NO02G01810, NO02G01810 (gene) Nannochloropsis oceanica

Overview
NameNO02G01810
Unique NameNO02G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length977
Alignment locationchr2:528107..529083 +

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Properties
Property NameValue
DescriptionTrna-specific adenosine deaminase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:528107..529083 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of NO02G01810 vs. NCBI_GenBank
Match: XP_005856209.1 (trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526] >EKU20159.1 trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.4 bits (664), Expect = 6.400e-66
Identity = 140/223 (62.78%), Postives = 171/223 (76.68%), Query Frame = 0
Query:   55 VLSLLLLSTSSPFVIPASRPRSHDISACC-----HSQATSMNSTTTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSKILVEKERERDK 273
            V  L LLS   P ++P     +H     C     H+++ ++NS +T  +  ++ DE++M LAL+EAQAAFAA+E+PVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAA+    R   G WRML+ TLYVTLEPCLMCLGAVQSFRV+R+VYGA + +LGAIESY+KVLEQAPHPFH+ LEV+GGV   +CG LMKRFFAERRL+S+ +  K RE  +
Sbjct:   12 VTFLALLSLLCPILLP-----THAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQR 229          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: EWM30484.1 (trna-specific adenosine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 260.4 bits (664), Expect = 6.400e-66
Identity = 140/223 (62.78%), Postives = 171/223 (76.68%), Query Frame = 0
Query:   55 VLSLLLLSTSSPFVIPASRPRSHDISACC-----HSQATSMNSTTTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSKILVEKERERDK 273
            V  L LLS   P ++P     +H     C     H+++ ++NS +T  +  ++ DE++M LAL+EAQAAFAA+E+PVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAA+    R   G WRML+ TLYVTLEPCLMCLGAVQSFRV+R+VYGA + +LGAIESY+KVLEQAPHPFH+ LEV+GGV   +CG LMKRFFAERRL+S+ +  K RE  +
Sbjct:   12 VTFLALLSLLCPILLP-----THAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQR 229          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: CEM35424.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 145.6 bits (366), Expect = 2.300e-31
Identity = 77/160 (48.12%), Postives = 103/160 (64.38%), Query Frame = 0
Query:   98 ASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERR 258
            A    +DER+MRLAL +A  A    E+P+GAVLV  +G+VL+ GRN VEA  DA+AHAEL+C+R AS        G WR+L+ TLY TLEPC MC+GA+Q  R+  +VYGA +  +G   S++ +  +  HPFH  + VRGGV   E   L++ FF E R
Sbjct:   18 ADTHPSDERYMRLALQQAAMAAERGEVPIGAVLVDGQGEVLSVGRNGVEAAHDATAHAELQCIREASQIL-----GTWRLLNCTLYTTLEPCPMCVGAMQLARIHTLVYGASDNRMGGAGSWVSLATEPKHPFHQ-MAVRGGVMATEARQLLRTFFREAR 171          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: OAE35778.1 (hypothetical protein AXG93_3524s1130 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 80/180 (44.44%), Postives = 111/180 (61.67%), Query Frame = 0
Query:   94 TTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKV----------------LEQAPHPFHACLEVRGGVQRDECGALMKRFFAERR 258
            TT     D  DE+FM  AL+EA+ A +  E+PVGAV+V + G+++A   NRVEA GD +AHAE+ C+R+AS       NG WR+ D+++YVT+EPC MC GA+   RVKR+V+GA N +LGA  S++ +                L+Q  HPFH  +EVR  V  D+C  +M+ FF  RR
Sbjct:  196 TTQCQWNDVEDEKFMLEALLEAKKAASLGEVPVGAVVVQN-GRIIARAFNRVEAEGDPTAHAEMLCIRSASK-----TNGDWRLTDASIYVTMEPCAMCAGALLQARVKRVVWGARNKLLGADGSWVSLFPNCESHVDGEAEQSSLQQQQHPFHKSVEVRREVLSDDCSMIMRTFFRSRR 369          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: PTQ35363.1 (hypothetical protein MARPO_0072s0096 [Marchantia polymorpha])

HSP 1 Score: 141.7 bits (356), Expect = 3.300e-30
Identity = 80/180 (44.44%), Postives = 111/180 (61.67%), Query Frame = 0
Query:   94 TTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKV----------------LEQAPHPFHACLEVRGGVQRDECGALMKRFFAERR 258
            TT     D  DE+FM  AL+EA+ A +  E+PVGAV+V + G+++A   NRVEA GD +AHAE+ C+R+AS       NG WR+ D+++YVT+EPC MC GA+   RVKR+V+GA N +LGA  S++ +                L+Q  HPFH  +EVR  V  D+C  +M+ FF  RR
Sbjct:  176 TTQCQWNDVEDEKFMLEALLEAKKAASLGEVPVGAVVVQN-GRIIARAFNRVEAEGDPTAHAEMLCIRSASK-----TNGDWRLTDASIYVTMEPCAMCAGALLQARVKRVVWGARNKLLGADGSWVSLFPNCESHVDGEAEQSSLQQQQHPFHKSVEVRREVLSDDCSMIMRTFFRSRR 349          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: XP_005538889.1 (similar to cytidine/deoxycytidylate deaminase family protein [Cyanidioschyzon merolae strain 10D] >BAM82853.1 similar to cytidine/deoxycytidylate deaminase family protein [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 141.4 bits (355), Expect = 4.300e-30
Identity = 85/172 (49.42%), Postives = 107/172 (62.21%), Query Frame = 0
Query:  105 ERFMRLALVEAQAAFAAREIPVGAVLVSSEGQ-------VLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRM-----------LDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQA-PHPFHACLEVRGGVQRDECGALMKRFFAERR 258
            E +MR+AL  A+ A+   E+PVGA+LV   G        +LA GRNR+E   DA+AHAE+ECLRAAS    RL +  WR+              TLY TLEPC MCL A+Q  RV R+VYGAP + LGAIESY+ +L  A PHPFH   E+  GV  +E  +L++RFF ERR
Sbjct:  122 EHYMRMALALAEEAYTNNEVPVGALLVVRNGPETDAPDVILARGRNRIEECCDATAHAEIECLRAAS---ARLRS--WRLNRAGSRDHPVPYHVTLYCTLEPCAMCLSAMQLARVTRLVYGAPGLRLGAIESYVPLLTVAPPHPFHRFSEIIPGVLANESASLLRRFFRERR 288          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: CBJ27558.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 140.6 bits (353), Expect = 7.400e-30
Identity = 82/187 (43.85%), Postives = 114/187 (60.96%), Query Frame = 0
Query:   84 HSQATSMNSTTTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSS-------EGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSKIL 264
            HS+A   N  + +    ++ D+RFMR+AL  A  A    E+P+GA+L  +         +VL+TGRN VE   DASAHAE+ CL+AA+      A  +WR+  +TLYVT+EPC MCL A Q FRV R+V+GAPN  LGA   ++ +  Q  H FH  LEV+GGV  +EC   ++ FF  RR + +I+
Sbjct:  315 HSKAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAK-----ARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQR-HAFHE-LEVKGGVLAEECALPLRGFFRSRRREGEIV 494          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: XP_005849638.1 (hypothetical protein CHLNCDRAFT_20896, partial [Chlorella variabilis] >EFN57536.1 hypothetical protein CHLNCDRAFT_20896, partial [Chlorella variabilis])

HSP 1 Score: 140.2 bits (352), Expect = 9.600e-30
Identity = 84/161 (52.17%), Postives = 98/161 (60.87%), Query Frame = 0
Query:   97 TASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERR 258
            TA  DD DERFMRLAL +A+ AF   E+PVGAVLVS  GQVLA  RN  E   D +AHAEL C+R A+      A G WR+LD+TLYVTLEPC MC GA+   R   +  G   +   A  +   V    PHPFH  + VR GV   ECG LM+ FFA RR
Sbjct:    2 TAPHDD-DERFMRLALEQARLAFDDGEVPVGAVLVSGGGQVLAAARNAAEGAADPTAHAELLCIRQAA-----TAAGGWRLLDATLYVTLEPCPMCAGALLQVRRAGLCSGVEQLQ-AAPAAAAAVQPTRPHPFHPNMVVRRGVLAAECGDLMRSFFARRR 155          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: XP_005708495.1 (tRNA-specific adenosine deaminase [Galdieria sulphuraria] >EME31975.1 tRNA-specific adenosine deaminase [Galdieria sulphuraria])

HSP 1 Score: 139.0 bits (349), Expect = 2.100e-29
Identity = 73/157 (46.50%), Postives = 105/157 (66.88%), Query Frame = 0
Query:  105 ERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSK 262
            E FMR+AL  A+ +F   E+P+GA+LV ++G+V+A GRN+VE T D + HAEL+C++AA+        G+WR+L++TLY TLEPC MCL A+Q  RV  IVYGA +  LGAIES+   L Q  HP+H    + GG+  +EC   +++FF+  R   +
Sbjct:   10 EYFMRIALELAKQSFYQGEVPIGAILVDAKGKVIAKGRNQVETTKDPTQHAELQCIQAATRVC-----GNWRLLNTTLYSTLEPCAMCLSALQLARVSFIVYGAKDFRLGAIESWYP-LVQVKHPYHRITHM-GGILEEECAEWIQKFFSNIRTNKR 159          
BLAST of NO02G01810 vs. NCBI_GenBank
Match: XP_005717166.1 (unnamed protein product [Chondrus crispus] >CDF37347.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 137.9 bits (346), Expect = 4.800e-29
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 0
Query:  108 MRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSK 262
            MR AL +A+ A++  E+PVGAVLV S G VL+   N VE+  D +AHAE+ C+R A+      A G+WR+ D+TLY TLEPC MCL A+   RV  IVY A ++ LGA  +++  L +  HPFH   +VRGGV  DE   LM+ FF ERR + K
Sbjct:   21 MRYALAQARRAYSLGEVPVGAVLVCSSGAVLSAAHNLVESLHDPTAHAEILCVRRAA-----AAAGNWRLHDTTLYSTLEPCPMCLSALALARVGAIVYAAKDLRLGACGTWLP-LHEEKHPFHTFRDVRGGVLEDEAAELMRHFFRERRAEGK 168          
The following BLAST results are available for this feature:
BLAST of NO02G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856209.16.400e-6662.78trna-specific adenosine deaminase [Nannochloropsis... [more]
EWM30484.16.400e-6662.78trna-specific adenosine deaminase [Nannochloropsis... [more]
CEM35424.12.300e-3148.13unnamed protein product [Vitrella brassicaformis C... [more]
OAE35778.13.300e-3044.44hypothetical protein AXG93_3524s1130 [Marchantia p... [more]
PTQ35363.13.300e-3044.44hypothetical protein MARPO_0072s0096 [Marchantia p... [more]
XP_005538889.14.300e-3049.42similar to cytidine/deoxycytidylate deaminase fami... [more]
CBJ27558.17.400e-3043.85conserved unknown protein [Ectocarpus siliculosus][more]
XP_005849638.19.600e-3052.17hypothetical protein CHLNCDRAFT_20896, partial [Ch... [more]
XP_005708495.12.100e-2946.50tRNA-specific adenosine deaminase [Galdieria sulph... [more]
XP_005717166.14.800e-2948.70unnamed protein product [Chondrus crispus] >CDF373... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006810NSK006810Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01810.1NO02G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574059gene_765Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g20gene188Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01810.1NO02G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01810 ID=NO02G01810|Name=NO02G01810|organism=Nannochloropsis oceanica|type=gene|length=977bp
TGGTTGTCATTGTGTCCTGCCGTGCATAGCAGGCAGGAGGTTTGTCCCGG
CATATTTACAGCAGCAGCGTTGGACGTGTGTCTTAAGTGTGTAATGCTGT
GTTTTTTGACAGTTTTGAATGCGATGGGCCTGTACACCGATGACTAGATG
TGCACCCTCGGTTGTCACCTTCCGCAAATCACGCAACGCCGCACAACCGA
CACACCGCAAAGGCAGCATGAGCGTCAAGAGAAGGGAAAGACCTTCACGA
CCATATATACCTAGTACCTACGCCGTCATGGTCCTATCTCTCCTTTTGCT
GTCGACCTCCTCTCCCTTCGTAATTCCGGCCTCTCGTCCACGTTCCCACG
ACATTTCAGCATGCTGCCATTCCCAGGCAACCTCCATGAACTCCACGACG
ACAATGACTGCAAGCCTTGATGACGCCGATGAACGCTTCATGAGGCTGGC
GCTGGTCGAGGCGCAAGCAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCG
CTGTCCTCGTTTCGAGCGAGGGTCAGGTCTTGGCAACGGGGCGCAATCGT
GTCGAGGCCACCGGAGACGCAAGTGCGCATGCAGAGCTTGAATGCTTGCG
GGCAGCCTCCCATTGCACAGACCGTCTGGCGAACGGCCACTGGCGCATGC
TGGATAGCACGCTTTACGTGACCTTGGAACCGTGCCTCATGTGCTTGGGT
GCCGTGCAGAGCTTTCGGGTGAAACGCATCGTGTATGGAGCACCAAATAT
AATGCTGGGGGCTATTGAGAGTTATATCAAGGTATTGGAGCAAGCACCAC
ATCCTTTTCATGCTTGTCTGGAGGTACGTGGGGGCGTACAGAGAGACGAA
TGCGGTGCATTGATGAAGCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAA
GATACTGGTTGAGAAAGAACGAGAGAGAGACAAAATTGTATGATGAGCAC
ATACTCAAAAGAAGTATTATGTACGGT
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protein sequence of NO02G01810.1

>NO02G01810.1-protein ID=NO02G01810.1-protein|Name=NO02G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MRWACTPMTRCAPSVVTFRKSRNAAQPTHRKGSMSVKRRERPSRPYIPST
YAVMVLSLLLLSTSSPFVIPASRPRSHDISACCHSQATSMNSTTTMTASL
DDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGD
ASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFR
VKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMK
RFFAERRLQSKILVEKERERDKIV*
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Synonyms
Publications