NO02G02150, NO02G02150 (gene) Nannochloropsis oceanica

Overview
NameNO02G02150
Unique NameNO02G02150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length426
Alignment locationchr2:604597..605022 -

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Properties
Property NameValue
DescriptionMitochondrial import inner membrane translocase subunit tim16
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:604597..605022 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005341Tim16
Homology
BLAST of NO02G02150 vs. NCBI_GenBank
Match: EWM30512.1 (mitochondrial import inner membrane translocase subunit tim16 [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 5.800e-55
Identity = 117/137 (85.40%), Postives = 128/137 (93.43%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVG 138
            MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTD+K+ AR+IEQFDKYF QNEPGKGGSFYLQSKVYRAKECLE+AI+ E+ KA KA++EA++AR+ N  K G
Sbjct:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: CBJ31171.1 (Mitochondrial import inner membrane translocase subunit TIM16 homolog [Ectocarpus siliculosus])

HSP 1 Score: 102.1 bits (253), Expect = 1.500e-18
Identity = 57/111 (51.35%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAI 112
            M+ PF R++  +AV SA + SRAFV+AY QA+ NA+ G   +AKA SRT   ++  EA+++LNLQK +MK P  + +++D+YF  N+P KGGSFYLQSKV+RAKE L++ +
Sbjct:    1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEMK-PDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQL 109          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: GAY02765.1 (Hypothetical protein PINS_010601 [Pythium insidiosum])

HSP 1 Score: 96.7 bits (239), Expect = 6.300e-17
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTA--AKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGK 118
            MSGP  R++  + VM A + SRAFV AY QA+ NAK G   A  AK A +    M   +AL++LN   +       + +QF +YF  N+P KGGSFYLQSK++RAKE LE+  EEE  K
Sbjct:    1 MSGPLGRVIAQVIVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTAKTAIKRKNVMPRTQALEILNFPTSATPTTEXVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALERKDEEEPAK 119          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: GBG25289.1 (Mitochondrial import inner membrane translocase subunit tim16 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 96.3 bits (238), Expect = 8.200e-17
Identity = 62/130 (47.69%), Postives = 73/130 (56.15%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAEADDARK 131
            MSGP VR+ V + V    V SRAFV AY QA  N       AA A       M  DEALKVLN   T  KN   + E++++YF  N+P KGGSFYLQSK +RAKE +EK + EE    A   AE  D  K
Sbjct:    1 MSGPIVRLFVQVFVAGVGVVSRAFVQAYQQAAANPNAAKAAAANAKRSLRKEMKLDEALKVLNFDSTP-KNLPEVTERYEQYFNANDPKKGGSFYLQSKFHRAKEVVEKQLAEEAAAKAGKPAEKSDESK 129          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: GAX11740.1 (hypothetical protein FisN_7Lh121 [Fistulifera solaris])

HSP 1 Score: 92.0 bits (227), Expect = 1.500e-15
Identity = 54/115 (46.96%), Postives = 77/115 (66.96%), Query Frame = 0
Query:    3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNE--PGKGGSFYLQSKVYRAKECLEKAIEEER 116
            GP  R++  + V + +V  RA  AAY QAL NAK+GG TAA+A +R    M+ +EAL++LNL + +      + +QF+KY   NE   G GGSFYLQSKVYRAKE L++ ++E++
Sbjct:    4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFVDEKK 116          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: GAX20808.1 (hypothetical protein FisN_7Hh121 [Fistulifera solaris])

HSP 1 Score: 90.5 bits (223), Expect = 4.500e-15
Identity = 58/124 (46.77%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    3 GPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNE--PGKGGSFYLQSKVYRAKECLEKAIEEER-GKAAKAKA 124
            GP  R++  + V + +V  RA  AAY QAL NAK+GG TAA+A +R    M+ +EAL++LNL + +      + +QF+KY   NE   G GGSFYLQSKVYRAKE L++ I+E++  +  KAK+
Sbjct:    4 GPLARIIAQVIVPAIAVLVRALPAAYAQALGNAKKGGVTAAQAVTRK--AMSKEEALQILNLHQEEKLTAEAIQKQFEKYMSANEVKRGGGGSFYLQSKVYRAKELLDEFIDEKKEEQQTKAKS 125          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_008864536.1 (hypothetical protein H310_02717 [Aphanomyces invadans] >ETW06461.1 hypothetical protein H310_02717 [Aphanomyces invadans])

HSP 1 Score: 88.2 bits (217), Expect = 2.200e-14
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGK--GGSFYLQSKVYRAKECLEK 110
            MSG   R++ NI V  A V S+AFV AY QA+ NAK  G T   A       M+ ++AL+VLNLQ   + + A + +QFD+YF  NEP K  GGS+YLQSK+YRAKE L K
Sbjct:    1 MSGQIARLIANIVVAGAGVVSKAFVQAYQQAVVNAK-NGKTVETATVSLKNKMSKEQALEVLNLQ--GVPSIADIEKQFDRYFKANEPSKDGGGSYYLQSKIYRAKEALLK 108          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_024583480.1 (mitochondrial import inner membrane translocase subunit tim16 [Plasmopara halstedii] >CEG47111.1 mitochondrial import inner membrane translocase subunit tim16 [Plasmopara halstedii])

HSP 1 Score: 87.8 bits (216), Expect = 2.900e-14
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKA-ASRTYGGMAPDEALKVLNLQKTDMKNPARLIE----QFDKYFMQNEPGKGGSFYLQSKVYRAKECLEK 110
            MSGP  R++  + VM A + S+AFV AY QA+QNA+ G   A K  A      M+  +A ++LN     +  PA  +E    QF +YF  N+P KGGSFY+QSK+YRAKE LE+
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVHAYQQAVQNARSGNAAAMKTKAVVRKNQMSTQQAREILNF---PVSGPAPSLEDVQRQFKRYFEANDPAKGGSFYIQSKIYRAKEALER 111          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: POM71382.1 (TIM23 translocase complex subunit Tim16 (predicted) [Phytophthora palmivora var. palmivora])

HSP 1 Score: 87.8 bits (216), Expect = 2.900e-14
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIE-QFDKYFMQNEPGKGGSFYLQSKVYRAKECLE-KAIEEERGKAAKAK 123
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M+  +AL++LN   + +   +  I+ QF +YF  N+P KGGSFYLQSK++RAKE LE K  +EE   + +AK
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRK-NQMSKQQALEILNFPTSGVAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKDPDEETPSSDQAK 125          
BLAST of NO02G02150 vs. NCBI_GenBank
Match: XP_009531597.1 (hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae] >EGZ14168.1 hypothetical protein PHYSODRAFT_562549 [Phytophthora sojae])

HSP 1 Score: 87.0 bits (214), Expect = 5.000e-14
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 0
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQG--GGTAAKAASRTYGGMAPDEALKVLNLQKT-DMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAE 125
            MSGP  R++  + VM A + S+AFV AY QA+ NA+ G  G  AAK   R    M+  +A ++LN   +  + +   + +QF +YF  N+P KGGSFYLQSK++RAKE LE+   +E   A+ A  E
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARTGNTGAMAAKTVVRK-NQMSKQQAREILNFPTSGPVPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALERKDPDEEAPASDAAKE 126          
The following BLAST results are available for this feature:
BLAST of NO02G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30512.15.800e-5585.40mitochondrial import inner membrane translocase su... [more]
CBJ31171.11.500e-1851.35Mitochondrial import inner membrane translocase su... [more]
GAY02765.16.300e-1747.06Hypothetical protein PINS_010601 [Pythium insidios... [more]
GBG25289.18.200e-1747.69Mitochondrial import inner membrane translocase su... [more]
GAX11740.11.500e-1546.96hypothetical protein FisN_7Lh121 [Fistulifera sola... [more]
GAX20808.14.500e-1546.77hypothetical protein FisN_7Hh121 [Fistulifera sola... [more]
XP_008864536.12.200e-1450.45hypothetical protein H310_02717 [Aphanomyces invad... [more]
XP_024583480.12.900e-1445.61mitochondrial import inner membrane translocase su... [more]
POM71382.12.900e-1445.24TIM23 translocase complex subunit Tim16 (predicted... [more]
XP_009531597.15.000e-1442.52hypothetical protein PHYSODRAFT_562549 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02150.1NO02G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
TIM16gene197Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02150.1NO02G02150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02150 ID=NO02G02150|Name=NO02G02150|organism=Nannochloropsis oceanica|type=gene|length=426bp
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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protein sequence of NO02G02150.1

>NO02G02150.1-protein ID=NO02G02150.1-protein|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY
GGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKV
YRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVGGKSP*
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Synonyms
Publications