NO02G01970, NO02G01970 (gene) Nannochloropsis oceanica

Overview
NameNO02G01970
Unique NameNO02G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1396
Alignment locationchr2:563860..565255 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:563860..565255 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G01970 vs. NCBI_GenBank
Match: EWM30438.1 (hypothetical protein Naga_100100g15 [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 8.200e-26
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 0 
Query:   62 PTGEPYREHVKIIPPSKERTARVIKQAHHKRLKQVRGADRQIAAAIRAHYQERLEKGKARVMAKAYAVWQGEMKERIRILSTRLQNSVVSIGAGHRQAEAXXXXXXXXXXXXXXXXXXXXXXXXVRFGRAQERARVGGRQR 203
            P   P    VK++PPS+ER AR+IKQAH KRLKQVR AD     AIR HY+ERLEKGKARV+AKAYA WQ + +ER+  L  RL  +V+SIG+GHR AE                XXXXXXX   RF +AQER R  G+QR
Sbjct:   29 PNAVPLGRQVKLVPPSEERVARIIKQAHQKRLKQVRVADXXXXXAIRTHYRERLEKGKARVIAKAYAAWQRDKRERVGTLKARLGETVLSIGSGHRMAEKEVAEREEGTDEREAKXXXXXXXESFRFSQAQERIRDAGQQR 169
The following BLAST results are available for this feature:
BLAST of NO02G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30438.18.200e-2655.32hypothetical protein Naga_100100g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006845NSK006845Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01970.1NO02G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627209gene_782Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100100g15gene214Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01970.1NO02G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01970 ID=NO02G01970|Name=NO02G01970|organism=Nannochloropsis oceanica|type=gene|length=1396bp
ACAGGCTAACACGGTGCATCACCACTACACACAAAATCTACACCACACCC
AGGGTCTCGTTCAATCAGAGATCATGGTGGTGGCGGTCTACACAAAGCGC
ACTCAGCAGGGCTCTAACACCTTTCCCGCCTCGGCTTCAGCTCCCGCTTC
CGCCGCCTCCCCAAGAGGCGGTACTAAGACCAGCGCCAAGGAAAAGCCGC
GGCCTCCTCCTTCTCGGGCGGCAGCTTTTATCCCACCTTTGCTCCAGCAG
GAGCCGCCTACCGGCGAGCCGTACCGGGAGCACGTCAAAATAATTCCCCC
TTCTAAGGAGCGCACAGCCCGCGTCATCAAGCAGGCCCACCACAAAgtac
gtatcagtaaattagggaaatagccggggtgagttggtgagaggggtaat
attatattccttttgtttgaagtgtctgagccgtggatggattgctcaca
tgtggcatcaaaagggagaatgggaatgccctgttgaaggcgcgtgggga
gaagaataggattgttatctacttaattcttcttccaaataaaaggcgcg
actcgcacttccctgaaatacatttttttttcatttaaactcattcaccg
actcctggctcatccaccttcgcagCGGTTAAAGCAAGTCCGCGGGGCCG
ATCGTCAAATTGCTGCCGCCATCCGTGCCCACTACCAGGAACGCCTCGAA
AAAGGGAAGGCCCGAGTCATGGCCAAGGCTTACGCAGTCTGGCAGGGAGA
GATGAAAGAGAGAATACGTATACTGAGCACGCGATTGCAAAACTCTGTTG
TGTCCATTGGTGCAGGGCATCGCCAGGCCGAAGCAGCAGTCATGGAGAAG
GAGCGACAAGCAGCGGCGGCAACGCAACAGGCTCAGAAACGACGCGAGGA
GGAATCTGTCCGCTTTGGTCGAGCACAAGAGAGGGCGCGGGTGGGAGGCC
GGCAACGGGCGGAGATGTCGCGGTCCTCGTCCCAAGCCCGGCAGAGGGAA
GAGAGTCGGAAAAACTTTATGATCAAGTCTCGGTCGATGACGCAACTGAG
GAGCAGCAGCAGCAGCAGCAGTGGCAGCATTTTGCCGAAAATGAGCCTGG
CTGCCAGTACAGGGGCCGTTCAAACCAGCAGTCCTTTTTTGGTGCGTGGC
GCTGTGAGAGCAAGGAGGACATCGAGCGCGGGAAGGCGTATGGGAATGGG
AGGAGGGGTGGGAGGGAAGAAAGGGAAAATGGCGGATGAGTTGCTCGAGG
CGTTGGCGTCGCTGGACCGAGATCGGAAGATGCAGAAGCAAGACGTCATA
TCTTCATTTGCATTGCAACCATCTCAGAAAGCGAGTCGTAGAGGAGGAGG
AGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGGGGGAGTGGGTAA
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protein sequence of NO02G01970.1

>NO02G01970.1-protein ID=NO02G01970.1-protein|Name=NO02G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MVVAVYTKRTQQGSNTFPASASAPASAASPRGGTKTSAKEKPRPPPSRAA
AFIPPLLQQEPPTGEPYREHVKIIPPSKERTARVIKQAHHKRLKQVRGAD
RQIAAAIRAHYQERLEKGKARVMAKAYAVWQGEMKERIRILSTRLQNSVV
SIGAGHRQAEAAVMEKERQAAAATQQAQKRREEESVRFGRAQERARVGGR
QRAEMSRSSSQARQREESRKNFMIKSRSMTQLRSSSSSSSGSILPKMSLA
ASTGAVQTSSPFLVRGAVRARRTSSAGRRMGMGGGVGGKKGKMADELLEA
LASLDRDRKMQKQDVISSFALQPSQKASRRGGGGGGRGGGGGGGGSG*
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Synonyms
Publications