NO02G01850, NO02G01850 (gene) Nannochloropsis oceanica

Overview
NameNO02G01850
Unique NameNO02G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length711
Alignment locationchr2:536759..537469 -

Link to JBrowse

Properties
Property NameValue
DescriptionGDP-mannose mannosyl hydrolase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:536759..537469 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO02G01850 vs. NCBI_GenBank
Match: OEU21961.1 (hypothetical protein FRACYDRAFT_223215 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 143.3 bits (360), Expect = 9.800e-31
Identity = 91/201 (45.27%), Postives = 120/201 (59.70%), Query Frame = 0
Query:   41 GKKKRHRNVRDGYRGATE---DLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDLAIERPSD---GKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGV-EAFPLGVLGVYNTFFPTSNWG--SGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVH----PREKCHHDPYVQEILM 229
            GKK R         GATE   DLSLFYG +   +TT+T   + LP +LY ++VR   + CVD+ + R +     + LLVKR SEPAKG +W PGGR+ +GETFF AA RKA++ETG+ +   + VLG++NTFFPTSNW   +  GT TVN  V + L   G     +V LD+TSEE  W+       EK   D YV + L+
Sbjct:   38 GKKNRKN------AGATEEGNDLSLFYG-EVDELTTITDSRKFLPSDLYGKLVRDCVVFCVDIVLVRTNSENKKECLLVKRSSEPAKGLWWWPGGRMLKGETFFDAAKRKAKQETGLGDVTCMQVLGIWNTFFPTSNWDTETEKGTQTVNAIVLVELNNTG----ADVNLDDTSEESKWISLNPAEAEKNGEDKYVLQGLL 227          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: XP_002180031.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48222.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.4 bits (350), Expect = 1.400e-29
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 0
Query:   52 GYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDLAIERPSDGK----FLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGV-EAFPLGVLGVYNTFFPTSNW--GSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWV 212
            G  G   DLSLFYG ++  +T +T   + LP+E+Y  +VR   + CVD+ + R ++ +     LLV+R +EPAKG +W PGGR+ +GETFF AA RKA +ETG+    P+ +LGV+NTFFPTS W   S  GT TVN  V + L   G    G+V+LDETSE + W+
Sbjct:   38 GATGEGNDLSLFYG-NEKELTNITEARKFLPKEIYGHLVRDTVVCCVDIVLVRHNEERSCKECLLVERSTEPAKGLWWWPGGRLLKGETFFDAARRKAFQETGLTNVTPIQILGVWNTFFPTSAWDTDSSKGTQTVNPIVLVELNDVG----GDVKLDETSENYKWI 199          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: GAX09775.1 (colanic acid biosynthesis protein WcaH [Fistulifera solaris])

HSP 1 Score: 138.3 bits (347), Expect = 3.100e-29
Identity = 83/193 (43.01%), Postives = 116/193 (60.10%), Query Frame = 0
Query:   44 KRHRNVRDGYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDLAIERPSDGK--FLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGV-EAFPLGVLGVYNTFFPTSNWGS--GMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWV----HPREKCHHDPYVQEIL 228
            KR +N      G   DLSLFYG D+  +TT+T   + LP ++Y  +VR   + CVD+ + R + G+   L+V+R SEPAKG +W PGGR+ +GETFFAAA RKA +ETG+    P+ VLGV+NTFFP S+W +    GT TVN  V + ++    E   +++LD+ SE + W+       E    D YV E L
Sbjct:   32 KRRKNAGATVEG--NDLSLFYG-DENELTTITDRRKFLPADVYGNLVRDTVVCCVDILLVRYNAGRKETLVVERSSEPAKGLWWLPGGRLLKGETFFAAAQRKAFQETGLSNVKPIQVLGVWNTFFPRSSWDTEESKGTQTVNPIVLVEIL----EDATDIKLDDQSENYRWIGLDPKAAEAAGEDRYVLEAL 217          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: GAX14710.1 (colanic acid biosynthesis protein WcaH [Fistulifera solaris])

HSP 1 Score: 137.9 bits (346), Expect = 4.100e-29
Identity = 82/193 (42.49%), Postives = 116/193 (60.10%), Query Frame = 0
Query:   44 KRHRNVRDGYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDLAIERPSDGK--FLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGV-EAFPLGVLGVYNTFFPTSNWGS--GMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWV----HPREKCHHDPYVQEIL 228
            KR +N      G   DLSL+YG D+  +TT+T   + LP ++Y  +VR   + CVD+ + R + G+   L+V+R SEPAKG +W PGGR+ +GETFFAAA RKA +ETG+    P+ VLGV+NTFFP S+W +    GT TVN  V + ++    E   +++LD+ SE + W+       E    D YV E L
Sbjct:   32 KRRKNAGATVEG--NDLSLYYG-DEKELTTITDRRKFLPSDVYGNLVRDTVVCCVDILLVRYNAGRKETLVVERSSEPAKGLWWLPGGRLLKGETFFAAAQRKAFQETGLSNVKPIQVLGVWNTFFPRSSWDTEESKGTQTVNPIVLVEIL----EDATDIKLDDQSENYRWIGLDPKAAEAAGEDRYVLEAL 217          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: GAX72957.1 (hypothetical protein CEUSTIGMA_g412.t1 [Chlamydomonas eustigma])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0
Query:   77 EARLLPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETG----VEAFPLGVLGVYNTFFPTSNWGSG-----MGTHTVNICV 185
            E + LP E Y+  V  LPI+CVD+ ++RPSDGK LL  R  +PA   +W PGGR+FRGETF   A+RK R+ETG    V A   G++ V+NTFFP S+W  G      GT TVN+ +
Sbjct:   73 EYKRLPMEFYKFAVEHLPIVCVDVVLQRPSDGKVLLFYRKDKPAAKIWWWPGGRMFRGETFEDTALRKIRDETGAGDTVNATAEGIIQVWNTFFPDSSWDQGRRPEQYGTQTVNVTI 189          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: KKU89515.1 (hypothetical protein UY21_C0033G0005 [Microgenomates group bacterium GW2011_GWA1_48_10])

HSP 1 Score: 105.5 bits (262), Expect = 2.300e-19
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 0
Query:   78 ARLLPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGVEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVHPREKCHHDPYVQEIL 228
            +R +P  LY+++ R+LP++CVDL +   S   FLL+KR +EP  G +W PGGRIF+ E    A +RK REE G+    + +LGV+  +F  + +  G  +HTV I   + LV    E + EV+LD+ S E  W     + + DPY+++ L
Sbjct:    5 SRPIPSSLYKKIHRVLPLVCVDLVVRDRSRKSFLLIKRANEPEIGKWWFPGGRIFKNEMLKTAVLRKLREEVGLRGRVIKILGVHE-YFSRTGYFQGTNSHTVPIVFLVDLV----EDKTEVRLDDQSAEFGW-FKNIRSNWDPYLKKFL 148          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: WP_012630546.1 (NUDIX hydrolase [Cyanothece sp. PCC 7425] >ACL47518.1 NUDIX hydrolase [Cyanothece sp. PCC 7425])

HSP 1 Score: 98.2 bits (243), Expect = 3.600e-17
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   79 RLLPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGVEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVHPREKCHHDPYVQEILMA 230
            +L+P  LYEQ++  LPI CVD+AIE   + K LL+KR + PA+G +W PGGR+ +GET  AAA+RKA+ ETG+E   + ++    T F  ++   G+  HT+NIC     +   +  + +  LD +  ++ W        H PY++E LMA
Sbjct:    2 QLIPDSLYEQILACLPIACVDIAIE--FEHKILLLKRKNPPAQGQWWLPGGRVQKGETLEAAALRKAQAETGLECCLVKMIYTGETIF--TDGPMGIPVHTINIC----FLAHPRNLDVQPVLDRSHVDYQWCSQLIPDLH-PYMRECLMA 143          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: KMQ51539.1 (GDP-mannose mannosyl hydrolase [Chitinispirillum alkaliphilum])

HSP 1 Score: 98.2 bits (243), Expect = 3.600e-17
Identity = 56/149 (37.58%), Postives = 83/149 (55.70%), Query Frame = 0
Query:   81 LPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGVEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVHPREKCHHDPYVQEILMA 230
            +PQ+LY +++  +PI CVD+AI   ++G  LLVKR   PAK  +W PGGR+ +GE     A+RKAREE G+E     ++    T FP   +   +  H++N C  +  V      E    LD+  E++ WV+  +  +H  YVQ  LMA
Sbjct:   13 IPQKLYNEIIGNVPIACVDIAI--IANGSVLLVKRKDPPAKDMWWLPGGRVLKGEMMKETALRKAREEVGIECHAGPIIYTAETIFPDGPY--DIPIHSINSCFFLYPV----SAEQIPSLDDHHEDYRWVNCIDNSYHQ-YVQRCLMA 152          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: OIP75829.1 (hypothetical protein AUK07_00850 [Parcubacteria group bacterium CG2_30_36_21])

HSP 1 Score: 98.2 bits (243), Expect = 3.600e-17
Identity = 56/147 (38.10%), Postives = 88/147 (59.86%), Query Frame = 0
Query:   81 LPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGVEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVHPREKCHHDPYVQEIL 228
            +PQ+LY+++  L+PI CVD+ I++    KFLLVKR ++PAKG ++  GGRI +GE    AA RK +EETG++     ++GV  T F    + +G+  HT+NI     +     +G+ EV LD  S ++ W    +   H PY+++ L
Sbjct:    3 IPQKLYKKIQELVPIACVDIIIKKGE--KFLLVKRKNKPAKGQWFFVGGRIMKGELLEEAAFRKVKEETGLDIILKKIIGVDQTIFKKGPFDNGV--HTINIVFLAEV-----KGKDEVNLDSQSVDYKWFRQIDNNWH-PYIRKFL 139          
BLAST of NO02G01850 vs. NCBI_GenBank
Match: OGV46875.1 (NUDIX hydrolase [Lentisphaerae bacterium GWF2_57_35])

HSP 1 Score: 97.8 bits (242), Expect = 4.700e-17
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 0
Query:   81 LPQELYEQVVRLLPILCVDLAIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGVEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVHPREKCHHDPYVQEILM 229
            +PQ+LY Q++  +PI CVD+AI   S G  LLV+R   PA+G  W PGGR+ +GE     AVRKAR+E G+E     ++    T FP   W  G+  H++N C  M       +     +LD    E VW+    +  H  YVQ  LM
Sbjct:    8 IPQDLYNQILEHVPIACVDIAI--VSHGSVLLVRRKDPPAQGHLWVPGGRVLKGEMMKETAVRKARDEVGIECHVGPIIHTAETIFPDGPW--GIPVHSINCCFFMY----PADKNFVPKLDHHQSECVWIDRIPQGLHS-YVQRCLM 146          
The following BLAST results are available for this feature:
BLAST of NO02G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU21961.19.800e-3145.27hypothetical protein FRACYDRAFT_223215 [Fragilario... [more]
XP_002180031.11.400e-2946.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX09775.13.100e-2943.01colanic acid biosynthesis protein WcaH [Fistulifer... [more]
GAX14710.14.100e-2942.49colanic acid biosynthesis protein WcaH [Fistulifer... [more]
GAX72957.11.100e-2149.57hypothetical protein CEUSTIGMA_g412.t1 [Chlamydomo... [more]
KKU89515.12.300e-1938.67hypothetical protein UY21_C0033G0005 [Microgenomat... [more]
WP_012630546.13.600e-1739.07NUDIX hydrolase [Cyanothece sp. PCC 7425] >ACL4751... [more]
KMQ51539.13.600e-1737.58GDP-mannose mannosyl hydrolase [Chitinispirillum a... [more]
OIP75829.13.600e-1738.10hypothetical protein AUK07_00850 [Parcubacteria gr... [more]
OGV46875.14.700e-1738.51NUDIX hydrolase [Lentisphaerae bacterium GWF2_57_3... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01850.1NO02G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01850.1NO02G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01850 ID=NO02G01850|Name=NO02G01850|organism=Nannochloropsis oceanica|type=gene|length=711bp
ATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTGGTGGC
CGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTTTCATC
ACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACGTTAGG
GATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGCATGGA
CCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCCACAGG
AGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAGATTTG
GCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGCGGCTC
AGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTTTAGAG
GGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGACGGGA
GTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTTTTTCC
GACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATATATGTG
TGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGGTGCAG
TTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAGAAGTG
TCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAGCGGAG
TGTGTTTGTAG
back to top

protein sequence of NO02G01850.1

>NO02G01850.1-protein ID=NO02G01850.1-protein|Name=NO02G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MPQDRLTAGLAGALVVAGTWLLTEKGVPQLLFHHVTNLLRGKKKRHRNVR
DGYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDL
AIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETG
VEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQ
LDETSEEHVWVHPREKCHHDPYVQEILMAVASGVCL*
back to top
Synonyms
Publications