NO02G01810.1, NO02G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01810.1
Unique NameNO02G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length977
Alignment locationchr2:528107..529083 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:528107..529083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01810.1 vs.
Match: XP_005856209.1 (trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526]; EKU20159.1 trna-specific adenosine deaminase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.4 bits (664), Expect = 6.400e-66
Identity = 140/223 (62.78%), Postives = 171/223 (76.68%), Query Frame = 0 
Query:   55 VLSLLLLSTSSPFVIPASRPRSHDISACC-----HSQATSMNSTTTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMKRFFAERRLQSKILVEKERERDK 273
            V  L LLS   P ++P     +H     C     H+++ ++NS +T  +  ++ DE++M LAL+EAQAAFAA+E+PVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAA+    R   G WRML+ TLYVTLEPCLMCLGAVQSFRV+R+VYGA + +LGAIESY+KVLEQAPHPFH+ LEV+GGV   +CG LMKRFFAERRL+S+ +  K RE  +
Sbjct:   12 VTFLALLSLLCPILLP-----THAFLHTCRLSSPHARSFAVNSISTSASLRENQDEKYMALALIEAQAAFAAKEVPVGAVLVSSEGQVLATGRNRVEATGDASAHAELECLRAAALGAARHGQGKWRMLNCTLYVTLEPCLMCLGAVQSFRVQRVVYGARSTLLGAIESYVKVLEQAPHPFHSTLEVKGGVHAAQCGDLMKRFFAERRLESERMATKVREAQR 229
The following BLAST results are available for this feature:
BLAST of NO02G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856209.16.400e-6662.78trna-specific adenosine deaminase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01810NO02G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01810.1NO02G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01810.1.cds1NO02G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01810.1 ID=NO02G01810.1|Name=NO02G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=977bp
TGGTTGTCATTGTGTCCTGCCGTGCATAGCAGGCAGGAGGTTTGTCCCGG
CATATTTACAGCAGCAGCGTTGGACGTGTGTCTTAAGTGTGTAATGCTGT
GTTTTTTGACAGTTTTGAATGCGATGGGCCTGTACACCGATGACTAGATG
TGCACCCTCGGTTGTCACCTTCCGCAAATCACGCAACGCCGCACAACCGA
CACACCGCAAAGGCAGCATGAGCGTCAAGAGAAGGGAAAGACCTTCACGA
CCATATATACCTAGTACCTACGCCGTCATGGTCCTATCTCTCCTTTTGCT
GTCGACCTCCTCTCCCTTCGTAATTCCGGCCTCTCGTCCACGTTCCCACG
ACATTTCAGCATGCTGCCATTCCCAGGCAACCTCCATGAACTCCACGACG
ACAATGACTGCAAGCCTTGATGACGCCGATGAACGCTTCATGAGGCTGGC
GCTGGTCGAGGCGCAAGCAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCG
CTGTCCTCGTTTCGAGCGAGGGTCAGGTCTTGGCAACGGGGCGCAATCGT
GTCGAGGCCACCGGAGACGCAAGTGCGCATGCAGAGCTTGAATGCTTGCG
GGCAGCCTCCCATTGCACAGACCGTCTGGCGAACGGCCACTGGCGCATGC
TGGATAGCACGCTTTACGTGACCTTGGAACCGTGCCTCATGTGCTTGGGT
GCCGTGCAGAGCTTTCGGGTGAAACGCATCGTGTATGGAGCACCAAATAT
AATGCTGGGGGCTATTGAGAGTTATATCAAGGTATTGGAGCAAGCACCAC
ATCCTTTTCATGCTTGTCTGGAGGTACGTGGGGGCGTACAGAGAGACGAA
TGCGGTGCATTGATGAAGCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAA
GATACTGGTTGAGAAAGAACGAGAGAGAGACAAAATTGTATGATGAGCAC
ATACTCAAAAGAAGTATTATGTACGGT
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protein sequence of NO02G01810.1

>NO02G01810.1-protein ID=NO02G01810.1-protein|Name=NO02G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MRWACTPMTRCAPSVVTFRKSRNAAQPTHRKGSMSVKRRERPSRPYIPST
YAVMVLSLLLLSTSSPFVIPASRPRSHDISACCHSQATSMNSTTTMTASL
DDADERFMRLALVEAQAAFAAREIPVGAVLVSSEGQVLATGRNRVEATGD
ASAHAELECLRAASHCTDRLANGHWRMLDSTLYVTLEPCLMCLGAVQSFR
VKRIVYGAPNIMLGAIESYIKVLEQAPHPFHACLEVRGGVQRDECGALMK
RFFAERRLQSKILVEKERERDKIV*
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mRNA from alignment at chr2:528107..529083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01810.1 ID=NO02G01810.1|Name=NO02G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=977bp|location=Sequence derived from alignment at chr2:528107..529083+ (Nannochloropsis oceanica)
TGGTTGTCATTGTGTCCTGCCGTGCATAGCAGGCAGGAGGTTTGTCCCGG
CATATTTACAGCAGCAGCGTTGGACGTGTGTCTTAAGTGTGTAATGCTGT
GTTTTTTGACAGTTTTGAATGCGATGGGCCTGTACACCGATGACTAGATG
TGCACCCTCGGTTGTCACCTTCCGCAAATCACGCAACGCCGCACAACCGA
CACACCGCAAAGGCAGCATGAGCGTCAAGAGAAGGGAAAGACCTTCACGA
CCATATATACCTAGTACCTACGCCGTCATGGTCCTATCTCTCCTTTTGCT
GTCGACCTCCTCTCCCTTCGTAATTCCGGCCTCTCGTCCACGTTCCCACG
ACATTTCAGCATGCTGCCATTCCCAGGCAACCTCCATGAACTCCACGACG
ACAATGACTGCAAGCCTTGATGACGCCGATGAACGCTTCATGAGGCTGGC
GCTGGTCGAGGCGCAAGCAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCG
CTGTCCTCGTTTCGAGCGAGGGTCAGGTCTTGGCAACGGGGCGCAATCGT
GTCGAGGCCACCGGAGACGCAAGTGCGCATGCAGAGCTTGAATGCTTGCG
GGCAGCCTCCCATTGCACAGACCGTCTGGCGAACGGCCACTGGCGCATGC
TGGATAGCACGCTTTACGTGACCTTGGAACCGTGCCTCATGTGCTTGGGT
GCCGTGCAGAGCTTTCGGGTGAAACGCATCGTGTATGGAGCACCAAATAT
AATGCTGGGGGCTATTGAGAGTTATATCAAGGTATTGGAGCAAGCACCAC
ATCCTTTTCATGCTTGTCTGGAGGTACGTGGGGGCGTACAGAGAGACGAA
TGCGGTGCATTGATGAAGCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAA
GATACTGGTTGAGAAAGAACGAGAGAGAGACAAAATTGTATGATGAGCAC
ATACTCAAAAGAAGTATTATGTACGGT
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Coding sequence (CDS) from alignment at chr2:528107..529083+

>NO02G01810.1 ID=NO02G01810.1|Name=NO02G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr2:528107..529083+ (Nannochloropsis oceanica)
ATGCGATGGGCCTGTACACCGATGACTAGATGTGCACCCTCGGTTGTCAC
CTTCCGCAAATCACGCAACGCCGCACAACCGACACACCGCAAAGGCAGCA
TGAGCGTCAAGAGAAGGGAAAGACCTTCACGACCATATATACCTAGTACC
TACGCCGTCATGGTCCTATCTCTCCTTTTGCTGTCGACCTCCTCTCCCTT
CGTAATTCCGGCCTCTCGTCCACGTTCCCACGACATTTCAGCATGCTGCC
ATTCCCAGGCAACCTCCATGAACTCCACGACGACAATGACTGCAAGCCTT
GATGACGCCGATGAACGCTTCATGAGGCTGGCGCTGGTCGAGGCGCAAGC
AGCCTTCGCTGCCCGTGAGATCCCGGTAGGCGCTGTCCTCGTTTCGAGCG
AGGGTCAGGTCTTGGCAACGGGGCGCAATCGTGTCGAGGCCACCGGAGAC
GCAAGTGCGCATGCAGAGCTTGAATGCTTGCGGGCAGCCTCCCATTGCAC
AGACCGTCTGGCGAACGGCCACTGGCGCATGCTGGATAGCACGCTTTACG
TGACCTTGGAACCGTGCCTCATGTGCTTGGGTGCCGTGCAGAGCTTTCGG
GTGAAACGCATCGTGTATGGAGCACCAAATATAATGCTGGGGGCTATTGA
GAGTTATATCAAGGTATTGGAGCAAGCACCACATCCTTTTCATGCTTGTC
TGGAGGTACGTGGGGGCGTACAGAGAGACGAATGCGGTGCATTGATGAAG
CGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAAGATACTGGTTGAGAAAGA
ACGAGAGAGAGACAAAATTGTATGA
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Synonyms
Publications