NO02G01780, NO02G01780 (gene) Nannochloropsis oceanica

Overview
NameNO02G01780
Unique NameNO02G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1746
Alignment locationchr2:520698..522443 -

Link to JBrowse

Properties
Property NameValue
DescriptionQa-syp4 tlg2p syntaxin 16-type
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:520698..522443 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of NO02G01780 vs. NCBI_GenBank
Match: EWM30526.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana])

HSP 1 Score: 448.7 bits (1153), Expect = 1.500e-122
Identity = 241/291 (82.82%), Postives = 258/291 (88.66%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLG-GGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTRK+VDYRTTAKIIGRNSLSPLSGYTMDSGLLEDA++D NTGWAAAR+QLPPAWVDLVDRVD LTAQ+EAKMKELEALHRKRLLVGFDDSEAA+ERDID++TQEIT   REAES LKQLG         TE++VTRNVQKSMAKRIQ LSIEFR +QKHYMAQLKAQK+GA  AP FDFL+A        LE ER+ REE G+EGGFTPEQLAVLEEQE  TAERD+EIQHIARSIEELSQIF+ELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ
Sbjct:    1 MATRDLTRKYVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDASQDSNTGWAAARMQLPPAWVDLVDRVDTLTAQIEAKMKELEALHRKRLLVGFDDSEAARERDIDFITQEITGMLREAESALKQLGXXXXXXXXXTEKLVTRNVQKSMAKRIQALSIEFRASQKHYMAQLKAQKSGA--APLFDFLAA----GHDTLETERRAREENGMEGGFTPEQLAVLEEQEVTTAERDREIQHIARSIEELSQIFRELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 285          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: CBJ48847.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 245.0 bits (624), Expect = 3.200e-61
Identity = 148/293 (50.51%), Postives = 193/293 (65.87%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAK-IIGRNSLSPLSGYTM-DSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMRE-EGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR+F + R     + G  S S   G    +SGLL+DA+    T WA+ R QLPP WVD VD V+     ++ K++EL ALH KRL+V FD+SEA +ERD++  T+E+TA FR AE  LK L G        E  V  N+Q++ A+++Q LS  FR +QK Y+ +L+AQK G G    FDFL+          E ER  +  +G ++ GF  +Q+AVLE+ E +  +RD EI +I +SIE+LS IFKELAVLVIDQGT+LDRIDFNMEQVVEHT+EGV QL RAEE+Q
Sbjct:    1 MATRDLTRRFAELRVLQHGVEGSASESKRPGDAFSESGLLDDAST--GTSWASTRHQLPPLWVDKVDGVEEDVRLIQLKLRELSALHTKRLMVTFDESEAERERDVEDATREVTALFRRAERQLKHLMGESAGLTPAEATVRNNIQRATARKLQSLSGGFRTSQKDYLRRLQAQKKGDGA---FDFLA----------EEERASKHAKGRLDPGFNEQQMAVLEDTEVLVGQRDGEINNIVKSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQVVEHTREGVSQLQRAEEHQ 278          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: XP_009036287.1 (hypothetical protein AURANDRAFT_53459 [Aureococcus anophagefferens] >EGB09176.1 hypothetical protein AURANDRAFT_53459 [Aureococcus anophagefferens])

HSP 1 Score: 202.2 bits (513), Expect = 2.400e-48
Identity = 136/303 (44.88%), Postives = 180/303 (59.41%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT---------TAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDS-EAAKERDIDYMTQEITATFREAESILKQL---GGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MA+RDLTRKFV++R+           +   R   S + GY  D+    +         A     LPP WVDLV+RV+    ++E   ++L ALH KRL+V FDD+ EAA + +I    +E T  FR  ES LK++   GG + S+  +ER +  N+Q+S+A RIQ L+ +FRK QK YM +LK+QK G+ G   FDFLS            E     EG     F   QLA + + E +  ERD EI+ IA SI+ELS IFKELAVLVIDQGTVLDRIDFNMEQV EHT++GV ++ +AE+ Q
Sbjct:    1 MASRDLTRKFVEWRSARPRRAAPGALRSNSREDRSLVGGYASDTSEPPEP--------ATLPPTLPPVWVDLVERVEGDVLKIERATRDLAALHTKRLMVSFDDAGEAALDDEIAAKQREATKLFRACESSLKRVAAHGGDDLSD--SERTIRSNIQRSVAMRIQALNTDFRKAQKEYMVRLKSQKEGSTGT--FDFLSGG----------EASSAAEG---VDFNDRQLAAVVDVENLVDERDGEIKQIAESIQELSTIFKELAVLVIDQGTVLDRIDFNMEQVAEHTRKGVVEIEKAEQYQ 278          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: CCI49289.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 192.6 bits (488), Expect = 1.900e-45
Identity = 121/293 (41.30%), Postives = 175/293 (59.73%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT--TAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSE-GGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR +++ RT   AKI+ R +   + GY  + G+L+   + G+  W        P WV  V+  D   A ++  +  L  LH KRL+V FD SE+  E++I++MT+EIT  FR+AE +LK +    + +    +    +NV+ ++A ++Q LS +FRK+QK Y+ ++K QK    G   FDFLS               + +   +E GF   Q+  ++  E +  ERD EIQ IA SI EL+ IFKELAVLVIDQGT+LDRID+NMEQVVE T++GV +L +AE+ Q
Sbjct:    1 MATRDLTRMYLELRTDAKAKILRRKN---MMGYADEEGILQ--RKGGHGKWDKREKGDSPPWVHAVEETDRYVAHIKELVDNLNKLHTKRLMVRFDGSESQNEQEIEHMTREITQEFRKAEKVLKSMDSKSQDDMSAADAKAHQNVKTALATQLQALSSDFRKSQKQYLLRVKNQKQ---GPVEFDFLSE-----------SSAVGKRAAMEMGFDQAQMTEVDIAEDIINERDAEIQKIATSITELATIFKELAVLVIDQGTILDRIDYNMEQVVEQTEKGVLELEKAEQTQ 274          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: EWM27922.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana])

HSP 1 Score: 189.5 bits (480), Expect = 1.600e-44
Identity = 115/247 (46.56%), Postives = 145/247 (58.70%), Query Frame = 0
Query:   45 GNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDD-SEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            G T W AAR QLPP WVD+VDRVD     ++ +MKEL  LHRKRLLV FD+ +EA KE++I  +T+ IT  FR  E  L  +GG    E   E  V RN+Q+SMA + Q LS  FR  QK Y+ +L+AQK GA G   F FL          +   R        E GF   Q+ VLE  EA+  ERD EI  IA  IE L+ + K L  LVIDQG+VLDRID+N++  V+  ++GV QL   E+ Q
Sbjct:   38 GGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEGGEPVLVPDNRS-------ETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQ 277          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: GBG28253.1 (Syntaxin-42 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 186.0 bits (471), Expect = 1.800e-43
Identity = 124/289 (42.91%), Postives = 173/289 (59.86%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAE-SILKQLGGGE-RSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIE-GGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRA 287
            MATR+LTRKF   R      G N      G+   S + +      NT        LPP WVD V++V+ +  Q+E ++ +L   HRKRL+V FD++E  ++R+ID +T++IT  FR+AE  +++++   + R+ G  + +V +N+Q+ +A+++Q LS+ FRK+QK YM +LK+QK   GG    D L A                E+  +E  GFT EQ  +LE  E    ERDQEIQ IA SI EL+ IFKELAVLVIDQGTVLDRID+NME VV  T + V QL +A
Sbjct:    1 MATRNLTRKFKQLRE-----GFNERRRPRGFGA-SPIADSTTEMMNT--------LPPHWVDSVEQVNDVIRQIEQQISKLHEAHRKRLMVRFDEAEGMRDREIDILTKQITDKFRQAERKLMERIAKPDARTRGTGDELVRKNIQRQLAQQLQTLSMSFRKSQKEYMTRLKSQK---GGGDLDDLLGADP--------------EQPSVEVDGFTDEQAVLLELAETNVEERDQEIQKIATSINELAAIFKELAVLVIDQGTVLDRIDYNMENVVMQTDKAVEQLKKA 258          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: GAX21461.1 (syntaxin 16 [Fistulifera solaris])

HSP 1 Score: 176.8 bits (447), Expect = 1.100e-40
Identity = 120/301 (39.87%), Postives = 173/301 (57.48%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTA---KIIG------RNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGG--FTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MA+RDLT  F++ R+     + +G       NS   L+    D  L E+       G     +  PPAWV+ V  V+    ++ + M++L+++H +R+   F       E  I+  TQ++T  FR AE +L+++G   R  GG E +V  NVQ+S+AKR+Q  S+ FR++Q+ Y+A+++ QK+G G AP    L                     G E G  FT +Q+AV+++  A    RDQEI  IA+SIEEL  IFKELAVLVIDQGT+LDRID+NME VVEHTK G+ QL +AE++Q
Sbjct:    1 MASRDLTSAFLERRSAVMRKRTLGGSPSKADNSYKKLTAGGHDLMLAEE-------GIQMTAMGQPPAWVNDVQAVEGCLTEISSMMEQLKSMHAQRVGSVFGKDLQNMEGKIERYTQDLTDQFRYAERLLQKVGMATRRVGGEEAMVGANVQRSLAKRLQEQSLAFRQSQRKYLAEVQTQKSG-GLAPDLGGLDL-------------------GAESGDFFTTQQMAVVDDLTAAVQSRDQEIVKIAQSIEELGTIFKELAVLVIDQGTILDRIDYNMEAVVEHTKTGIKQLEKAEKHQ 274          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: XP_009826246.1 (hypothetical protein H257_03727 [Aphanomyces astaci] >ETV84554.1 hypothetical protein H257_03727 [Aphanomyces astaci])

HSP 1 Score: 176.4 bits (446), Expect = 1.400e-40
Identity = 121/296 (40.88%), Postives = 169/296 (57.09%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRT--TAKIIGRNSLSPLS--GYTMDSGLLEDA--NRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRDLTR FV+ RT   AK+  R  ++  S   +   + L+ +A    D +   AAA  Q  P WVD V  V+   A+++  M++L  +  KRL+V FDDSE   ER+I+ +T +ITA FR+AE ILK+   G+      +    +NVQ+++A ++Q LS EFRK QK Y+ ++K Q+    G   FDFLS            E+K +   GI+GGF   QLA +E  E +  ERD+E+Q IA                VIDQGT+LDRID+NMEQVVE T+ G+ +L +AE  Q
Sbjct:    1 MATRDLTRPFVNLRTDVKAKVTRRRQMASHSPDAHHEANSLMRNAEMRSDIDLEAAAALAQDTPLWVDAVTDVNIHVARVKELMEKLTKIRTKRLMVRFDDSETDHEREIESITADITAEFRKAEGILKRKMNGKDGVTDADAKTRQNVQRALATQLQTLSGEFRKAQKEYLDRVKTQRQ---GPKEFDFLSE-----------EKKPKRSTGIDGGFMQAQLAEVELAEDLINERDREVQQIATXXXXXXXXXXXXXXXVIDQGTILDRIDYNMEQVVERTQAGIVELTKAETIQ 282          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: XP_008870848.1 (hypothetical protein H310_07269 [Aphanomyces invadans] >ETW00713.1 hypothetical protein H310_07269 [Aphanomyces invadans])

HSP 1 Score: 174.9 bits (442), Expect = 4.100e-40
Identity = 122/297 (41.08%), Postives = 170/297 (57.24%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTAKI-IGRN----SLSPLSGYTMDSGLLEDA--NRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MATRD+TR FV  RT  K+ + R     S SP   +  +S L+ +A    D +   AA+  Q  P WVD V  V+   A+++  M +L  +  KRL+V FDDSE A+ER+I+ +T +ITA FR+AE ILK+   G+      +    +NVQ+++A ++Q LS EFRK QK Y+ ++K Q+    G   FDFLS            E+K +   GI+GGF   QLA +E  E +  ERD+E+Q IA                VIDQGT+LDRID+NMEQVVE T+ G+ +L +AE  Q
Sbjct:    1 MATRDITRPFVILRTDVKVKVARRRQMASHSPDVHHEANS-LMRNAEMRSDIDLEAAASLAQNTPVWVDAVTDVNIHIARVKDLMDKLTKIRTKRLMVRFDDSETAQEREIESITADITAEFRKAEGILKRKMNGKDGVSDADAKTRQNVQRALATQLQTLSGEFRKAQKEYLDRVKTQRQ---GPKEFDFLSE-----------EKKPKRSTGIDGGFMQAQLAEVELAEDLINERDREVQQIATXXXXXXXXXXXXXXXVIDQGTILDRIDYNMEQVVERTQAGIVELEKAETIQ 282          
BLAST of NO02G01780 vs. NCBI_GenBank
Match: GAX17191.1 (syntaxin 16 [Fistulifera solaris])

HSP 1 Score: 171.8 bits (434), Expect = 3.500e-39
Identity = 119/301 (39.53%), Postives = 171/301 (56.81%), Query Frame = 0
Query:    1 MATRDLTRKFVDYRTTA---KIIG------RNSLSPLSGYTMDSGLLEDANRDGNTGWAAARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAKERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKRIQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAXXXXXXXXLEIERKMREEGGIEGG--FTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKELAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQ 291
            MA+RDLT  F++ R+     + +G       NS   L+    D  L E+       G     +   PAWV+ V  V+    ++ + M++L+++H +R+   F       E  I+  TQ++T  FR AE +L+++G   R  GG E +V  NVQ+S+AKR+Q  S+ FR++Q+ Y+A+++ QK G G AP    L                     G E G  FT +Q+AV+++  A    RDQEI  IA+SIEEL  IFKELAVLVIDQGT+LDRID+NME VVEHTK G+ QL +AE++Q
Sbjct:    1 MASRDLTSAFLERRSAVMRKRTLGGSPSKADNSYKKLTAGGHDLMLAEE-------GIQMTAMGQTPAWVNDVQAVEGCLTEISSMMEQLKSMHAQRVGSVFGKDLQNMEGKIERYTQDLTDQFRYAERLLQKVGMATRRVGGEEAMVGTNVQRSLAKRLQEQSLAFRQSQRKYLAEVQIQKNG-GLAPDLGGLDL-------------------GAESGDFFTTQQMAVVDDLTAAVHSRDQEIVKIAQSIEELGTIFKELAVLVIDQGTILDRIDYNMEAVVEHTKTGIKQLEKAEKHQ 274          
The following BLAST results are available for this feature:
BLAST of NO02G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30526.11.500e-12282.82qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis g... [more]
CBJ48847.13.200e-6150.51Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
XP_009036287.12.400e-4844.88hypothetical protein AURANDRAFT_53459 [Aureococcus... [more]
CCI49289.11.900e-4541.30unnamed protein product [Albugo candida][more]
EWM27922.11.600e-4446.56qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis g... [more]
GBG28253.11.800e-4342.91Syntaxin-42 [Aurantiochytrium sp. FCC1311][more]
GAX21461.11.100e-4039.87syntaxin 16 [Fistulifera solaris][more]
XP_009826246.11.400e-4040.88hypothetical protein H257_03727 [Aphanomyces astac... [more]
XP_008870848.14.100e-4041.08hypothetical protein H310_07269 [Aphanomyces invad... [more]
GAX17191.13.500e-3939.53syntaxin 16 [Fistulifera solaris][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006806NSK006806Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01780.1NO02G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574050gene_762Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR4gene185Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01780.1NO02G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01780 ID=NO02G01780|Name=NO02G01780|organism=Nannochloropsis oceanica|type=gene|length=1746bp
AGCAAGACGAAACAGGGGCGGCCACCTTCCAGCTGGGCCAGCGGGCCGGA
GAGGCGAGGCTGAGGGCAACGACAACTTTATCATCAAGCGTACGCCGGGA
TCGAAGCCCGTTCGCCCCCATCATTCGTCTTCCTTCTCCTGCGCTGCGCA
GAGCGACCATCACGAGGAGGTCCACCACCACGAATAGCAGCCATGGCGAC
GCGGGACTTGACGCGGAAGTTTGTGGACTACCGTACGACGGCCAAGgtaa
gaacaaaggaagagatgatgtgggagggtgggagggaagtatatgaagtg
tgggtggatgggtagaggatgggagggtggatgtgtagaacggatggaat
tgtgtatcaagagctgataaacgattttgtggctgctgaaaggaagctaa
gccgtagctgggatgggtacgacagaccttacatgcgatcggaaggagcc
gaaaggagggaggaattaattgggtgtgcttcgagaatctctacgagtcg
tcttcggtgtgttgagctcgcctgccacatccttcagaacttacataaat
cttttccattctcactcctcccagATTATTGGCCGCAACTCCCTTTCCCC
CCTCAGTGGCTACACCATGGACAGCGGCTTGTTAGAGGACGCCAACCGCG
ACGGCAATACGGGATGGGCCGCTGCTCGTTTGCAGCTGCCCCCCGCCTGG
GTAGACTTAGTTGATCGCGTTGATGCCCTCACAGCGCAGTTGGAAGCGAA
AATGAAAGAATTGGAGGCGTTGCATCGGAAGAGGCTGTTAGTAGGGTTCG
ATGATAGCGAGGCAGCCAAGGAGAGAGACATCGATTACATGACTCAGGAA
ATAACAGCCACGTTCCGGGAGGCCGAATCAATACTAAAACAATTAGGAGG
AGGAGAAAGAAGTGAGGGAGGTACTGAACGAGTGGTCACGCGAAATGTAC
AGAAGAGTATGGCAAAGCGGATACAGGGCTTGTCGATTGAGTTTCGAAAG
ACCCAGAAACATTACATGGCGCAGCTGAAAGCGCAAAAGGCAGGGGCGGG
GGGCGCGCCATTTTTTGACTTTTTGTCAGCGGAGCATGGTGGTGCTGGAG
GCTTGTTGGAGATAGAGAGGAAGATGAGGGAGGAGGGAGGGATTGAGGGG
GGATTTACCCCGGAGCAGCTAGCGGTGTTGGAGGAGCAGGAGGCGGTGAC
GGCAGAGAGGGACCAGGAGATACAGCACATTGCCCGAAGCATAGAGGAGT
TGTCACAGATTTTCAAGGAGCTTGCCGTGTTGGTAATTGACCAGGGGACA
GTGCTGGATCGGATTGATTTCAACATGGAGCAGGTGGTTGAGCATACGAA
GGAGGGTGTGCATCAGTTGGTGAGGGCGGAGGAGAATCAGAAGTCGGCTA
AGGCGACGAGGTGCATTGTGTGCTTGTTGTGTGCAATTTTTGTGATGATT
ATCATTCTGATCATCAAGCACAGGTGACGACATTCTCTCGCTTTAGGGTC
TCCTTTCTTTTGCTGCTCGTCCTTTTTGAAATAATATGTTTTCAAATATT
CAAAAATGTAGCCCCCATGTAACAAAATCTGAATGCATGTTTTTTTGGGT
AATTTAAGCGACTGTGTATGGGTGTTCACTATTCGTGACCGTGAGGACTT
TCCTGGTAAACGAAGACATGGATGGCCATGACCACCTTTTTTTTCCTTAC
CAAAAGAAGAAAAGGCACAGCAAAGCGCAAAATAAATTCTCTGCGT
back to top

protein sequence of NO02G01780.1

>NO02G01780.1-protein ID=NO02G01780.1-protein|Name=NO02G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATRDLTRKFVDYRTTAKIIGRNSLSPLSGYTMDSGLLEDANRDGNTGWA
AARLQLPPAWVDLVDRVDALTAQLEAKMKELEALHRKRLLVGFDDSEAAK
ERDIDYMTQEITATFREAESILKQLGGGERSEGGTERVVTRNVQKSMAKR
IQGLSIEFRKTQKHYMAQLKAQKAGAGGAPFFDFLSAEHGGAGGLLEIER
KMREEGGIEGGFTPEQLAVLEEQEAVTAERDQEIQHIARSIEELSQIFKE
LAVLVIDQGTVLDRIDFNMEQVVEHTKEGVHQLVRAEENQKSAKATRCIV
CLLCAIFVMIIILIIKHR*
back to top
Synonyms
Publications