTCCGTTGCTGCC
CTCGGTGAAATCGAGCGCTGGGTCCTCCGAGAGTACCTCAAGGACAGCCT
TGTGACCTTCCGCCCATTTGTCAATGAAGCAGGGAACAAGCGAGGCTCCT
TTGTCGCTGAAGTCGAACAGCTTTATTCTATCTCTTACCTTGCCCCTCCC
GATGTTGCCACGGAGCACCTCGTTGCCGAGGCCTTGCTCCTGTGGCTGCT
GCAGCGTCCAGGACGTGACTTGGCGTACCTCCATCGGTTGTTGCTTCAAG
TGGTCCAGACGCCCAAGGCGGCCGGCTCCTTGGCATTAGGGCTGCATTTA
TTGTTTCAAGACAATTTGGACGTGCTAGATCACGGGGCAATCGTGCAGCT
GGCGGATTGGTTTGGCGCCCACTTAACCAACACCTCGTTTGTCTTCCCCT
ACTGGGATGCGTGGGCGGGGCTGCTTGCGGAGCAGGAGGGGGAGGAGGGA
GGGGAAGATAGCCCACAGCAGTTTTTCTTGAGACGGGTGTTGGACGTGGC
AGCGAGGCAGACTTATGTGGCAAAGGTGAAGGAGCACGTCCCTTCCTCCC
TGCATGCGTATGTGCCCGGGGACCCTTACTCCCTGTCACCGTACCTCGCG
CGTGAGGCGGCGGTGGAGGAGAACGTGGAGACAGATTCGCCCCCGACTCG
TATCTTGAAGGAGCTGGTACGTCACTTTCGGGCTGTGCTACAGGGAGAGA
TCTCTCCGAGCGAGGTACAAGACTGGCTCGATAATGTCGCCAATCCTCCT
GCAGAGCTTGCGGCGAGGGATCCGTATTGGAGAGTGACGTTGGTGACGCA
TGCCTTGTCGAGGATTAGCGACGACACGGTGGCACACTTGCCGGCGTTGC
TTGAAAAGTGCTTGGGCTGGTTCAGGGTATTGTTTGAAGCGGACGAGCAC
CAGCTTAGGATGGTGGAGGCCTTTTCGGAGGTTTGGGTTGGGTCGCCACA
GATGTTGCTGTTGGCGTTGAATGCCGTGATGAGGATGCATATGGTGTTGC
CGGTTAATGTCATGGGGTGGTTGGTGAGACCGGAGGTGGCAAGGAGGTAT
GGCAGGGATGGGTTGTACTGTGATTTGTTTTCGGACGCCATCGACAGGTC
TTTGGAATCGGTCGCCGTGTACGGTGAGTTGATTAAGAGGGCATTGGGAC
CTCATCCACCTGTGGCTGAACAGGGTGAGGAGGCACGGGCGAGGCAATTG
GCGGGGGAGGAGACGATGGAGCATGGAGTGGTGGCAGTTGAAAATGCGCA
GGATTTGGTTTTGGAGCTGGTGGAGGGGTTATGCAAGGTCTTGGCAGAGG
GGTTGGGATCGGAGGAGGAAAAGGGAAAGGAGTGGGTGAGGGCGGGATTG
AGTTATTTGAGGGGGAGTTTGCAGACGTTTTTGAAGTTGGAGGAGAAGGG
GGTGAATAGGGCGATTCCCGGGACGGAGGCTGTCTTTGACATGGAGAAGG
TGGAGGAGGCGGTGGGGGATCTGGAGGCGGTGCCCGCTGCGTTGCAGGAA
GTGCTGAAGGATTCACGGAGATATGTGGAGGAGAGGCAGGTTTTGGGGGG
AGGATTTTCTCATGGGCAGGTGTTCACTGATGAGGAGTAA
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protein sequence of NO02G02180.1

>NO02G02180.1-protein ID=NO02G02180.1-protein|Name=NO02G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=930bp
MSHYGGGNYGPPQGGGRGGYQGGGGDRKRYRGDDYQGGGGGGRGGHYGGS
GGGGRYRSGGGGRHQDRRGGDRGPPAKKPKTKEDEIKAQMKALLVRVGDF
HHISTSLSSLEENVEGLAGALGDELATFGDFVADFVLTAAGQLSLQTPVY
ATLVGLLNARDEEFGAKVVKGGAVRLDAMIRQGRWVNAKLVLRFLAELVN
ARVVKADGEGSLGELLTTLLGPLNEPDETVPPGRKDLYLYLVVSVLPWVW
DALAKEWPDGLPALLETAFAYGDRRVPLFKKQGVRCVLEAGLDDEDEEKD
DESEPAQDSIQTALGVAKALAATLDEAQESIEINSIVKPWRSVKDDLAQG
IRHTIPIIVLPDPDPPALAAGAFPLPLHPCFAEFDLFDAESGGQAASVAA
LGEIERWVLREYLKDSLVTFRPFVNEAGNKRGSFVAEVEQLYSISYLAPP
DVATEHLVAEALLLWLLQRPGRDLAYLHRLLLQVVQTPKAAGSLALGLHL
LFQDNLDVLDHGAIVQLADWFGAHLTNTSFVFPYWDAWAGLLAEQEGEEG
GEDSPQQFFLRRVLDVAARQTYVAKVKEHVPSSLHAYVPGDPYSLSPYLA
REAAVEENVETDSPPTRILKELVRHFRAVLQGEISPSEVQDWLDNVANPP
AELAARDPYWRVTLVTHALSRISDDTVAHLPALLEKCLGWFRVLFEADEH
QLRMVEAFSEVWVGSPQMLLLALNAVMRMHMVLPVNVMGWLVRPEVARRY
GRDGLYCDLFSDAIDRSLESVAVYGELIKRALGPHPPVAEQGEEARARQL
AGEETMEHGVVAVENAQDLVLELVEGLCKVLAEGLGSEEEKGKEWVRAGL
SYLRGSLQTFLKLEEKGVNRAIPGTEAVFDMEKVEEAVGDLEAVPAALQE
VLKDSRRYVEERQVLGGGFSHGQVFTDEE*
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Synonyms
Publications