NO02G02070, NO02G02070 (gene) Nannochloropsis oceanica

Overview
NameNO02G02070
Unique NameNO02G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2487
Alignment locationchr2:592116..594602 -

Link to JBrowse

Properties
Property NameValue
DescriptionCysteinyl-trna synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:592116..594602 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006423cysteinyl-tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004817cysteine-tRNA ligase activity
GO:0005524ATP binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_1a_anticodon-bd
IPR032678tRNA-synt_1_cat_dom
IPR015273Cys-tRNA-synt_Ia_DALR
IPR024909Cys-tRNA/MSH_ligase
Homology
BLAST of NO02G02070 vs. NCBI_GenBank
Match: OSX72654.1 (hypothetical protein BU14_0416s0016 [Porphyra umbilicalis])

HSP 1 Score: 400.2 bits (1027), Expect = 9.800e-108
Identity = 235/482 (48.76%), Postives = 293/482 (60.79%), Query Frame = 0
Query:   62 PPRIAT-SRASASSTAMAADNNALSRKL--LTSD----IPFQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKI--SLPE---LTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGM------ERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWET-ALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNV--ENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKG----FEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPP 519
            P R+A  + ASA      AD+ A+S +    T+D        LYNT +R K+ F    P  V+FYSCGPT+YD AHIGNFRAFL YDV KRWL   GY+V H+ NLTDVDDKII +++RD +  SL +   LT KYA  FF DL  LN+VPA+ YPRAT+HI ++  ++  L+ +G AYE+ GS YF V+ FP YG+LARL           + G G G    DADEY  ++GDA+DFALWKA+K  DG V W +  LG+GRPGWHIEC+ MA  YLG T+D+H GGVDLVFPHHENE AQ+EA  G   +   W+HN FV +  +++KMSKS GN+++L       +  RAFR+LVV + YRSPL F+   ++ A +TV RLD +R +L D                            F A M DDLNTPRAAAALF LV  AEKALK     L P  A  V   L   D V GI Y PP
Sbjct:   72 PARVAAPAMASADPYGSPADDAAVSGRAPGFTADELAASTLHLYNTMTRTKDVFVPFGPPAVTFYSCGPTVYDRAHIGNFRAFLVYDVAKRWLTARGYAVNHVMNLTDVDDKIIAKVSRDGVGGSLADASALTHKYADAFFADLAKLNVVPATTYPRATDHIPEMEDLIGGLLRKGVAYEAGGSTYFSVDAFPGYGELARLPPPSQTLTPTTDGGDGNGAAAVDADEY--DRGDARDFALWKAWKPADGGVVWASPTLGRGRPGWHIECTCMALKYLGTTIDIHGGGVDLVFPHHENERAQAEACTGA-LYVRTWLHNAFVTIGGDDDKMSKSLGNWVSL-----DDVPPRAFRWLVVVAAYRSPLAFSAATVKAASRTVRRLDGVRAKLADAAAXXXXXXXXXXXXXXXXXXXXXXXXRFVAAMDDDLNTPRAAAALFGLVGAAEKALKRGG--LSPPSAAAVDACLADFDVVFGIAYTPP 543          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: KHO45495.1 (cysteinyl-tRNA synthetase [archaeon GW2011_AR3])

HSP 1 Score: 398.3 bits (1022), Expect = 3.700e-107
Identity = 198/421 (47.03%), Postives = 281/421 (66.75%), Query Frame = 0
Query:   95 FQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQ-GSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGF-GMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            F+L+NT +R  E F+  +  +V  Y+CGPT+YD+AHIGN+RA++  D+L+RWL YSGY V  + NLTD+DDK I+   +  +SL + T KY   FFED+ ALNI  A+ YP+AT++ID++V +++ LME+GFAY  + GS+YF V KFP YGKL+R+  S +E+GA    G   +DEY  E+  A DFALWKA+  +DG VFWET +G+GRPGWHIECSAM+   LG   D+HAGG+DL+FPHHENE+AQSE A+GGK F + W HN ++ V  +KMSK  GNF TL+  L+ G   +A RYL++++ Y+ PLNF +  L+GA++T+ RL        + + K KE  G    +   +E   K F A M DDLN   A A++F  ++   K +      L    A+E+L  ++++D+VLG+
Sbjct:    2 FKLFNTLTRSIEDFRAIKKGQVRMYTCGPTVYDFAHIGNYRAYICSDILRRWLEYSGYEVRQVMNLTDIDDKTIRDSQKHNMSLKDFTAKYITAFFEDIDALNIERANEYPKATDYIDEMVRLIKTLMEKGFAYRGEDGSIYFSVRKFPDYGKLSRVKISELEQGA---SGRVKSDEY--EREQANDFALWKAWDRDDGNVFWETEIGRGRPGWHIECSAMSMRLLGGHFDIHAGGIDLIFPHHENEIAQSEGASGGK-FADYWFHNEYLMVNGKKMSKKLGNFFTLRDLLEKGFSPKAIRYLLMSAHYKVPLNFTETALQGAEETIARLK-------EFISKLKEANGSHTDISSHLEACKKQFGASMDDDLNISSALASVFDFMREINKLMADGT--LSAENAKEILGFMKKLDKVLGL 407          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: OGC81446.1 (cysteine--tRNA ligase [candidate division Zixibacteria bacterium RBG_16_43_9])

HSP 1 Score: 397.1 bits (1019), Expect = 8.300e-107
Identity = 199/418 (47.61%), Postives = 274/418 (65.55%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            +L+NT +R+KE F + EP K+  Y+CGPT+YD+AHIGNFRA++  D+LKR+L Y GY V+ + NLTD+DDK I+   ++KISL E T +Y   FF+D+KALNI  A  YP AT HI D+V++V++L+E+  AY+  GS YF+++ FP+YGKL+++    ++ GA         DEY  EK +  DFALWKA+ E+DG VFWET +GKGRPGWHIECSAM+  YLG   D+H GGVDL+FPHHENE+AQSE A  G++F N W+HN  + VE  KM+KS GN+ TL+  L  G    A RYL++ + YR  LNF  EGL+GAK  + RL     RL  +  +    E    + +++++A  GFE  + DDLNT  A   +F LVK   + +          +A + L  ++R D VLGI
Sbjct:    4 RLFNTLTRQKEDFVSIEPGKIRMYTCGPTVYDFAHIGNFRAYVFADLLKRYLRYKGYEVKQVMNLTDIDDKTIRGSQQEKISLSEYTARYKDAFFQDIKALNIERADVYPEATAHIVDMVNLVKKLLEKSHAYQLGGSSYFKISTFPSYGKLSKMKMEDLKAGAR-----ISKDEY--EKEEIGDFALWKAWDEKDGEVFWETEVGKGRPGWHIECSAMSMKYLGKHFDIHTGGVDLIFPHHENEIAQSEGAT-GEKFVNYWLHNEHLLVEGRKMAKSFGNYFTLRDILSKGYNPIAIRYLLLATHYRQQLNFTFEGLDGAKNALQRLHDFIDRLKGIRSQKSHPE----VAEILKEAQSGFEESLDDDLNTSSALGKIFDLVKEINRFIDEGD--FSSQDAEKTLALMQRFDSVLGI 407          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: OYT30829.1 (cysteine--tRNA ligase, partial [Candidatus Woesearchaeota archaeon ex4484_78])

HSP 1 Score: 397.1 bits (1019), Expect = 8.300e-107
Identity = 202/423 (47.75%), Postives = 283/423 (66.90%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYE-SQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFG----MKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            ++YNT ++K E FK  +   V FYSCGPT+Y++AHIGNFR+F+ YD+LKR+L Y GY V+H+ N+TDVDDK I+   ++ +SL E TEKY + F EDLK+LNI      P+ATEHI++++ ++++L+++G AY+ S GS Y+ V+KF  YGKL+ +    ++ GA         DEY   K +  DFALWKAY EEDG V+WET LGKGRPGWHIECSAM+  YLG T D+H+GG+DLVFPHHENE+AQSE A  GK+F N WVH  F+ V  +KMSKS GNF TL+  LK G +  A R+L++++ YR  LNF  E L+ A+ T+ +L +  + LL++    +ED+        +K++IEKA  GFE  M +DLN   A A++F  V    K +      +   EA+ +L  + ++D VLG+
Sbjct:    3 KIYNTLTKKVEVFKPIKEGFVGFYSCGPTVYNFAHIGNFRSFVFYDLLKRYLKYKGYKVKHVMNITDVDDKTIRDSKKEGLSLKEFTEKYTRYFIEDLKSLNIELPDVMPKATEHINEMIDLIKKLIDKGLAYKASDGSTYYDVSKFKDYGKLSGIKVEDLKAGARV-----SQDEY--SKDEVHDFALWKAYSEEDGDVYWETELGKGRPGWHIECSAMSMKYLGETFDIHSGGIDLVFPHHENEIAQSEGAT-GKKFVNYWVHCEFLKVNGKKMSKSLGNFYTLRDILKRGYDPIAVRFLLLSTHYRQQLNFTFEALKSAENTIEKLREFIRSLLEISLHNEEDKDKSNDKVEIKELIEKARTGFEQAMDNDLNISEALASIFEFVNEINKRIMKNE--INKEEAKMILKFMFKIDSVLGL 415          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: KPK77204.1 (cysteinyl-tRNA synthetase [candidate division Zixibacteria bacterium SM23_73])

HSP 1 Score: 396.0 bits (1016), Expect = 1.900e-106
Identity = 196/418 (46.89%), Postives = 275/418 (65.79%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            Q +NT +RKKE F T    +V  Y+CGPT+YD+AHIGNFRA++  D+L R+L Y GY V ++ N+TDVDDK I    ++KI+L + T++Y Q FFED+K+LNI PA  YP AT HI+D+V +V+ L+++G+AY+++GS YF++   P+YGKL+ +D  G++ GA        +DEY  E+    DFALWK + E+DG VFWET +GKGRPGWHIECS M+  YLG   D+H GGVDL+FPHHENE+AQSEAA  G++F N W+HN ++ VE +KM+KS GN+ TL+  L  G    A RYL++ + YR  LNF  +GLE +K  + RL       +D ++  KE++    + ++I KA + FE  + DDLN   A    F LVK   + +      +  S+A +VL  +   D VLGI
Sbjct:    4 QFHNTLTRKKEEFSTVHLGEVRMYTCGPTVYDFAHIGNFRAYVFGDLLHRYLKYKGYRVTYVINITDVDDKTIAGSQKEKIALRDYTKRYRQAFFEDVKSLNIEPADIYPEATLHINDMVGLVKILLQKGYAYQNEGSTYFKIASVPSYGKLSHMDLQGLKAGARV-----SSDEYGKEQ--VADFALWKGWDEKDGDVFWETEVGKGRPGWHIECSVMSMKYLGKHFDIHTGGVDLIFPHHENEIAQSEAAT-GEKFVNFWLHNEYLMVEGKKMAKSLGNYYTLRDLLNKGYNPIAIRYLLLATHYRQQLNFTFDGLEASKNALQRL----YDFMDNLKMVKEEKSNSKVDEIISKAKQEFEDALDDDLNVSEALGVAFNLVKDVNRLMDDKK--ISKSDAEKVLEMMNNFDSVLGI 407          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: WP_089942549.1 (cysteine--tRNA ligase [Candidatus Entotheonella palauensis])

HSP 1 Score: 394.8 bits (1013), Expect = 4.100e-106
Identity = 197/426 (46.24%), Postives = 277/426 (65.02%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVE 522
            + YNT +R+KE F   EP KV+ Y+CGPT+Y+Y HIGN+RA++  D+L+R+L Y  Y V  I NLTDV+DKII+   +  ++L   T++Y   FFEDLK LNI  A  YP AT HI ++V M+Q L+ERG+AYE++GSVY+R+++FPAYGKLA  D   ++RGA    G  D DEY  +K D  DFALWKA+  +DG ++W+TALG+GRPGWHIECSAM+  YLG   D+H GG D +FPHHENE+AQSEAA  G+RF N W+H   + V+N+KMSKS GNF TL+  L+ G + +  RY ++++ YR  +NF  EG+ GA+  V RL      L     +  + +G   +  ++++    FE  + DDLN   A  A+F +V+   +A+      L  + A +V   + R D VLG+  D  +V+
Sbjct:    3 RFYNTMTRQKEDFHPIEPGKVNMYTCGPTVYNYPHIGNYRAYMFEDLLRRYLKYRHYQVTQIMNLTDVEDKIIRDSQQTGLTLDAFTQQYKTAFFEDLKTLNIEAAEVYPEATTHIAEMVEMIQTLIERGYAYEAEGSVYYRIDRFPAYGKLAHFDPGELQRGA---SGRIDIDEY--DKDDVHDFALWKAWSPDDGEIYWDTALGRGRPGWHIECSAMSMKYLGSHFDIHTGGEDNIFPHHENEIAQSEAAT-GQRFVNYWLHCRHLLVDNQKMSKSLGNFYTLRDLLERGYKPKGLRYALLSTHYRQSMNFTLEGISGAENAVQRLLDFMNTL-----QTADGDGTADVSALLQQTQARFEESLDDDLNIAGALGAIFEMVREVNRAIADRQ--LSSAGAEQVSALMHRFDTVLGVLADDDAVD 415          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: XP_002176430.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC42666.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 394.0 bits (1011), Expect = 7.000e-106
Identity = 221/456 (48.46%), Postives = 294/456 (64.47%), Query Frame = 0
Query:   90 TSDIP-FQLYNTASRKKEPFK--TEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKIS-LPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYES-QGSVYFRVNKFPAYG-KLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKE--EDGPVFWET-ALGKGRPGWHIECSAMARTYLG-LTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRL--------LDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPF------LPPSEAREVLVALERMDEVLGIFYDPPSVE 522
            T+D P   L+N+ +R KEPF+    + + VS Y+CGPT+YD+AH+GNFRAFLTYDVLKR L Y GY V H+CNLTDVDDKII+R    KI  +  LT +Y Q F +DL+ALNI PA +YPRATEHIDD++ +++ L ++  AYE+  GS YFR    P YG +L +L++  M   A    G +D  E+ A      DF LWKA+K   +     WE+  +  GRPGWH+ECSAMAR + G  T+D+H GG+DL FPHHENE+AQSE A G   FCNCW HNGFVN++NEKMSKS GNFLTL+G+     ++RA+RYL V+SQYR  L F  + +  A+  + R+DK++ +L          VV++  + E    +  V   AL+ FE  + DDL+ PRA+AALF+LVK AE  LK           L  +  R +L A+++MD+V GIFY  P  E
Sbjct:   65 TTDAPVLSLFNSKTRAKEPFRPVRADTNVVSMYTCGPTVYDFAHVGNFRAFLTYDVLKRVLRYLGYHVTHVCNLTDVDDKIIQRANEQKIDHVQTLTRRYEQHFRDDLQALNIQPACQYPRATEHIDDMMDLIRVLRDKELAYETPDGSWYFRTQAQPRYGTQLVQLNYQEM---AQTERGESDDKEHFA------DFCLWKAFKTGVDRMDAAWESNDIALGRPGWHLECSAMARHFFGDDTIDLHGGGIDLKFPHHENEIAQSEGATGNV-FCNCWFHNGFVNMDNEKMSKSLGNFLTLRGACPTPDDVRAYRYLAVSSQYRQALAFTPQAMTAARNAIARMDKIKNQLEECTRVNGASVVDETTDSE----LPTVARTALENFEVAICDDLSMPRASAALFSLVKAAEGELKRVNKVSDDEVSLDYTGLRRILDAMKQMDQVFGIFYRVPVSE 506          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: OEU18426.1 (cysteinyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 390.2 bits (1001), Expect = 1.000e-104
Identity = 211/413 (51.09%), Postives = 274/413 (66.34%), Query Frame = 0
Query:   92 DIP-FQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKI---SLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYES-QGSVYFRVNKFPAYG-KLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKE----EDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRK-------RLLDVVEKGKEDEGGFGMKD-VIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALK 487
            DIP   L+NT SR KE  KT  P KVS Y+CGPT+YDYAH+GNFRAFLTYD++KR LLY GY V HICNLTDVDDKII R   +K+    + ELT K+   FFEDLKALN++ A +YPRAT+HI +++ M+ EL E+  AYE+  GS YF  +    YG +L +L+   ME      G  ND       K + +DFALWKAYKE    ED        + KGRPGWH+ECSAMAR YLG T+D+H GG DL FPHHENE+AQSE A  G  FCNCWVHNGFVN+ +EKMSKS GNFLTL+ +     ++RAFR+L+++SQY+  L++  +G+  +K+ + R+DK+ +       R  D  +   +D+    + D  I K L+ FE  + DDL+ PRA+A+LF+L+K AE   K
Sbjct:   21 DIPDLILFNTKSRSKESLKTIVPRKVSMYTCGPTVYDYAHVGNFRAFLTYDLVKRVLLYFGYDVTHICNLTDVDDKIINRANENKLPNGKISELTLKFENYFFEDLKALNVILADKYPRATDHIPEMMDMILELAEKDLAYETDDGSWYFATSNKEGYGEQLVQLNRDEMEMSTKSVG--NDM------KRNYQDFALWKAYKENVDREDATWELPGKIQKGRPGWHVECSAMARKYLGDTIDIHGGGCDLQFPHHENEIAQSEGAT-GTTFCNCWVHNGFVNINDEKMSKSLGNFLTLRTACPKPDDVRAFRFLIMSSQYQKQLSYTSDGMVASKRALKRIDKVMQQINDSIIRKSDTTDTESDDQQKKSLLDNDIAKNLENFEKALLDDLSMPRASASLFSLIKIAENEFK 424          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: OYT49554.1 (cysteine--tRNA ligase [Candidatus Bathyarchaeota archaeon ex4484_231])

HSP 1 Score: 389.8 bits (1000), Expect = 1.300e-104
Identity = 204/422 (48.34%), Postives = 277/422 (65.64%), Query Frame = 0
Query:   97 LYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQ-GSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALK----GFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            L+NT +RKKE F      KV+ Y+CGPT+YD+AHIGNFR ++  DVL+RWL Y GY V  + N+TDVDDKII  + R+K SL E T +Y + FFEDL++LNI  A  YPRATEHI D+V ++Q+L+E+G+AY  + GS+Y+ ++KF  YGKL+++    ++ GA        AD Y   K    DFALWKA+ E DG V+WET LGKGRPGWHIECS MA  YLG T+D+H+GGVDL+FPHHENE+AQSEAA  GK F   WVH+  + VE  +M+KS GNF TL+     G +  A R+L++++ YR  LNF  + LE A+ TV       +RL+  +E+ KE +G  G+ + ++K ++     FE  M DDLN   A A LF+ ++   K +      +  SEARE+   + R D+VLGI
Sbjct:    7 LFNTLTRKKERFVPLREGKVTLYTCGPTVYDFAHIGNFRTYVFQDVLRRWLEYRGYEVIQVMNITDVDDKIIAGVNREKTSLKEYTRRYEKAFFEDLESLNIEKAEHYPRATEHIPDMVALIQKLLEKGYAYRGEDGSIYYDISKFKEYGKLSKIKIQALKPGARV-----KADHY--GKESPYDFALWKAWDEADGEVYWETPLGKGRPGWHIECSVMAMKYLGETLDIHSGGVDLIFPHHENEIAQSEAAT-GKPFARYWVHSEHLMVEGRRMAKSLGNFYTLRDLTAKGYDPLAVRFLLLSTHYRQQLNFTFKALEAAENTV-------ERLVTFMERLKEADGS-GLGEPLQKLMRETQTRFEEHMDDDLNITEALAVLFSFIREVNKLMDENK--VSRSEAREIRKLMYRFDKVLGI 410          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: PIU75596.1 (cysteine--tRNA ligase [Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12])

HSP 1 Score: 387.9 bits (995), Expect = 5.000e-104
Identity = 200/418 (47.85%), Postives = 275/418 (65.79%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGI 514
            +LYNT SRKKE F+  +  +V+ YSCGPTIYD+AHIGNFRA++T D+LKR+L YSG+ V+ + NLTDVDDK I+R   +KISL ELT+KY + F ED++ LNI+     P+ATEHI ++V +V++L+E+G+AY +   +YF +++F  YG+LA L+   +++ A         D Y  EK +AKDFALWK ++ EDG V+W+T +GKGRPGWHIECSAM+  YLG   D+H+GGVDL+FPHH+NE+AQSEAA  GK+F N WVHN ++ V+ +KMSKS GNF TL+  +K G E  A RYL +T+ YRS LNF  E LE ++    RL  +   L D  +  KE              LK FE  M DDL+TP+A   L+ LV+                +A      ++++D+VLG+
Sbjct:    3 KLYNTLSRKKEVFEPIKDKQVNMYSCGPTIYDFAHIGNFRAYVTADLLKRFLNYSGFKVKQVMNLTDVDDKTIRRSQEEKISLKELTKKYEKAFIEDIQTLNIIMPEVIPKATEHIKEMVALVKKLLEKGYAYRTGDGIYFSISRFKNYGRLAGLNLKKLKQTAR-----MRKDNY--EKEEAKDFALWKLWQPEDGAVYWQTEIGKGRPGWHIECSAMSMKYLGEHFDIHSGGVDLIFPHHQNEIAQSEAAT-GKKFVNFWVHNEWLFVDGKKMSKSLGNFYTLRDIIKKGFEPLALRYLFLTAHYRSQLNFTFENLESSQNAYERLKNIASELKDDKKTNKE-------------YLKEFEDAMNDDLDTPKALKVLWELVR--------------DEKAEGKFQTIKKIDDVLGL 385          
The following BLAST results are available for this feature:
BLAST of NO02G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OSX72654.19.800e-10848.76hypothetical protein BU14_0416s0016 [Porphyra umbi... [more]
KHO45495.13.700e-10747.03cysteinyl-tRNA synthetase [archaeon GW2011_AR3][more]
OGC81446.18.300e-10747.61cysteine--tRNA ligase [candidate division Zixibact... [more]
OYT30829.18.300e-10747.75cysteine--tRNA ligase, partial [Candidatus Woesear... [more]
KPK77204.11.900e-10646.89cysteinyl-tRNA synthetase [candidate division Zixi... [more]
WP_089942549.14.100e-10646.24cysteine--tRNA ligase [Candidatus Entotheonella pa... [more]
XP_002176430.17.000e-10648.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU18426.11.000e-10451.09cysteinyl-tRNA synthetase [Fragilariopsis cylindru... [more]
OYT49554.11.300e-10448.34cysteine--tRNA ligase [Candidatus Bathyarchaeota a... [more]
PIU75596.15.000e-10447.85cysteine--tRNA ligase [Candidatus Pacearchaeota ar... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006829NSK006829Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02070.1NO02G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636094gene_793Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CYSRSgene204Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02070.1NO02G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02070 ID=NO02G02070|Name=NO02G02070|organism=Nannochloropsis oceanica|type=gene|length=2487bp
GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC
GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA
AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC
CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC
AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT
CCACCAAGgtaagacgggcatgcatcaacgtgtgtgaacgttggacagcc
aagtaagcagggattatggatgatactttccttcgaccaccttacttacc
gtcgataccacatccacacatgagcacagGATTGCCACCTCGCGTGCTTC
TGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCCTGTCCCGCAAAC
TATTGACAAGCGACATACCTTTCCAGCTCTACAACACGGCCTCCAGAAAA
AAGGAGCCATTCAAGACCGgtacgtgccttcccttcctgtcatttcttcc
agcatgtgtagctgttcccttcatttctgctttcacacttagtgaagcga
atctttgcatactcaatttcttccgttctcactaacccatcatattcacc
tgccctccctccctccctccctccccctccccttccctctccccagAGGA
ACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTACG
CGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGG
TGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACGGA
TGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTTGC
CGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGGCA
TTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATTGA
TGACATAGTTCATATGGTGCAGGAATTGATGGAACGgtaggtgcttcctc
tctccttccttcccttcaatgcagcgtacctcctctctccctcataattg
tctcagcggcctcctcctccttataaatttctctttttaaattacctctg
atctcatcacaacaatttctgtccgccttccctccctccctccttctctc
catccctccctcgtctgtccagGGGTTTCGCTTACGAAAGCCAAGGTTCC
GTCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCT
GGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACG
ATGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTG
TGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACT
GGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGA
CATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTT
TTCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGG
GAAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAA
ATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGC
TTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAG
CCAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAA
AGAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTG
GTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGAT
TGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATA
CACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAA
GCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGT
TTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACC
CTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAGGAGGGAGGGGGACCGG
TGATTGTGGCTTTGAATGACTTGCCTGTGGAAGCGCAGGAGTTAGTAAGG
AGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGGGGGAGGCAGATGGATG
TAGGGATGCGTTGAAGAGTAAATTTGGGGTGATTTTAAAGGATGTGAAGG
GGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGGTGGAGGGAGGGAGCAG
GGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAAGGAAGGGGAAGGGAAA
GAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGGAAATCCAAATTAAGGA
GAAAGAAAGTACGTACGCATGCACATGTTCCTATGGT
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protein sequence of NO02G02070.1

>NO02G02070.1-protein ID=NO02G02070.1-protein|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MAVAPRPPPLPRPRSIFKPYEPHHLQHALPFLLLLLVLGQPSTVQAFLSP
FSLSLYSFIRYPPRIATSRASASSTAMAADNNALSRKLLTSDIPFQLYNT
ASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYS
GYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVP
ASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARL
DFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETAL
GKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGG
KRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTS
QYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVI
EKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREV
LVALERMDEVLGIFYDPPSVEGG*
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Synonyms
Publications