NO02G02150.1, NO02G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02150.1
Unique NameNO02G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length426
Alignment locationchr2:604597..605022 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:604597..605022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02150.1 vs.
Match: EWM30512.1 (mitochondrial import inner membrane translocase subunit tim16 [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 5.800e-55
Identity = 117/137 (85.40%), Postives = 128/137 (93.43%), Query Frame = 0 
Query:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKVYRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVG 138
            MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTD+K+ AR+IEQFDKYF QNEPGKGGSFYLQSKVYRAKECLE+AI+ E+ KA KA++EA++AR+ N  K G
Sbjct:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLERAIKAEKAKAGKARSEAEEARRENAQKRG 137
The following BLAST results are available for this feature:
BLAST of NO02G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30512.15.800e-5585.40mitochondrial import inner membrane translocase su... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02150NO02G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02150.1NO02G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02150.1.cds1NO02G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02150.1 ID=NO02G02150.1|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=426bp
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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protein sequence of NO02G02150.1

>NO02G02150.1-protein ID=NO02G02150.1-protein|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTY
GGMAPDEALKVLNLQKTDMKNPARLIEQFDKYFMQNEPGKGGSFYLQSKV
YRAKECLEKAIEEERGKAAKAKAEADDARKANKSKVGGKSP*
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mRNA from alignment at chr2:604597..605022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02150.1 ID=NO02G02150.1|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=426bp|location=Sequence derived from alignment at chr2:604597..605022- (Nannochloropsis oceanica)
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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Coding sequence (CDS) from alignment at chr2:604597..605022-

>NO02G02150.1 ID=NO02G02150.1|Name=NO02G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr2:604597..605022- (Nannochloropsis oceanica)
ATGAGCGGTCCTTTTGTACGGATGCTAGTCAACATCGCCGTCATGTCTGC
ATCCGTCTTTTCCCGTGCATTTGTGGCAGCATATCATCAGGCCTTGCAAA
ATGCCAAGCAAGGTGGGGGCACGGCCGCCAAGGCCGCCTCCCGGACTTAT
GGAGGGATGGCCCCGGACGAAGCCCTCAAGGTCCTGAATTTGCAAAAGAC
AGATATGAAAAACCCAGCACGATTGATCGAGCAATTTGACAAGTACTTTA
TGCAGAATGAGCCGGGTAAGGGGGGATCGTTTTATTTGCAGTCAAAGGTG
TATCGGGCGAAAGAGTGCTTGGAGAAGGCGATCGAGGAAGAGCGGGGGAA
GGCCGCCAAGGCCAAAGCGGAAGCAGATGATGCCCGGAAAGCAAACAAAA
GTAAAGTGGGAGGGAAGTCACCATGA
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Synonyms
Publications