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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:520698..522443 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01780.1 vs.
Match: EWM30526.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana]) HSP 1 Score: 508.8 bits (1309), Expect = 1.200e-140 Identity = 271/319 (84.95%), Postives = 291/319 (91.22%), Query Frame = 0
Query: 1 MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQL-GGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCAIFVMIIILIIKHR 319
MATRDLTRK+VDYRTTAKIIGRNSLSPLSGYTMDSGLLEDA++D NTGWAAAR+QLPPAWVDLVDRVD LTAQ+EAKMKELEALHRKRLLVGFDDSEAA+ERDID++TQEIT REAES LKQL GGG GGTE++VTRNVQKSMAKRIQ LSIEFR +QKHYMAQLKAQK+GA AP FDFL+A H LE ER+ REE G+EGGFTPEQLAVLEEQE TAERD+EIQHIARSIEELSQIF+ELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLC+IFVM++ILIIKHR
Sbjct: 1 MATRDLTRKYVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDASQDSNTGWAAARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDDSEAARERDIDFITQEITGMLREAESALKQLGGGGADGGGGTEKLVTRNVQKSMAKRIQALSIEFRASQKHYMAQLKAQKSGA--APLFDFLAAGH----DTLETERRAREENGMEGGFTPEQLAVLEEQEVTTAERDREIQHIARSIEELSQIFRELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCSIFVMVLILIIKHR 313
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGATTA TTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGGACAGCGGC TTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCCGCTGCTCG TTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGTTGATGCCC TCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGTTGCATCGG AAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAGGAGAGAGA CATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGAGGCCGAAT CAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAGGTACTGAA CGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGGATACAGGG CTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGCGCAGCTGA AAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACTTTTTGTCA GCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGGAAGATGAG GGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCTAGCGGTGT TGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGATACAGCAC ATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAGCTTGCCGT GTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTTCAACATGG AGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGGTGAGGGCG GAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTGTGCTTGTT GTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCACAGGTGAC GACATTCTCTCGCTTTAGGGTCTCCTTTCTTTTGCTGCTCGTCCTTTTTG AAATAATATGTTTTCAAATATTCAAAAATGTAGCCCCCATGTAACAAAAT CTGAATGCATGTTTTTTTGGGTAATTTAAGCGACTGTGTATGGGTGTTCA CTATTCGTGACCGTGAGGACTTTCCTGGTAAACGAAGACATGGATGGCCA TGACCACCTTTTTTTTCCTTACCAAAAGAAGAAAAGGCACAGCAAAGCGC AAAATAAATTCTCTGCGT back to topprotein sequence of NO02G01780.1 >NO02G01780.1-protein ID=NO02G01780.1-protein|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWA AARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAK ERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKR IQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIER KMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKE LAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIV CLLCAIFVMIIILIIKHR* back to topmRNA from alignment at chr2:520698..522443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at chr2:520698..522443- (Nannochloropsis oceanica) AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGGTAA
GAACAAAGGAAGAGATGATGTGGGAGGGTGGGAGGGAAGTATATGAAGTG
TGGGTGGATGGGTAGAGGATGGGAGGGTGGATGTGTAGAACGGATGGAAT
TGTGTATCAAGAGCTGATAAACGATTTTGTGGCTGCTGAAAGGAAGCTAA
GCCGTAGCTGGGATGGGTACGACAGACCTTACATGCGATCGGAAGGAGCC
GAAAGGAGGGAGGAATTAATTGGGTGTGCTTCGAGAATCTCTACGAGTCG
TCTTCGGTGTGTTGAGCTCGCCTGCCACATCCTTCAGAACTTACATAAAT
CTTTTCCATTCTCACTCCTCCCAGATTATTGGCCGCAACTCCCTTTCCCC
CCTCAGTGGCTACACCATGGACAGCGGCTTGTTAGAGGACGCCAACCGCG
ACGGCAATACGGGATGGGCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGG
GTAGACTTAGTTGATCGCGTTGATGCCCTCACAGCGCAGTTGGAAGCGAA
AATGAAAGAATTGGAGGCGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCG
ATGATAGCGAGGCAGCCAAGGAGAGAGACATCGATTACATGACTCAGGAA
ATAACAGCCACGTTCCGGGAGGCCGAATCAATACTAAAACAATTAGGAGG
AGGAGAAAGAAGTGAGGGAGGTACTGAACGAGTGGTCACGCGAAATGTAC
AGAAGAGTATGGCAAAGCGGATACAGGGCTTGTCGATTGAGTTTCGAAAG
ACCCAGAAACATTACATGGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGG
GGGCGCGCCATTTTTTGACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAG
GCTTGTTGGAGATAGAGAGGAAGATGAGGGAGGAGGGAGGGATTGAGGGG
GGATTTACCCCGGAGCAGCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGAC
GGCAGAGAGGGACCAGGAGATACAGCACATTGCCCGAAGCATAGAGGAGT
TGTCACAGATTTTCAAGGAGCTTGCCGTGTTGGTAATTGACCAGGGGACA
GTGCTGGATCGGATTGATTTCAACATGGAGCAGGTGGTTGAGCATACGAA
GGAGGGTGTGCATCAGTTGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTA
AGGCGACGAGGTGCATTGTGTGCTTGTTGTGTGCAATTTTTGTGATGATT
ATCATTCTGATCATCAAGCACAGGTGACGACATTCTCTCGCTTTAGGGTC
TCCTTTCTTTTGCTGCTCGTCCTTTTTGAAATAATATGTTTTCAAATATT
CAAAAATGTAGCCCCCATGTAACAAAATCTGAATGCATGTTTTTTTGGGT
AATTTAAGCGACTGTGTATGGGTGTTCACTATTCGTGACCGTGAGGACTT
TCCTGGTAAACGAAGACATGGATGGCCATGACCACCTTTTTTTTCCTTAC
CAAAAGAAGAAAAGGCACAGCAAAGCGCAAAATAAATTCTCTGCGT back to topCoding sequence (CDS) from alignment at chr2:520698..522443- >NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr2:520698..522443- (Nannochloropsis oceanica) ATGGCGACGCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGC CAAGATTATTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGG ACAGCGGCTTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCC GCTGCTCGTTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGT TGATGCCCTCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGT TGCATCGGAAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAG GAGAGAGACATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGA GGCCGAATCAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAG GTACTGAACGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGG ATACAGGGCTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGC GCAGCTGAAAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACT TTTTGTCAGCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGG AAGATGAGGGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCT AGCGGTGTTGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGA TACAGCACATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAG CTTGCCGTGTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTT CAACATGGAGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGG TGAGGGCGGAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTG TGCTTGTTGTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCA CAGGTGA back to top
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