NO02G02130.1, NO02G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02130.1
Unique NameNO02G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1474
Alignment locationchr2:602630..604335 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:602630..604335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02130.1 vs.
Match: EWM30514.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 278.9 bits (712), Expect = 1.300e-71
Identity = 152/198 (76.77%), Postives = 172/198 (86.87%), Query Frame = 0 
Query:    6 ATVILAAALLSLTSAFVLPVPGSSSSSSSSTSISRTYRPKTTTTFASGGSSEFNKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVKIVLERAKKVAPKKNMFSTPAPKPKPAPVKPDEATLLKQLEAEEKGKKKFFGLF 204
            A +++AAA + LTSAFV P   ++S +++   +SR++   + TT  +GG SEFNKNRAARKPGP+DLVVELQKPLGIVLEEDEKGNVYVKELSPAGNA RSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGN+VKIVLER+ K APKK++F  PAPK KPAP KPDEATLL+QLE EEKGKKKFFGLF
Sbjct:    7 AVMVVAAAFVGLTSAFVTPSLSTASRATTGV-VSRSHSTPSRTTMMAGGMSEFNKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERS-KAAPKKSVFKAPAPKAKPAPKKPDEATLLRQLEDEEKGKKKFFGLF 202
The following BLAST results are available for this feature:
BLAST of NO02G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30514.11.300e-7176.77PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02130NO02G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02130.1NO02G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02130.1.cds1NO02G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02130.1.cds2NO02G02130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02130.1.cds3NO02G02130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02130.1 ID=NO02G02130.1|Name=NO02G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
TTCGCGCAAAGGAGCCTCTCTTGAAGAAAAAACTGGGCACCTGCATCCCA
TTCTGACAATGCCGCTCTGATGAGTTGATTCTTGTGCGGTCGTAACCTTT
GCTTTCAGCCTGACAATCTGGCCTTCGCCCGGCAAATGTTACGGGTACTT
GTGAAGGCACACGGTCAACCAAGGGAGCGGGACAGGAGGTTTAATGTGCC
CCACCGCTCTGGCTCGCACTCCATACGACACATGTCGTTCTCTGCGTCTG
ACCTGGTGTTGACTGCATGACAATGAGAGCGCGCCCTAGACTGCATCAGC
TCTGACCCGTCCCCACCCACCACCCACGTCGACACTCGCACAGCCACTGT
CCCAGCGCCTAGCTATTAGTCATGAAGCTCTCCAGTGCCACCGTCATCTT
GGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCTTCCCGTCCCGG
GCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAAGAACCTATCGA
CCCAAGACAACGACAACTTTCGCGTCCGGGGGCAGCAGCGAGTTTAACAA
GAACCGGGCGGCCCGCAAGCCTGGTCCCATGGATCTCGTAGTGGAATTGC
AGAAGCCTCTTGGAATTGTCCTGGAGGAGGACGAGAAGGGGAACGTCTAC
GTGAAGGAGCTTTCCCCCGCCGGAAACGCTGCGCGGTCGGGCAAGGTCGA
GAAGGGTGACCTGGTGACGATGATTAGCGCCACATTTGGGGACGAGTGCT
GGAGCGCGCGGGGGGCTGGATTAGGGATGATTATGCAGGCCATCAAGGTT
CGACAGGGGAATTCAGTGAAGATCGTGTTGGAGCGAGCGAAGAAGGTGGC
GCCCAAGAAGAACATGTTCAGTACCCCAGCCCCGAAGCCCAAGCCAGCAC
CAGTGAAGCCGGATGAGGCGACATTGCTGAAACAATTGGAGGCGGAGGAG
AAGGGGAAGAAGAAATTTTTCGGACTGTTTTAAAGTGAATGGAAAACAAG
GGAAACGCGAGGTGTAATTTGATCCCTTGTGTGAAGTAAGTAAGCAGTGT
GAGTGACGAGCGAGGCCGAGCTAGTATATTTGGTGTCTGTGTGTATCTCT
GTGTGTTCGTCACATTCGTTTTTACTGTTACTGTGTCGTCCTCCTCACAA
AGTGTGCGCGTGGTACTTGTCCCCTCTTCCTTTTCATCCCTCCTGCTTTG
CCAAGGGGGAGAGGGAGATCGCGGCAGTAGAGGAGACAAACCGCATAAAC
TAAATCAAGACCGTTCGTTCTAGTTTATAATATTGTTTTTTTGGAACAGA
GGAGGGACGCAAATGGAGAGGAGATAGGCTCGTGCAACACACACAGAAAG
TGCACAGCCACACACGTGCGCGAATGATACGCTGCACGCACTCTGCGCGC
GTTGAGGAAAAAGAGAAAGAACGAAACAAACAAAATGGTAACAAGTGATT
TGACACGATTGTCTCTCTCTCTCT
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protein sequence of NO02G02130.1

>NO02G02130.1-protein ID=NO02G02130.1-protein|Name=NO02G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MKLSSATVILAAALLSLTSAFVLPVPGSSSSSSSSTSISRTYRPKTTTTF
ASGGSSEFNKNRAARKPGPMDLVVELQKPLGIVLEEDEKGNVYVKELSPA
GNAARSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNSVK
IVLERAKKVAPKKNMFSTPAPKPKPAPVKPDEATLLKQLEAEEKGKKKFF
GLF*
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mRNA from alignment at chr2:602630..604335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02130.1 ID=NO02G02130.1|Name=NO02G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at chr2:602630..604335+ (Nannochloropsis oceanica)
TTCGCGCAAAGGAGCCTCTCTTGAAGAAAAAACTGGGCACCTGCATCCCA
TTCTGACAATGCCGCTCTGATGAGTTGATTCTTGTGCGGTCGTAACCTTT
GCTTTCAGCCTGACAATCTGGCCTTCGCCCGGCAAATGTTACGGGTACTT
GTGAAGGCACACGGTCAACCAAGGGAGCGGGACAGGAGGTTTAATGTGCC
CCACCGCTCTGGCTCGCACTCCATACGACACATGTCGTTCTCTGCGTCTG
ACCTGGTGTTGACTGCATGACAATGAGAGCGCGCCCTAGACTGCATCAGC
TCTGACCCGTCCCCACCCACCACCCACGTCGACACTCGCACAGCCACTGT
CCCAGCGCCTAGCTATTAGTCATGAAGCTCTCCAGTGCCACCGTCATCTT
GGCCGCCGCTCTCCTGAGCCTGACCTCCGCCTTTGTCCTTCCCGTCCCGG
GCAGCAGCAGCAGCAGCAGCAGCAGCACCTCTATATCAAGAACCTATCGG
TGCGTCCTAATTTTGAGCGTCGACGTAGACTAAAGTGACGCATGTCTCAA
CCTGGTTGCACGAAATCCTCATGACGTCTCCCCTTCCATTACTATTTCTC
CCTACCAGACCCAAGACAACGACAACTTTCGCGTCCGGGGGCAGCAGCGA
GTTTAACAAGAACCGGGCGGCCCGCAAGCCTGGTCCCATGGATCTCGTAG
TGGAATTGCAGAAGCCTCTTGGAATTGTCCTGGAGGAGGACGAGAAGGGG
AACGTCTACGTGAAGGAGCTTTCCCCCGCCGGAAACGCTGCGCGGGTACG
TAATTCTTTTACCAAAAATCGCCCGAATTAATATTGTATTAAAACATGTT
CACACCTCTCATCCATCCCTCCACTCATGTCTCCCGTGTTCTTTCACCGT
CGCCCCCCCCCCACATAGTCGGGCAAGGTCGAGAAGGGTGACCTGGTGAC
GATGATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGCGCGGGGGGCTG
GATTAGGGATGATTATGCAGGCCATCAAGGTTCGACAGGGGAATTCAGTG
AAGATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAGAAGAACATGTT
CAGTACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAAGCCGGATGAGG
CGACATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGAAGAAGAAATTT
TTCGGACTGTTTTAAAGTGAATGGAAAACAAGGGAAACGCGAGGTGTAAT
TTGATCCCTTGTGTGAAGTAAGTAAGCAGTGTGAGTGACGAGCGAGGCCG
AGCTAGTATATTTGGTGTCTGTGTGTATCTCTGTGTGTTCGTCACATTCG
TTTTTACTGTTACTGTGTCGTCCTCCTCACAAAGTGTGCGCGTGGTACTT
GTCCCCTCTTCCTTTTCATCCCTCCTGCTTTGCCAAGGGGGAGAGGGAGA
TCGCGGCAGTAGAGGAGACAAACCGCATAAACTAAATCAAGACCGTTCGT
TCTAGTTTATAATATTGTTTTTTTGGAACAGAGGAGGGACGCAAATGGAG
AGGAGATAGGCTCGTGCAACACACACAGAAAGTGCACAGCCACACACGTG
CGCGAATGATACGCTGCACGCACTCTGCGCGCGTTGAGGAAAAAGAGAAA
GAACGAAACAAACAAAATGGTAACAAGTGATTTGACACGATTGTCTCTCT
CTCTCT
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Coding sequence (CDS) from alignment at chr2:602630..604335+

>NO02G02130.1 ID=NO02G02130.1|Name=NO02G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr2:602630..604335+ (Nannochloropsis oceanica)
ATGAAGCTCTCCAGTGCCACCGTCATCTTGGCCGCCGCTCTCCTGAGCCT
GACCTCCGCCTTTGTCCTTCCCGTCCCGGGCAGCAGCAGCAGCAGCAGCA
GCAGCACCTCTATATCAAGAACCTATCGACCCAAGACAACGACAACTTTC
GCGTCCGGGGGCAGCAGCGAGTTTAACAAGAACCGGGCGGCCCGCAAGCC
TGGTCCCATGGATCTCGTAGTGGAATTGCAGAAGCCTCTTGGAATTGTCC
TGGAGGAGGACGAGAAGGGGAACGTCTACGTGAAGGAGCTTTCCCCCGCC
GGAAACGCTGCGCGGTCGGGCAAGGTCGAGAAGGGTGACCTGGTGACGAT
GATTAGCGCCACATTTGGGGACGAGTGCTGGAGCGCGCGGGGGGCTGGAT
TAGGGATGATTATGCAGGCCATCAAGGTTCGACAGGGGAATTCAGTGAAG
ATCGTGTTGGAGCGAGCGAAGAAGGTGGCGCCCAAGAAGAACATGTTCAG
TACCCCAGCCCCGAAGCCCAAGCCAGCACCAGTGAAGCCGGATGAGGCGA
CATTGCTGAAACAATTGGAGGCGGAGGAGAAGGGGAAGAAGAAATTTTTC
GGACTGTTTTAA
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Synonyms
Publications