NO02G01780, NO02G01780 (gene) Nannochloropsis oceanica

Overview
NameNO02G01780
Unique NameNO02G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1746
Alignment locationchr2:520698..522443 -

Link to JBrowse

Properties
Property NameValue
DescriptionQa-syp4 tlg2p syntaxin 16-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:520698..522443 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of NO02G01780 vs. NCBI_GenBank
Match: OQR82056.1 (syntaxin [Thraustotheca clavata])

HSP 1 Score: 171.4 bits (433), Expect = 4.500e-39
Identity = 114/292 (39.04%), Postives = 165/292 (56.51%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT--TAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR +V  R+   AK+  R  +     +   + L+ +A    +     A++Q  PAWVD V  V+   A+++  M++L  +H KRL+V FD SE+  ER+I+ +T EIT+ FR AE ILK    G+      +    +NVQ+++A ++Q LS +FRK+QK Y+ ++K Q+ G      F+FLS            E K  +  G++GGF   QLA +E  E +  ERD+E+Q IA                VIDQGT+LDRID+NMEQVVE T+ GV +L +AE  Q
Sbjct:    1 MATRDLTRTYVALRSDVKAKVARRRQMVSADVHMEGNSLMRNAEMRSDLE-GTAKMQGAPAWVDAVTDVNIHIARIKHLMEKLGKIHTKRLMVRFDGSESEHEREIESITGEITSEFRSAERILKAKMNGKDGISEADAKTRQNVQRALATQLQTLSADFRKSQKEYLDRVKNQRQGPAE---FEFLS------------EPKKTKTSGLDGGFMQAQLAEVELAEDLINERDREVQQIATXXXXXXXXXXXXXXXVIDQGTILDRIDYNMEQVVERTQAGVVELEKAETIQ 276          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: OEU17684.1 (t-SNARE [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 168.7 bits (426), Expect = 2.900e-38
Identity = 101/228 (44.30%), Postives = 141/228 (61.84%), Query Frame = 0
Query:   55 QLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQ 283
            Q  P WV  VD+V  +   +   M++L +LH  R+   F       E  I+ MT+++T  FR AE ILKQ+G   R  GG E  +  N+Q+S+AK++Q LS++FR++Q+ Y+A+++AQK+G      FD   A        +++     EEGG    FT +Q+ V+++ +     RDQEI  IA+SIEEL  IFKELAVLVIDQGT+LDRID+NME VVE TK GV Q
Sbjct:   11 QKQPTWVVDVDQVKLILQDIRRLMEDLRSLHASRVGSVFGKDLDDMEIRIETMTRDVTDKFRRAERILKQVGTATRRAGGEEAAIGANIQRSLAKQLQELSVDFRQSQRKYLAEVRAQKSG------FDITGATSNDHFAGIDLS---TEEGGF---FTTQQVQVVDDLQEAIGSRDQEISKIAQSIEELGTIFKELAVLVIDQGTILDRIDYNMEAVVESTKTGVTQ 226          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: BAS01249.1 (syntaxin of plant 4 [Marchantia polymorpha] >PTQ39995.1 hypothetical protein MARPO_0042s0041 [Marchantia polymorpha])

HSP 1 Score: 166.8 bits (421), Expect = 1.100e-37
Identity = 110/308 (35.71%), Postives = 176/308 (57.14%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAK-------IIGRNSL---------SPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGG--IEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATR+ T  F  YR   +       + GR S          +P  G    +   ED +     G  +  + LPPAWVD+ D V     ++++KM EL   H + L+V FDD+   +++ I+ +T EIT + ++ E  L++L GG+ + G  +  + +NVQ+S+A  +Q LS++FRK QK Y+ +L+ Q+AG  GA      S            +++ RE+     + GF+  QL+ L++ EA++AER++EI  I  S+ +L+QI K+L+VLVIDQGT++DRID+N+  V    ++GV +LV+AEE Q
Sbjct:    1 MATRNQTALFKKYRDALRNVRPGPSVAGRGSSIELTEVFPGAPQRGRGYSTLSTEDDSDPTRAG--SISVSLPPAWVDISDEVSTEMNKVKSKMAELAKSHGRALMVSFDDN-TGEQQTIELLTAEITRSLKKCEQKLQRLSGGQGNSG--DENLRKNVQRSLATDLQSLSMDFRKLQKGYLGKLRLQEAGQSGADISMGFS------------QQRSREDDDEFSDVGFSTTQLSQLKQNEAMSAEREREITQIVESVNDLAQIMKDLSVLVIDQGTIVDRIDYNITNVSASVEQGVRELVKAEETQ 291          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: XP_008603887.1 (hypothetical protein SDRG_00198 [Saprolegnia diclina VS20] >XP_012205784.1 hypothetical protein SPRG_11392 [Saprolegnia parasitica CBS 223.65] >XP_012212015.1 hypothetical protein SPRG_17267 [Saprolegnia parasitica CBS 223.65] >EQC42464.1 hypothetical protein SDRG_00198 [Saprolegnia diclina VS20] >KDO17277.1 hypothetical protein SPRG_17267 [Saprolegnia parasitica CBS 223.65] >KDO23469.1 hypothetical protein SPRG_11392 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 165.6 bits (418), Expect = 2.500e-37
Identity = 111/292 (38.01%), Postives = 159/292 (54.45%), Query Frame = 0
Query:    1 MATRDLTRKFVDYR--TTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR +V  R    AK+  R  +     +   + L+ +  R       A      PAWVD V  V+   A+++  M++L  +H KRL+V FD SE+  ER+I+ +T EIT  FR AE ILK    G+      +    +NVQ+++A ++Q LS +FRK+QK Y+ ++K Q+ G      F+FLS            E K  +  G++GGF   Q+A +E  E +  ERD+E+Q IA                VIDQGT+LDRID+NMEQVVE T+ G+ +L +AE  Q
Sbjct:    1 MATRDLTRTYVALRKDVKAKVARRRQMVSPDVHMEGNSLIRNDMRSDLDVEMAKTAGPTPAWVDAVTDVNIHIARVKLLMEKLGKMHTKRLMVRFDGSESDHEREIESITGEITGEFRNAERILKAKMNGKDGVSEADAKARQNVQRALATQLQSLSADFRKSQKEYLDRVKNQRQGPAE---FEFLS------------ETKKTKTSGLDGGFMQAQMAEVELAEDLINERDREVQQIATXXXXXXXXXXXXXXXVIDQGTILDRIDYNMEQVVERTQAGIVELEKAETIQ 277          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: OWZ08393.1 (Syntaxin [Phytophthora megakarya])

HSP 1 Score: 164.1 bits (414), Expect = 7.200e-37
Identity = 107/275 (38.91%), Postives = 159/275 (57.82%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT--TAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSE--GGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQ 272
            MATRDLTR+F+  R    AK++ R ++  +S     + L++ A  +      A  + + P WVD+V+  +   A+++  M++L  LH  RL+V FD SE+  E++ID+MTQEIT  FR AE  L+++   +R+      +    +NVQ+++A ++Q LS++FRK+QK Y+A++K QK    G   FDFL+          E + K +  GG + GFT  Q+  +E  E V  ERD EIQ IA SI E            IDQGT+LDRID+NMEQ
Sbjct:    1 MATRDLTRQFLQLRADEKAKVLRRKNI--VSHREEGNALMKSAELE------ATSVAIAPGWVDVVNGTNQHVARIKEMMEKLNKLHTSRLMVRFDGSESRYEQEIDHMTQEITEEFRSAEKGLRRMAQSDRNGEFSAADAKTRQNVQRALATQLQTLSVDFRKSQKTYLARVKNQKE---GPVEFDFLA----------ENDAKQKRRGGADTGFTQAQITEVEIAEDVINERDHEIQRIATSITEXXXXXXXXXXXXIDQGTILDRIDYNMEQ 254          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: PKK70457.1 (t-SNARE [Rhizophagus irregularis])

HSP 1 Score: 163.7 bits (413), Expect = 9.400e-37
Identity = 112/300 (37.33%), Postives = 170/300 (56.67%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKIIGRNSLSPL---SGY-----TMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSE--GGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATR+ T  F+ YR T     RN   PL   SGY     +  +GL+E ++             LPP W+D+VD VD    Q++  +  LE+LH+K +L GFDD    +E++I+ +T EIT  F++ +S +K++     S      ER +++N+Q S+A ++Q LS  FRK Q  Y+ +LK ++  + G+ FF               IE     E  +E GFT  QLA +E  EAV ++R++EI  IA+SI  +++IF+EL  LVIDQGT+LDRID+N+EQ+  + K  V +L +  + Q
Sbjct:    1 MATRNRTLLFLKYRNT---FARNHSRPLATSSGYDAYNTSEQAGLIESSDH------VIELTVLPPKWIDIVDEVDDDIDQIKNLLPTLESLHKKHILPGFDD-RTKEEKEIERLTDEITHLFQQCQSKIKRIANESLSSIAPNQERAMSKNIQTSLASKLQELSSSFRKQQASYLKKLKGRE--SKGSKFF--------------LIESNDSNEDDLELGFTSSQLARVESSEAVISQREREIIEIAKSIHTIAEIFRELQSLVIDQGTLLDRIDYNVEQMSVNVKSAVRELDKGAQYQ 274          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: EXX70536.1 (Tlg2p [Rhizophagus irregularis DAOM 197198w] >EXX70537.1 Tlg2p [Rhizophagus irregularis DAOM 197198w] >GBC53836.1 T-SNARE [Rhizophagus irregularis DAOM 181602] >PKC02775.1 t-SNARE [Rhizophagus irregularis] >PKC14328.1 t-SNARE [Rhizophagus irregularis] >PKC73333.1 t-SNARE [Rhizophagus irregularis] >PKY23628.1 t-SNARE [Rhizophagus irregularis] >PKY47926.1 t-SNARE [Rhizophagus irregularis] >POG75083.1 t-SNARE [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 163.3 bits (412), Expect = 1.200e-36
Identity = 112/300 (37.33%), Postives = 169/300 (56.33%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKIIGRNSLSPL---SGY-----TMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSE--GGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATR  T  F+ YR T     RN   PL   SGY     +  +GL+E ++             LPP W+D+VD VD    Q++  +  LE+LH+K +L GFDD    +E++I+ +T EIT  F++ +S +K++     S      ER +++N+Q S+A ++Q LS  FRK Q  Y+ +LK ++  + G+ FF               IE     E  +E GFT  QLA +E  EAV ++R++EI  IA+SI  +++IF+EL  LVIDQGT+LDRID+N+EQ+  + K  V +L +  + Q
Sbjct:    1 MATRSRTLLFLKYRNT---FARNHSRPLATSSGYDAYNTSEQAGLIESSDH------VIELTVLPPKWIDIVDEVDDDIDQIKNLLPTLESLHKKHILPGFDD-RTKEEKEIERLTDEITHLFQQCQSKIKRIANESLSSIAPNQERAMSKNIQTSLASKLQELSSSFRKQQASYLKKLKGRE--SKGSKFF--------------LIESNDSNEDDLELGFTSSQLARVESSEAVISQREREIIEIAKSIHTIAEIFRELQSLVIDQGTLLDRIDYNVEQMSVNVKSAVRELDKGAQYQ 274          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: OQR93563.1 (syntaxin-like protein [Achlya hypogyna])

HSP 1 Score: 162.2 bits (409), Expect = 2.700e-36
Identity = 112/294 (38.10%), Postives = 163/294 (55.44%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT--TAKIIGRNSLSPLSGYTMD-SGLLEDAN-RDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR +V  RT   AK+  R  +       M+ + L+ +A  R       A +    P WVD V  V+   A+++  M++L  +H KRL+V FD+SE+  ER+I+ +T +IT  FR AE ILK    G+      +    +NVQ+++A ++Q LS +FRK+QK Y+ ++K Q+ G      F+FLS             +K  +  G++GGF   Q+A +E  E +  ERD+E+Q IA                VIDQGT+LDRID+NMEQVVE T+ GV +L +AE  Q
Sbjct:    1 MATRDLTRTYVALRTDVRAKVARRRQMVGSPDVHMEGNSLMRNAEMRSDLDIELAKKAAQTPGWVDAVTDVNIHIARIKLLMEKLGKMHTKRLMVRFDNSESDHEREIESITADITNEFRNAERILKAKMNGKDGVSEADAKARQNVQRALATQLQTLSADFRKSQKEYLDRVKNQRQGPAE---FEFLSE-----------TKKTSKTSGLDGGFMQAQMAEVELAEDLINERDREVQQIATXXXXXXXXXXXXXXXVIDQGTILDRIDYNMEQVVERTQAGVVELEKAETIQ 280          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: XP_002185756.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65226.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 161.4 bits (407), Expect = 4.700e-36
Identity = 101/226 (44.69%), Postives = 136/226 (60.18%), Query Frame = 0
Query:   58 PAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQL 284
            P+WV  VD+V+     L A+M++L  +H  R+   F       E  I+  T+EIT  FR AE IL+++G   R  GG E  V  NVQ+S+AKR+Q LS+ FR++Q+ Y+A+++ QK+G G  P  D              I+      G     FT +QLAV+++       RD EI  IA+SIEEL  IFKELAVLVIDQGT+LDRID+NME VV+HTK G+ QL
Sbjct:    8 PSWVTDVDQVEQCLVDLRAQMEDLHKMHASRVGSVFGKDLEDMEGRIESRTREITDQFRVAERILQKVGVATRRAGGEEATVGANVQRSLAKRLQELSVNFRQSQRKYLAEVRTQKSG-GLVPGAD----------SRFGIDLHTESSGEF---FTTQQLAVVDDLTEAVQSRDTEIVKIAQSIEELGTIFKELAVLVIDQGTILDRIDYNMEAVVDHTKTGIKQL 219          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: OAE29301.1 (hypothetical protein AXG93_3102s1270 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 161.4 bits (407), Expect = 4.700e-36
Identity = 110/320 (34.38%), Postives = 175/320 (54.69%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAK-------IIGRNSL---------SPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFF------------DFLSAXXXXXXXXLEIERKMREEGGI--EGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATR+ T  F  YR   +       + GR S          +P  G    +   ED +     G  +  + LPPAWVD+ D V     ++++KM EL   H + L+V FDD+   +++ I+ +T EIT + ++ E  L++L GG+ + G  +  + +NVQ+S+A  +Q LS++FRK QK Y+ +L+ Q+AG  GA               D  S         + ++ +      I    GF+  QL+ L++ EA++AER++EI  I  S+ +L+QI K+L+VLVIDQGT++DRID+N+  V    ++GV +LV+AEE Q
Sbjct:   89 MATRNQTALFKKYRDALRNVRPGPSVAGRGSSIELTEVFPGAPQRGRGYSTLSTEDDSDPTRAG--SISVSLPPAWVDISDEVSTEMNKVKSKMAELAKSHGRALMVSFDDN-TGEQQTIELLTAEITRSLKKCEQKLQRLSGGQGNSG--DENLRKNVQRSLATDLQSLSMDFRKLQKGYLGKLRLQEAGQSGADISMGFSQQRSREDDDEFSDVMTLPGFVVALKDQWSSPSDILVMQGFSTTQLSQLKQNEAMSAEREREITQIVESVNDLAQIMKDLSVLVIDQGTIVDRIDYNITNVSASVEQGVRELVKAEETQ 403          
The following BLAST results are available for this feature:
BLAST of NO02G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR82056.14.500e-3939.04syntaxin [Thraustotheca clavata][more]
OEU17684.12.900e-3844.30t-SNARE [Fragilariopsis cylindrus CCMP1102][more]
BAS01249.11.100e-3735.71syntaxin of plant 4 [Marchantia polymorpha] >PTQ39... [more]
XP_008603887.12.500e-3738.01hypothetical protein SDRG_00198 [Saprolegnia dicli... [more]
OWZ08393.17.200e-3738.91Syntaxin [Phytophthora megakarya][more]
PKK70457.19.400e-3737.33t-SNARE [Rhizophagus irregularis][more]
EXX70536.11.200e-3637.33Tlg2p [Rhizophagus irregularis DAOM 197198w] >EXX7... [more]
OQR93563.12.700e-3638.10syntaxin-like protein [Achlya hypogyna][more]
XP_002185756.14.700e-3644.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OAE29301.14.700e-3634.38hypothetical protein AXG93_3102s1270 [Marchantia p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006806NSK006806Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01780.1NO02G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574050gene_762Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR4gene185Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01780.1NO02G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01780 ID=NO02G01780|Name=NO02G01780|organism=Nannochloropsis oceanica|type=gene|length=1746bp
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGgtaa
gaacaaaggaagagatgatgtgggagggtgggagggaagtatatgaagtg
tgggtggatgggtagaggatgggagggtggatgtgtagaacggatggaat
tgtgtatcaagagctgataaacgattttgtggctgctgaaaggaagctaa
gccgtagctgggatgggtacgacagaccttacatgcgatcggaaggagcc
gaaaggagggaggaattaattgggtgtgcttcgagaatctctacgagtcg
tcttcggtgtgttgagctcgcctgccacatccttcagaacttacataaat
cttttccattctcactcctcccagATTATTGGCCGCAACTCCCTTTCCCC
CCTCAGTGGCTACACCATGGACAGCGGCTTGTTAGAGGACGCCAACCGCG
ACGGCAATACGGGATGGGCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGG
GTAGACTTAGTTGATCGCGTTGATGCCCTCACAGCGCAGTTGGAAGCGAA
AATGAAAGAATTGGAGGCGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCG
ATGATAGCGAGGCAGCCAAGGAGAGAGACATCGATTACATGACTCAGGAA
ATAACAGCCACGTTCCGGGAGGCCGAATCAATACTAAAACAATTAGGAGG
AGGAGAAAGAAGTGAGGGAGGTACTGAACGAGTGGTCACGCGAAATGTAC
AGAAGAGTATGGCAAAGCGGATACAGGGCTTGTCGATTGAGTTTCGAAAG
ACCCAGAAACATTACATGGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGG
GGGCGCGCCATTTTTTGACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAG
GCTTGTTGGAGATAGAGAGGAAGATGAGGGAGGAGGGAGGGATTGAGGGG
GGATTTACCCCGGAGCAGCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGAC
GGCAGAGAGGGACCAGGAGATACAGCACATTGCCCGAAGCATAGAGGAGT
TGTCACAGATTTTCAAGGAGCTTGCCGTGTTGGTAATTGACCAGGGGACA
GTGCTGGATCGGATTGATTTCAACATGGAGCAGGTGGTTGAGCATACGAA
GGAGGGTGTGCATCAGTTGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTA
AGGCGACGAGGTGCATTGTGTGCTTGTTGTGTGCAATTTTTGTGATGATT
ATCATTCTGATCATCAAGCACAGGTGACGACATTCTCTCGCTTTAGGGTC
TCCTTTCTTTTGCTGCTCGTCCTTTTTGAAATAATATGTTTTCAAATATT
CAAAAATGTAGCCCCCATGTAACAAAATCTGAATGCATGTTTTTTTGGGT
AATTTAAGCGACTGTGTATGGGTGTTCACTATTCGTGACCGTGAGGACTT
TCCTGGTAAACGAAGACATGGATGGCCATGACCACCTTTTTTTTCCTTAC
CAAAAGAAGAAAAGGCACAGCAAAGCGCAAAATAAATTCTCTGCGT
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protein sequence of NO02G01780.1

>NO02G01780.1-protein ID=NO02G01780.1-protein|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWA
AARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAK
ERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKR
IQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIER
KMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKE
LAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIV
CLLCAIFVMIIILIIKHR*
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Synonyms
Publications