NO02G01850.1, NO02G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01850.1
Unique NameNO02G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length711
Alignment locationchr2:536759..537469 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:536759..537469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01850.1 vs.
Match: OEU21961.1 (hypothetical protein FRACYDRAFT_223215 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 143.7 bits (361), Expect = 7.500e-31
Identity = 90/199 (45.23%), Postives = 120/199 (60.30%), Query Frame = 0 
Query:   43 KKRHRNVRDGYRGATE---DLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDLAIERPSDG---KFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETGV-EAFPLGVLGVYNTFFPTSNWG--SGMGTHTVNICVHMRLVGGGKEGEGEVQLDETSEEHVWVH----PREKCHHDPYVQEILM 229
            KK  +N      GATE   DLSLFYG +   +TT+T   + LP +LY ++VR   + CVD+ + R +     + LLVKR SEPAKG +W PGGR+ +GETFF AA RKA++ETG+ +   + VLG++NTFFPTSNW   +  GT TVN  V + L   G     +V LD+TSEE  W+       EK   D YV + L+
Sbjct:   39 KKNRKNA-----GATEEGNDLSLFYG-EVDELTTITDSRKFLPSDLYGKLVRDCVVFCVDIVLVRTNSENKKECLLVKRSSEPAKGLWWWPGGRMLKGETFFDAAKRKAKQETGLGDVTCMQVLGIWNTFFPTSNWDTETEKGTQTVNAIVLVELNNTG----ADVNLDDTSEESKWISLNPAEAEKNGEDKYVLQGLL 227
The following BLAST results are available for this feature:
BLAST of NO02G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU21961.17.500e-3145.23hypothetical protein FRACYDRAFT_223215 [Fragilario... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01850NO02G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01850.1NO02G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01850.1.cds1NO02G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01850.1 ID=NO02G01850.1|Name=NO02G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
ATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTGGTGGC
CGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTTTCATC
ACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACGTTAGG
GATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGCATGGA
CCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCCACAGG
AGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAGATTTG
GCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGCGGCTC
AGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTTTAGAG
GGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGACGGGA
GTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTTTTTCC
GACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATATATGTG
TGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGGTGCAG
TTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAGAAGTG
TCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAGCGGAG
TGTGTTTGTAG
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protein sequence of NO02G01850.1

>NO02G01850.1-protein ID=NO02G01850.1-protein|Name=NO02G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MPQDRLTAGLAGALVVAGTWLLTEKGVPQLLFHHVTNLLRGKKKRHRNVR
DGYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDL
AIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETG
VEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQ
LDETSEEHVWVHPREKCHHDPYVQEILMAVASGVCL*
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mRNA from alignment at chr2:536759..537469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01850.1 ID=NO02G01850.1|Name=NO02G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=711bp|location=Sequence derived from alignment at chr2:536759..537469- (Nannochloropsis oceanica)
ATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTGGTGGC
CGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTTTCATC
ACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACGTTAGG
GATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGCATGGA
CCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCCACAGG
AGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAGATTTG
GCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGCGGCTC
AGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTTTAGAG
GGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGACGGGA
GTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTTTTTCC
GACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATATATGTG
TGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGGTGCAG
TTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAGAAGTG
TCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAGCGGAG
TGTGTTTGTAG
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Coding sequence (CDS) from alignment at chr2:536759..537469-

>NO02G01850.1 ID=NO02G01850.1|Name=NO02G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr2:536759..537469- (Nannochloropsis oceanica)
ATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTGGTGGC
CGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTTTCATC
ACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACGTTAGG
GATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGCATGGA
CCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCCACAGG
AGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAGATTTG
GCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGCGGCTC
AGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTTTAGAG
GGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGACGGGA
GTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTTTTTCC
GACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATATATGTG
TGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGGTGCAG
TTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAGAAGTG
TCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAGCGGAG
TGTGTTTGTAG
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Synonyms
Publications