NO02G02130, NO02G02130 (gene) Nannochloropsis oceanica

Overview
NameNO02G02130
Unique NameNO02G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1706
Alignment locationchr2:602630..604335 +

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Properties
Property NameValue
DescriptionPDZ domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:602630..604335 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ
Homology
BLAST of NO02G02130 vs. NCBI_GenBank
Match: EWM30514.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 4.900e-63
Identity = 129/150 (86.00%), Postives = 135/150 (90.00%), Query Frame = 0
Query:   54 GSSEFNKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFSTPAXXXXXXXVKPDEATLLKQLEAEEKGKKKFFGLF 204
            G SEFNKNRAARKPGP+DLVVELQKPLGIVLEEDEKGNVYVKELSPAGNA RSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGN+VKIVLER+ K APKK++F  PA        KPDEATLL+QLE EEKGKKKFFGLF
Sbjct:   54 GMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERS-KAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: CBN78057.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 126.7 bits (317), Expect = 8.200e-26
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 0
Query:   59 NKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFSTPAXXXXXXXVKPDEA----TLLKQLEAEEKGKKK--FFGLF 204
            N  RAARK GP D VVEL+KP+G+VLEEDE+GNVY+ E+ P  NA+R  ++  GD +T +SATFG+E WSA+G GL  +  AI++R G +VK+VLE +K+   +K M    A        K  E      LL++L  + K +KK  ++GLF
Sbjct:   70 NMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYIVEIVPGSNASRKKQINVGDKITFVSATFGEEIWSAQGVGLSRVQSAIRIRSGPTVKLVLETSKEA--EKKMARDSARLKRLQDAKETEEDKRDRLLRELSDDTKVQKKKPWYGLF 218          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: GAX15276.1 (hypothetical protein FisN_1Hh713 [Fistulifera solaris])

HSP 1 Score: 124.8 bits (312), Expect = 3.100e-25
Identity = 73/148 (49.32%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLER----AKKVAPKKNMFSTPAXXXXXXXVKPDEATLLKQLEAEEK--GKKKFFGLF 204
            RA+R     D VVEL +PLG++L+EDE+ NVYV+ L+P GNAARSGKV++GD+VTM SATFG+E WS RG GL  ++ AI++R G++V +V E      KK A                  K D  +LLK+LE +EK    KKFFGLF
Sbjct:   43 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIVTMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD--SLLKELENDEKKLNPKKFFGLF 188          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: GAX26460.1 (hypothetical protein FisN_1Lh713 [Fistulifera solaris])

HSP 1 Score: 123.2 bits (308), Expect = 9.000e-25
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLER----AKKVAPKKNMFSTPAXXXXXXXVKPDEATLLKQLEAEEK--GKKKFFGLF 204
            RA+R     D VVEL +PLG++L+EDE+ NVYV+ L+P GNAARSGKV++GD++TM SATFG+E WS RG GL  ++ AI++R G++V +V E      KK A                  K D  +LL++LE +EK    KKFFGLF
Sbjct:   45 RASRSAQDGDNVVELVRPLGLILKEDEQRNVYVETLAPKGNAARSGKVKEGDIITMCSATFGNEMWSTRGVGLSRVLAAIRLRAGSTVSLVFETPGEYKKKQALTNKEIQQREEAARAAQAKKD--SLLRELENDEKKLNPKKFFGLF 190          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: XP_002178450.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50115.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.1 bits (305), Expect = 2.000e-24
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFS--TPAXXXXXXXVKPDEATLLKQLEAEEKGKK---KFFGLF 204
            RA+R     D VVEL +PLG+VL EDE+GNVYV+ ++P GNAAR+GK+++GD+VTM SATFGD+ WS RG GL  ++ AI+VR G  VK+V+E   K        +             +  + +LL +LE +EK  K   KFFGLF
Sbjct:   57 RASRSAQSEDNVVELLRPLGLVLNEDEQGNVYVETVAPKGNAARAGKIKEGDIVTMCSATFGDDMWSTRGVGLTRVLAAIRVRAGAKVKLVVESPAKXXXXXXXXTKQIQVREEAQKAAQRKKDSLLAELEQDEKKLKKGGKFFGLF 203          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: OEU16172.1 (hypothetical protein FRACYDRAFT_268904 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 121.7 bits (304), Expect = 2.600e-24
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFST----PAXXXXXXXVKPDEATLLKQLEAEEK--GKKKFFGLF 204
            R++R  G  D VVELQKPLG+VL +D+ GNVYV+ ++  GNAAR+GKV++GD+VTM+SATFGD+ WS RG GL  ++ AI+VR G  V +V E   +   KK   ST     A        +  + TLL +LE +E    K KF GLF
Sbjct:   66 RSSRSAGNDDEVVELQKPLGLVLNQDDAGNVYVETVAARGNAARTGKVKEGDIVTMVSATFGDQMWSTRGVGLTRVLTAIRVRTGPRVSLVFESQNQY--KKKAASTSKQQQAMKDAREAAQAKKDTLLSELEQDETKLKKGKFLGLF 211          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: XP_002292782.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89978.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.9 bits (302), Expect = 4.500e-24
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERA--KKVAPKKNMFSTPAXXXXXXXVKPDEATLLKQLEAEEK--GKKKFFGLF 204
            + AR     D +VEL++PLG+VL+ED+ GNV+V+ ++P GNAARSG+V++GD+VTM SATFGD+ WS RGAGL  ++ AI+VR G +V +V E    +KV   +      A        +     LL +LEA+E+   K KF GLF
Sbjct:   52 KQARSASATDNLVELKRPLGLVLDEDDNGNVFVQTVAPRGNAARSGQVKEGDIVTMCSATFGDQMWSTRGAGLTRVLAAIRVRAGPTVSLVFESTTQRKVKGAEVAKQAAAAKEAKERAQKKRDELLSELEADERKLKKGKFLGLF 197          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: EJK62405.1 (hypothetical protein THAOC_16985 [Thalassiosira oceanica])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 0
Query:   62 RAARKPGPMDLVVELQKPLGIVLEEDE-KGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFS--TPAXXXXXXXVKPDEATLLKQLEAEEKGKKK 199
            R +R     D +VEL++PLG++L+EDE  GNVYV+ ++P GNAAR+G+V++GD++TM SATFGD+ WS RG GL  ++ AI+VR G +V +VLE   +    +   +    A        +  +  LL +LE +EK  KK
Sbjct:   54 RQSRSASTGDNMVELKRPLGLILKEDEDTGNVYVETVAPRGNAARTGQVKEGDIITMCSATFGDQMWSCRGVGLTRVLAAIRVRAGPTVSLVLESPNQTKATRGEIAKQAAAAREAKERAQKKKDLLLSELENDEKKLKK 193          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: CEM04295.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 107.5 bits (267), Expect = 5.100e-20
Identity = 63/148 (42.57%), Postives = 89/148 (60.14%), Query Frame = 0
Query:   59 NKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFSTPAXXXXXXXVKPDEATLLKQLEAEE---KGKKKFFGLF 204
            N+ R  R  G   +++ELQKPLGI   +DE GNVYV++L+P GNA +SG ++ G+ + M+SA +GDE WS +G+G+ M+  AI+ R    V++V       A  K   + PA           +A LLK+L+AEE   K  KKFFGLF
Sbjct:   59 NRAREQRTVGQNQMMIELQKPLGIEWNQDEFGNVYVRKLTPGGNADQSGAIKPGNQLLMVSAAWGDEMWSTKGSGVNMVETAIRNRAQPPVRLVF------ATPKGQTTGPAVAK-----TKSDAELLKELQAEEDERKKDKKFFGLF 195          
BLAST of NO02G02130 vs. NCBI_GenBank
Match: XP_005717244.1 (unnamed protein product [Chondrus crispus] >CDF37425.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 105.5 bits (262), Expect = 1.900e-19
Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = 0
Query:   60 KNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFSTPA 171
            K+RA R     D  V +QKPLG+VLEE + G V+V E+ P GNAA SG++ +GD++  +SATFG+E WS RG GL  +M++I++R G+ V +V+E  + ++ +K+M +  A
Sbjct:   65 KDRAKRMVDSSDRSVTVQKPLGLVLEEGQDGMVFVAEMDPEGNAADSGEINEGDILVAVSATFGEEVWSTRGVGLDRVMKSIRIRAGDFVTLVVESPETLSERKSMAAVQA 175          
The following BLAST results are available for this feature:
BLAST of NO02G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30514.14.900e-6386.00PDZ domain protein [Nannochloropsis gaditana][more]
CBN78057.18.200e-2646.36conserved unknown protein [Ectocarpus siliculosus][more]
GAX15276.13.100e-2549.32hypothetical protein FisN_1Hh713 [Fistulifera sola... [more]
GAX26460.19.000e-2547.97hypothetical protein FisN_1Lh713 [Fistulifera sola... [more]
XP_002178450.12.000e-2446.94predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU16172.12.600e-2447.97hypothetical protein FRACYDRAFT_268904 [Fragilario... [more]
XP_002292782.14.500e-2445.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK62405.11.000e-2042.86hypothetical protein THAOC_16985 [Thalassiosira oc... [more]
CEM04295.15.100e-2042.57unnamed protein product [Vitrella brassicaformis C... [more]
XP_005717244.11.900e-1945.05unnamed protein product [Chondrus crispus] >CDF374... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006822NSK006822Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02130.1NO02G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574183gene_799Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g8gene198Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02130.1NO02G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02130 ID=NO02G02130|Name=NO02G02130|organism=Nannochloropsis oceanica|type=gene|length=1706bp
TTCGCGCAAAGGAGCCTCTCTTGAAGAAAAAACTGGGCACCTGCATCCCA
TTCTGACAATGCCGCTCTGATGAGTTGATTCTTGTGCGGTCGTAACCTTT
GCTTTCAGCCTGACAATCTGGCCTTCGCCCGGCAAATGTTACGGGTACTT
GTGAAGGCACACGGTCAACCAAGGGAGCGGGACAGGAGGTTTAATGTGCC
CCACCGCTCTGGCTCGCACTCCATACGACACATGTCGTTCTCTGCGTCTG
ACCTGGTGTTGACTGCATGACAATGAGAGCGCGCCCTAGACTGCATCAGC
TCTGACCCGTCCCCACCCACCACCCACGTCGACACTCGCACAGCCACTGT
CCCAGCGCCTAGCTATTAGTCATGAAGCTCTCCAGTGCCACCGTCATCTT
GGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCTTCCCGTCCCGG
GCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAAGAACCTATCGg
tgcgtcctaattttgagcgtcgacgtagactaaagtgacgcatgtctcaa
cctggttgcacgaaatcctcatgacgtctccccttccattactatttctc
cctaccagACCCAAGACAACGACAACTTTCGCGTCCGGGGGCAGCAGCGA
GTTTAACAAGAACCGGGCGGCCCGCAAGCCTGGTCCCATGGATCTCGTAG
TGGAATTGCAGAAGCCTCTTGGAATTGTCCTGGAGGAGGACGAGAAGGGG
AACGTCTACGTGAAGGAGCTTTCCCCCGCCGGAAACGCTGCGCGGgtacg
taattcttttaccaaaaatcgcccgaattaatattgtattaaaacatgtt
cacacctctcatccatccctccactcatgtctcccgtgttctttcaccgt
cgccccccccccacatagTCGGGCAAGGTCGAGAAGGGTGACCTGGTGAC
GATGATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGCGCGGGGGGCTG
GATTAGGGATGATTATGCAGGCCATCAAGGTTCGACAGGGGAATTCAGTG
AAGATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAGAAGAACATGTT
CAGTACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAAGCCGGATGAGG
CGACATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGAAGAAGAAATTT
TTCGGACTGTTTTAAAGTGAATGGAAAACAAGGGAAACGCGAGGTGTAAT
TTGATCCCTTGTGTGAAGTAAGTAAGCAGTGTGAGTGACGAGCGAGGCCG
AGCTAGTATATTTGGTGTCTGTGTGTATCTCTGTGTGTTCGTCACATTCG
TTTTTACTGTTACTGTGTCGTCCTCCTCACAAAGTGTGCGCGTGGTACTT
GTCCCCTCTTCCTTTTCATCCCTCCTGCTTTGCCAAGGGGGAGAGGGAGA
TCGCGGCAGTAGAGGAGACAAACCGCATAAACTAAATCAAGACCGTTCGT
TCTAGTTTATAATATTGTTTTTTTGGAACAGAGGAGGGACGCAAATGGAG
AGGAGATAGGCTCGTGCAACACACACAGAAAGTGCACAGCCACACACGTG
CGCGAATGATACGCTGCACGCACTCTGCGCGCGTTGAGGAAAAAGAGAAA
GAACGAAACAAACAAAATGGTAACAAGTGATTTGACACGATTGTCTCTCT
CTCTCT
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protein sequence of NO02G02130.1

>NO02G02130.1-protein ID=NO02G02130.1-protein|Name=NO02G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MKLSSATVILAAALLSLTSAFVLPVPGSSSSSSSSTSISRTYRPKTTTTF
ASGGSSEFNKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPA
GNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVK
IVLERAKKVAPKKNMFSTPAPKPKPAPVKPDEATLLKQLEAEEKGKKKFF
GLF*
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Synonyms
Publications