NO02G01780.1, NO02G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01780.1
Unique NameNO02G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1418
Alignment locationchr2:520698..522443 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:520698..522443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01780.1 vs.
Match: EWM30526.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana])

HSP 1 Score: 508.8 bits (1309), Expect = 1.200e-140
Identity = 271/319 (84.95%), Postives = 291/319 (91.22%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQL-GGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCAIFVMIIILIIKHR 319
            MATRDLTRK+VDYRTTAKIIGRNSLSPLSGYTMDSGLLEDA++D NTGWAAAR+QLPPAWVDLVDRVD LTAQ+EAKMKELEALHRKRLLVGFDDSEAA+ERDID++TQEIT   REAES LKQL GGG    GGTE++VTRNVQKSMAKRIQ LSIEFR +QKHYMAQLKAQK+GA  AP FDFL+A H      LE ER+ REE G+EGGFTPEQLAVLEEQE  TAERD+EIQHIARSIEELSQIF+ELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLC+IFVM++ILIIKHR
Sbjct:    1 MATRDLTRKYVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDASQDSNTGWAAARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDDSEAARERDIDFITQEITGMLREAESALKQLGGGGADGGGGTEKLVTRNVQKSMAKRIQALSIEFRASQKHYMAQLKAQKSGA--APLFDFLAAGH----DTLETERRAREENGMEGGFTPEQLAVLEEQEVTTAERDREIQHIARSIEELSQIFRELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIVCLLCSIFVMVLILIIKHR 313          
The following BLAST results are available for this feature:
BLAST of NO02G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30526.11.200e-14084.95qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01780NO02G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01780.1NO02G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01780.1.cds1NO02G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01780.1.cds2NO02G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGATTA
TTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGGACAGCGGC
TTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCCGCTGCTCG
TTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGTTGATGCCC
TCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGTTGCATCGG
AAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAGGAGAGAGA
CATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGAGGCCGAAT
CAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAGGTACTGAA
CGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGGATACAGGG
CTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGCGCAGCTGA
AAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACTTTTTGTCA
GCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGGAAGATGAG
GGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCTAGCGGTGT
TGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGATACAGCAC
ATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAGCTTGCCGT
GTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTTCAACATGG
AGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGGTGAGGGCG
GAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTGTGCTTGTT
GTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCACAGGTGAC
GACATTCTCTCGCTTTAGGGTCTCCTTTCTTTTGCTGCTCGTCCTTTTTG
AAATAATATGTTTTCAAATATTCAAAAATGTAGCCCCCATGTAACAAAAT
CTGAATGCATGTTTTTTTGGGTAATTTAAGCGACTGTGTATGGGTGTTCA
CTATTCGTGACCGTGAGGACTTTCCTGGTAAACGAAGACATGGATGGCCA
TGACCACCTTTTTTTTCCTTACCAAAAGAAGAAAAGGCACAGCAAAGCGC
AAAATAAATTCTCTGCGT
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protein sequence of NO02G01780.1

>NO02G01780.1-protein ID=NO02G01780.1-protein|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWA
AARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAK
ERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKR
IQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIER
KMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKE
LAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIV
CLLCAIFVMIIILIIKHR*
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mRNA from alignment at chr2:520698..522443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at chr2:520698..522443- (Nannochloropsis oceanica)
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGGTAA GAACAAAGGAAGAGATGATGTGGGAGGGTGGGAGGGAAGTATATGAAGTG TGGGTGGATGGGTAGAGGATGGGAGGGTGGATGTGTAGAACGGATGGAAT TGTGTATCAAGAGCTGATAAACGATTTTGTGGCTGCTGAAAGGAAGCTAA GCCGTAGCTGGGATGGGTACGACAGACCTTACATGCGATCGGAAGGAGCC GAAAGGAGGGAGGAATTAATTGGGTGTGCTTCGAGAATCTCTACGAGTCG TCTTCGGTGTGTTGAGCTCGCCTGCCACATCCTTCAGAACTTACATAAAT CTTTTCCATTCTCACTCCTCCCAGATTATTGGCCGCAACTCCCTTTCCCC CCTCAGTGGCTACACCATGGACAGCGGCTTGTTAGAGGACGCCAACCGCG ACGGCAATACGGGATGGGCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGG GTAGACTTAGTTGATCGCGTTGATGCCCTCACAGCGCAGTTGGAAGCGAA AATGAAAGAATTGGAGGCGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCG ATGATAGCGAGGCAGCCAAGGAGAGAGACATCGATTACATGACTCAGGAA ATAACAGCCACGTTCCGGGAGGCCGAATCAATACTAAAACAATTAGGAGG AGGAGAAAGAAGTGAGGGAGGTACTGAACGAGTGGTCACGCGAAATGTAC AGAAGAGTATGGCAAAGCGGATACAGGGCTTGTCGATTGAGTTTCGAAAG ACCCAGAAACATTACATGGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGG GGGCGCGCCATTTTTTGACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAG GCTTGTTGGAGATAGAGAGGAAGATGAGGGAGGAGGGAGGGATTGAGGGG GGATTTACCCCGGAGCAGCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGAC GGCAGAGAGGGACCAGGAGATACAGCACATTGCCCGAAGCATAGAGGAGT TGTCACAGATTTTCAAGGAGCTTGCCGTGTTGGTAATTGACCAGGGGACA GTGCTGGATCGGATTGATTTCAACATGGAGCAGGTGGTTGAGCATACGAA GGAGGGTGTGCATCAGTTGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTA AGGCGACGAGGTGCATTGTGTGCTTGTTGTGTGCAATTTTTGTGATGATT ATCATTCTGATCATCAAGCACAGGTGACGACATTCTCTCGCTTTAGGGTC TCCTTTCTTTTGCTGCTCGTCCTTTTTGAAATAATATGTTTTCAAATATT CAAAAATGTAGCCCCCATGTAACAAAATCTGAATGCATGTTTTTTTGGGT AATTTAAGCGACTGTGTATGGGTGTTCACTATTCGTGACCGTGAGGACTT TCCTGGTAAACGAAGACATGGATGGCCATGACCACCTTTTTTTTCCTTAC CAAAAGAAGAAAAGGCACAGCAAAGCGCAAAATAAATTCTCTGCGT
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Coding sequence (CDS) from alignment at chr2:520698..522443-

>NO02G01780.1 ID=NO02G01780.1|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr2:520698..522443- (Nannochloropsis oceanica)
ATGGCGACGCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGC
CAAGATTATTGGCCGCAACTCCCTTTCCCCCCTCAGTGGCTACACCATGG
ACAGCGGCTTGTTAGAGGACGCCAACCGCGACGGCAATACGGGATGGGCC
GCTGCTCGTTTGCAGCTGCCCCCCGCCTGGGTAGACTTAGTTGATCGCGT
TGATGCCCTCACAGCGCAGTTGGAAGCGAAAATGAAAGAATTGGAGGCGT
TGCATCGGAAGAGGCTGTTAGTAGGGTTCGATGATAGCGAGGCAGCCAAG
GAGAGAGACATCGATTACATGACTCAGGAAATAACAGCCACGTTCCGGGA
GGCCGAATCAATACTAAAACAATTAGGAGGAGGAGAAAGAAGTGAGGGAG
GTACTGAACGAGTGGTCACGCGAAATGTACAGAAGAGTATGGCAAAGCGG
ATACAGGGCTTGTCGATTGAGTTTCGAAAGACCCAGAAACATTACATGGC
GCAGCTGAAAGCGCAAAAGGCAGGGGCGGGGGGCGCGCCATTTTTTGACT
TTTTGTCAGCGGAGCATGGTGGTGCTGGAGGCTTGTTGGAGATAGAGAGG
AAGATGAGGGAGGAGGGAGGGATTGAGGGGGGATTTACCCCGGAGCAGCT
AGCGGTGTTGGAGGAGCAGGAGGCGGTGACGGCAGAGAGGGACCAGGAGA
TACAGCACATTGCCCGAAGCATAGAGGAGTTGTCACAGATTTTCAAGGAG
CTTGCCGTGTTGGTAATTGACCAGGGGACAGTGCTGGATCGGATTGATTT
CAACATGGAGCAGGTGGTTGAGCATACGAAGGAGGGTGTGCATCAGTTGG
TGAGGGCGGAGGAGAATCAGAAGTCGGCTAAGGCGACGAGGTGCATTGTG
TGCTTGTTGTGTGCAATTTTTGTGATGATTATCATTCTGATCATCAAGCA
CAGGTGA
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Synonyms
Publications