NO02G01710, NO02G01710 (gene) Nannochloropsis oceanica

Overview
NameNO02G01710
Unique NameNO02G01710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2193
Alignment locationchr2:501460..503652 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription initiation factor tfiid subunit 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:501460..503652 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR037264TFIID_NTD2_sf
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR007582TFIID-su_WD40-assoc_reg
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
IPR001632Gprotein_B
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Homology
BLAST of NO02G01710 vs. NCBI_GenBank
Match: EWM30533.1 (transcription initiation factor tfiid subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 724.9 bits (1870), Expect = 2.100e-205
Identity = 444/636 (69.81%), Postives = 484/636 (76.10%), Query Frame = 0
Query:    1 MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAPAEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKNGRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASLVPKLHKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQGPAGGEGGSSS-------VHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGGRGEHGEENGVIRIWEVASGREVALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASLPLTPQSRFSTKATRVMDVAFTKRNLLLACGPV 630
            ME AQQEERVL WLKKRGYT+VAKHYEEDQAHAA GS E+  E  +SS P+   A  DE LLCKRIGEANQ+ALLFRS++++DP LYH++YNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVE GM+EAAR F QTWGPDHAE YQ+ELRSL AVQRPD LTAGNGFVKRALTDK VLRLCS SYRLLQ FLSDHNLL IMEILNE+V VV+EER P PRF+VVT         GGRG            +++H FTVRWR       D +DDSS PP+NA L  KL  L++K RQE A+G ADP  PTVLM +LTNTYDGC VARMT DATQLAAGFHDRAVRVFRLAG+GP G E G+ S         A  GPLIMRGHSQPV+G+SWAPEQQHLLSAS DGTVRLWDVAASRNVCVYR+PTDVPVWDV+F+PVGH+FASGSYDRV RVW TNRT+PVRLLVGHYSDVSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAG G  G                                               D TV TWD++GDFASL +S+ L P S F TKAT V+DV FTKRNLLLA GP+
Sbjct:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPS--GAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVT---------GGRG------------QISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGLG--GGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPI 611          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: XP_005852804.1 (transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >XP_005856200.1 transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >EKU20150.1 transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >EKU23028.1 transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 375.6 bits (963), Expect = 3.100e-100
Identity = 189/236 (80.08%), Postives = 207/236 (87.71%), Query Frame = 0
Query:    1 MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAPAEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAG 237
            ME AQQEERVL WLKKRGYT+VAKHYEEDQAHAA GS E+  E  +SS P+   A  DE LLCKRIGEANQ+ALLFRS++++DP LYH++YNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVE GM+EAAR F QTWGPDHAE YQ+ELRSL AVQRPD LTAGNGFVKRALTDK VLRLCS SYRLLQ FLSDHNLL IMEILNE+V VV+EER P PRF+VVTFR+DG+AG
Sbjct:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPS--GAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTFRNDGIAG 234          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: XP_009036249.1 (hypothetical protein AURANDRAFT_63680 [Aureococcus anophagefferens] >EGB09129.1 hypothetical protein AURANDRAFT_63680 [Aureococcus anophagefferens])

HSP 1 Score: 164.9 bits (416), Expect = 8.400e-37
Identity = 159/586 (27.13%), Postives = 242/586 (41.30%), Query Frame = 0
Query:   86 LYHQSYNELQTWT-CNALEAYKPELLTVAFPVFVHSYLKLV--------EHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGR-----------GEGDGSPRKNGRYEMAHGFTVRW-RVYRQ---KDGDHRDDSSMPPFNASLVPKLHKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARM-----TEDATQLAAGFHDRAVRVFRLAGQGPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDV---------AASRNVCVYRAPTDVPVWDVAFSPV--GHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGGRGEHGEENGVIRIWEVASGREVALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASL--PLTPQSRFSTKATRVMDVAFTKRNLLLACGPV 630
            L+  SY     W    ALE+ + EL    FPVF   +L +V        E G   A+R F + WG  HA+ +  E+ +L  V  P  + A + +  R    + V+ L   +  LL  FL+     +++++ NE+V +     G      +V    D V                 G   GS   +G           W   Y +   +DG  R  +  PP  A LV +                 D  +PTVL   +     G   AR+     + DAT+LA GF D ++R++R+     AG + GSS   A++  L+   H +PVY L+W+ E ++LLS  GDG   LWD          A+   +C Y A    P W VA+     GH FA+G  DR AR+++T+R  P+R+  GH++DVS                                                     +G  A   G     +G + +W++ SGR+++    HRG      +S DG  +A++G D ++  WD     A+L A+    + P     T  + V DVA+T  NL LA GP+
Sbjct:   16 LHVASYETFHRWVEGGALESVRCELSATLFPVFAQCFLVVVATEAEASGEDGGEPASRAFLERWGASHADRFAAEVEALRLVTSP-VVAAKDAYCARLRGGRWVVPLSGAAQALLGDFLTSTGNAAVLKVFNEKVTLDGTAPGRGEAAALVETSGDEVEXXXXXXXXXXXXXARLGVLLGSEALDGGAPAGRAPAPDWDDDYGRGLLRDGSRRPLAPPPP--AGLVGR------------GRAPLDALKPTVLDARVA----GADAARLSCCAASRDATRLAGGFADASLRLWRV--DELAGDDAGSSDAEAATTALV--AHDRPVYALAWSSESRYLLSGGGDGCCVLWDADAPGRGGPGASGAPLCSYAAHV-APCWSVAWCAASGGHVFATGGGDRTARLFATDRADPLRVFAGHWADVSAVCFHANAHYVLSASHDKTCRLWDVRAAGGPGRRCARVLDGAAGALAACDACPSGRKAAAAG----LDGGLHLWDLDSGRKLSSTKAHRGPAYVAKFSADGAAVATSGRDRSLKVWDA----AALAAAAGDDVAPAHAVETTDSPVFDVAWTPGNLCLASGPL 569          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: CCI43779.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 161.4 bits (407), Expect = 9.300e-36
Identity = 133/556 (23.92%), Postives = 212/556 (38.13%), Query Frame = 0
Query:   72 NALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRG---------GRGEGD----------------------GSPRKNGRYEMAH------GF----------TVRWRVYRQ--------------------------------------KDGDHRDDSSMP---------------------------------------------------------------PFNASLVPKL-------HKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQ---GPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSC 470
            N LLF  ++ ++P  Y +SY +L  W CN+L+  K EL  +AFP+FVHSYL+L+  G  + AR FF     DH   +Q E+R L  + + + L     + ++ +  +  ++L   S++LL  F+    +  ++ ILN R+Q+ +    P  + + +   D  + G           G+ E                        G P   G Y M++      G+           + W V  +                                      +  D+ D  + P                                                               PF A ++ KL        K++      + +       P+ L  T  N            DA  + A   D + RV+R   Q    P G     ++ + +    I+RGHS  VYG S++P+ +  L++S D T+RLW +AA  NV VYR+ +  PVWDV +   G++FAS S DR AR+WST+   P+R+  GH SDV C
Sbjct:  116 NHLLFHGLEGSNPYRYEESYRKLMEWICNSLDMLKYELHGIAFPLFVHSYLELMMKGFEKEARGFFIRHAKDHFRLHQEEIRMLSLISKVEHLKKSE-YAQQRMHSRFHIQLSMLSFQLLNAFVKQEQMFLLLSILNTRIQLSVTSFHPGLQIQQLNDTDASLIGSNLVDPVIWDQGKNEQKRSLSEHVADDIFLQARSNESEIGIPTTQGEYSMSYLVQIAGGYGSHVGDLNVIPICWGVLPECKIPRLDNSDAIILDDENSANNTNVGGHNGVPGVPAAIQSNDNNDKKTAPLDISKSTSADDLDPTQAFSNEERTLDATAVESQRKSKRFKTENEASSTKNVLKEIGPLPDRKTPFFADIMEKLVLRELAETKVAVMEDLRSRVSLGKSNLPSSLCFTFLNASTHITNIAFNSDAALVGASCEDGSFRVWRNDNQPLGTPTGAVASRNTPNENELRAILRGHSNAVYGSSFSPDSRFALTSSADSTIRLWSLAARSNVVVYRSHSGYPVWDVEYGHYGYYFASCSMDRTARLWSTDHITPLRIYAGHLSDVDC 670          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: CCI43780.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 161.4 bits (407), Expect = 9.300e-36
Identity = 133/556 (23.92%), Postives = 212/556 (38.13%), Query Frame = 0
Query:   72 NALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRG---------GRGEGD----------------------GSPRKNGRYEMAH------GF----------TVRWRVYRQ--------------------------------------KDGDHRDDSSMP---------------------------------------------------------------PFNASLVPKL-------HKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQ---GPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSC 470
            N LLF  ++ ++P  Y +SY +L  W CN+L+  K EL  +AFP+FVHSYL+L+  G  + AR FF     DH   +Q E+R L  + + + L     + ++ +  +  ++L   S++LL  F+    +  ++ ILN R+Q+ +    P  + + +   D  + G           G+ E                        G P   G Y M++      G+           + W V  +                                      +  D+ D  + P                                                               PF A ++ KL        K++      + +       P+ L  T  N            DA  + A   D + RV+R   Q    P G     ++ + +    I+RGHS  VYG S++P+ +  L++S D T+RLW +AA  NV VYR+ +  PVWDV +   G++FAS S DR AR+WST+   P+R+  GH SDV C
Sbjct:  139 NHLLFHGLEGSNPYRYEESYRKLMEWICNSLDMLKYELHGIAFPLFVHSYLELMMKGFEKEARGFFIRHAKDHFRLHQEEIRMLSLISKVEHLKKSE-YAQQRMHSRFHIQLSMLSFQLLNAFVKQEQMFLLLSILNTRIQLSVTSFHPGLQIQQLNDTDASLIGSNLVDPVIWDQGKNEQKRSLSEHVADDIFLQARSNESEIGIPTTQGEYSMSYLVQIAGGYGSHVGDLNVIPICWGVLPECKIPRLDNSDAIILDDENSANNTNVGGHNGVPGVPAAIQSNDNNDKKTAPLDISKSTSADDLDPTQAFSNEERTLDATAVESQRKSKRFKTENEASSTKNVLKEIGPLPDRKTPFFADIMEKLVLRELAETKVAVMEDLRSRVSLGKSNLPSSLCFTFLNASTHITNIAFNSDAALVGASCEDGSFRVWRNDNQPLGTPTGAVASRNTPNENELRAILRGHSNAVYGSSFSPDSRFALTSSADSTIRLWSLAARSNVVVYRSHSGYPVWDVEYGHYGYYFASCSMDRTARLWSTDHITPLRIYAGHLSDVDC 693          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: CCI43781.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 161.4 bits (407), Expect = 9.300e-36
Identity = 133/556 (23.92%), Postives = 212/556 (38.13%), Query Frame = 0
Query:   72 NALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRG---------GRGEGD----------------------GSPRKNGRYEMAH------GF----------TVRWRVYRQ--------------------------------------KDGDHRDDSSMP---------------------------------------------------------------PFNASLVPKL-------HKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQ---GPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSC 470
            N LLF  ++ ++P  Y +SY +L  W CN+L+  K EL  +AFP+FVHSYL+L+  G  + AR FF     DH   +Q E+R L  + + + L     + ++ +  +  ++L   S++LL  F+    +  ++ ILN R+Q+ +    P  + + +   D  + G           G+ E                        G P   G Y M++      G+           + W V  +                                      +  D+ D  + P                                                               PF A ++ KL        K++      + +       P+ L  T  N            DA  + A   D + RV+R   Q    P G     ++ + +    I+RGHS  VYG S++P+ +  L++S D T+RLW +AA  NV VYR+ +  PVWDV +   G++FAS S DR AR+WST+   P+R+  GH SDV C
Sbjct:   91 NHLLFHGLEGSNPYRYEESYRKLMEWICNSLDMLKYELHGIAFPLFVHSYLELMMKGFEKEARGFFIRHAKDHFRLHQEEIRMLSLISKVEHLKKSE-YAQQRMHSRFHIQLSMLSFQLLNAFVKQEQMFLLLSILNTRIQLSVTSFHPGLQIQQLNDTDASLIGSNLVDPVIWDQGKNEQKRSLSEHVADDIFLQARSNESEIGIPTTQGEYSMSYLVQIAGGYGSHVGDLNVIPICWGVLPECKIPRLDNSDAIILDDENSANNTNVGGHNGVPGVPAAIQSNDNNDKKTAPLDISKSTSADDLDPTQAFSNEERTLDATAVESQRKSKRFKTENEASSTKNVLKEIGPLPDRKTPFFADIMEKLVLRELAETKVAVMEDLRSRVSLGKSNLPSSLCFTFLNASTHITNIAFNSDAALVGASCEDGSFRVWRNDNQPLGTPTGAVASRNTPNENELRAILRGHSNAVYGSSFSPDSRFALTSSADSTIRLWSLAARSNVVVYRSHSGYPVWDVEYGHYGYYFASCSMDRTARLWSTDHITPLRIYAGHLSDVDC 645          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: CCI43782.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 161.4 bits (407), Expect = 9.300e-36
Identity = 133/556 (23.92%), Postives = 212/556 (38.13%), Query Frame = 0
Query:   72 NALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRG---------GRGEGD----------------------GSPRKNGRYEMAH------GF----------TVRWRVYRQ--------------------------------------KDGDHRDDSSMP---------------------------------------------------------------PFNASLVPKL-------HKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQ---GPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSC 470
            N LLF  ++ ++P  Y +SY +L  W CN+L+  K EL  +AFP+FVHSYL+L+  G  + AR FF     DH   +Q E+R L  + + + L     + ++ +  +  ++L   S++LL  F+    +  ++ ILN R+Q+ +    P  + + +   D  + G           G+ E                        G P   G Y M++      G+           + W V  +                                      +  D+ D  + P                                                               PF A ++ KL        K++      + +       P+ L  T  N            DA  + A   D + RV+R   Q    P G     ++ + +    I+RGHS  VYG S++P+ +  L++S D T+RLW +AA  NV VYR+ +  PVWDV +   G++FAS S DR AR+WST+   P+R+  GH SDV C
Sbjct:  118 NHLLFHGLEGSNPYRYEESYRKLMEWICNSLDMLKYELHGIAFPLFVHSYLELMMKGFEKEARGFFIRHAKDHFRLHQEEIRMLSLISKVEHLKKSE-YAQQRMHSRFHIQLSMLSFQLLNAFVKQEQMFLLLSILNTRIQLSVTSFHPGLQIQQLNDTDASLIGSNLVDPVIWDQGKNEQKRSLSEHVADDIFLQARSNESEIGIPTTQGEYSMSYLVQIAGGYGSHVGDLNVIPICWGVLPECKIPRLDNSDAIILDDENSANNTNVGGHNGVPGVPAAIQSNDNNDKKTAPLDISKSTSADDLDPTQAFSNEERTLDATAVESQRKSKRFKTENEASSTKNVLKEIGPLPDRKTPFFADIMEKLVLRELAETKVAVMEDLRSRVSLGKSNLPSSLCFTFLNASTHITNIAFNSDAALVGASCEDGSFRVWRNDNQPLGTPTGAVASRNTPNENELRAILRGHSNAVYGSSFSPDSRFALTSSADSTIRLWSLAARSNVVVYRSHSGYPVWDVEYGHYGYYFASCSMDRTARLWSTDHITPLRIYAGHLSDVDC 672          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: PRW57875.1 (transcription initiation factor TFIID subunit 5 [Chlorella sorokiniana])

HSP 1 Score: 160.6 bits (405), Expect = 1.600e-35
Identity = 144/515 (27.96%), Postives = 222/515 (43.11%), Query Frame = 0
Query:    1 MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAPAEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLT-----------AGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKNGRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASL--------------------------------VPKLHKLSSKYRQE---AAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQGPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSP--VGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDV 468
            +  A  +  VL +L+KR + +  K  E +   AA                  G   A +  L  R GE  +  LLF +    DP    Q+++    W  N+L+ YKPEL  V FP F H+YL LV  G    A+   QT   +H + + M++ + G+  R   LT           A +         +  +RLC  SY LL   L     L ++ ++NE ++  + +  P    E+    +D  AG   + +     +++   ++  G +V  R  +QK  +  + ++      +L                                +P   + +  Y  +     +  +    P+    T  NT         T DA+ +A GF D +VR++ L  +  AGG G   +  +        GHS PVYGL ++P+ + L SASGDGTVRLW      N+ VYR    +PVWDV+  P     +FAS   DR AR+WST+RT+P+RL VGH SDV
Sbjct:    5 LRDADVDRLVLQYLRKRNFKEAEKVLELEIKEAA----------------PTGEMIA-QQWLGGRGGEGVEEGLLFATAGEGDPAGLVQAFDRFAAWVDNSLDLYKPELARVLFPAFAHTYLNLVAMG----AQAEAQTLMGEHRQRF-MDIAAGGSTSRIQALTDLAGISSEEAIAASRTAAALRGQRFAIRLCRASYELLAQHLQLPKQLVMLGVVNEHIKFEVHDGAPATLAELAEVEEDLTAG-AMQADVVTINQRSLELQLLQG-SVEDRYAQQKAEEAEEVANQKAQAEALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFPLPAPAESAEDYLMKELAQRVPLSAEALPSCAFFTFFNTAQSLNCVAFTSDASIVAGGFADSSVRLYDLQARAAAGGAGDWVTYFS--------GHSGPVYGLDFSPDNELLFSASGDGTVRLWSREVQANLSVYRGHM-LPVWDVSACPYFAPFYFASCGADRTARMWSTDRTQPLRLFVGHTSDV 486          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: CCA25505.1 (transcription initiation factor TFIID subunit putati [Albugo laibachii Nc14])

HSP 1 Score: 159.5 bits (402), Expect = 3.500e-35
Identity = 134/556 (24.10%), Postives = 210/556 (37.77%), Query Frame = 0
Query:   72 NALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDG--------------------------------------------------------VAGRGGRG---------------------------------------------------------EGDGSPRKNGRYEMAHGFTV-----------------------RWRVYRQKDGDHRDDSS------------MPPFNASLVPKL-------HKLSSKYRQEAAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQ---GPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSC 470
            N LLF  ++ +DP  Y +SY +L  W CN+L+  K EL  +AFP+FVHSYL+L+  G  + AR FF     DH   +Q E+R L  + + + L     + ++ + ++  ++L   S++LL  F+    +  ++ ILN R+Q+ + +  P  + + +   D                                                          V   GG G                                                          GD + +KN   +++   T                          +  R K G+  ++S               PF A ++ KL        K +        +     + P+ L  T  NT           DA  + A   D + RV+R   Q    P G     +  + +    I RGHS  VYG S++P+ +  L++S D T+RLW +AA  NV VYR+ +  PVWDV +   G++FAS S DR AR+WST+   P+R+  GH SDV C
Sbjct:  136 NHLLFHGLEASDPYRYEESYGKLMEWICNSLDMLKYELHGIAFPLFVHSYLELILKGFEKEARGFFIRHAKDHFRLHQEEIRILSLITKAEHLKRSE-YAQQVIQNRFHIQLSMLSFQLLNAFVKQEQMFLLLSILNTRIQLSVTKFHPGLQIQQLNDADASSVSSKRLESTMSNQITSESERSLPEHVADEIFDQAKLNDSEIGVQITQGEYNMSYLVQAAGGYGSLIEDLNMIPICWGVLPDRKLPSQENLESSVMEDESFTNTSKGGGHNGAPSVPTTIQSGDSNEKKNAPLDISKAATTDDMDPTQGFSNGERSSDTMAIDSNRKSKRFKLGNEGNNSKSLLQEVGPLPDRKSPFFADILEKLVLRELPETKAAVLEDLRVRVSLGKSSLPSSLCFTFLNTSTHITNIAFNGDAALVGASCEDGSFRVWRNDNQPLGTPTGTIDSRNKPNDNELRAIFRGHSNAVYGSSFSPDSRFALTSSADSTIRLWSLAAQSNVVVYRSHSGYPVWDVEYGHFGYYFASCSMDRTARLWSTDHITPLRIYAGHLSDVEC 690          
BLAST of NO02G01710 vs. NCBI_GenBank
Match: PDM75675.1 (apb-3 [Pristionchus pacificus])

HSP 1 Score: 151.0 bits (380), Expect = 1.300e-32
Identity = 149/632 (23.58%), Postives = 240/632 (37.97%), Query Frame = 0
Query:   10 VLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAPAEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQMELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNLLSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKNGRYEMAHGFTVRWRVYR--QKDGDHRDDSSMPPFNASLVPK--LHKLSSKYRQE-----------AAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFRLAGQGPAGGEGGSSSV----------------HASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGDGTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWSTNRTKPVRLLVGHYSDVSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGGRGEHGEENGVIRIWEVASGREVALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVH------GDFASLTASLPLTPQSR 605
            +L +L+K GYT   +             T   E    SS PA    P++E +  +                          +  L T    + + Y+ E   + FPVF HSYLKL+  G    A  F   +G     AY+ E+R+L ++    Q  A N  V+  +  K ++++C +S + L+  L  + L SI  IL ER ++ IE            ++   + G+ G+          G+++M HG      +Y   +     R+D+     NA +  +  L  LS   RQE             IG   P  P+V   T  N + G     ++ED++ LA GF D  + VF L          G+  +                + S+G +   GHS P+Y ++++P+++ L S SGD T+RLW +    N  V R     P+W +AF   G+++A+ S    A VW+T+R  P+R+     S VS                                                                G ++  +R+W+V SG  V   +GHR  +    +S  G+ + S   D     WD+       GD  +    +P    SR
Sbjct:  243 MLGFLRKYGYTDTEE-------------TLARESAIRSSGPASNQLPSNEAVAAE--------------------------FATLLTHVDASFDFYQAEFSLLIFPVFAHSYLKLLIDGQPNLAFSFMDKYGLRVPSAYEEEVRTLASLTNVAQALA-NPIVQNLMKKKFLVKICKSSMKQLEPLL--NRLPSISNILKERAEIEIE------------WQMGAIVGQVGK----------GKHKMYHGMMKEECIYALDRMKSRQREDAKRREMNAPVADRIPLPPLSECLRQERLRAMKDSHKMCVIGQDQP--PSVCFYTTLNGHGGVSSCDVSEDSSYLALGFGDSGISVFALNEDKKMRKMKGADDLDKLDTESDDIMEEMVENESAGVVTFNGHSAPIYSINFSPDKRILASTSGDNTIRLWSMQTQTNAVVIRVA--APIWQIAFCQRGYYYATASSSHTAAVWTTDRMHPLRIFADPLSHVSSVDFHANCNYIVG---------------------------------------------------GSDDRYVRVWDVLSGACVRTFTGHRAPVRCTKFSPCGRYVVSVDGDGVTLVWDLSSQRLMGGDTRTFPTRIPSLSWSR 755          
The following BLAST results are available for this feature:
BLAST of NO02G01710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30533.12.100e-20569.81transcription initiation factor tfiid subunit 5 [N... [more]
XP_005852804.13.100e-10080.08transcription initiation factor tfiid subunit, par... [more]
XP_009036249.18.400e-3727.13hypothetical protein AURANDRAFT_63680 [Aureococcus... [more]
CCI43779.19.300e-3623.92unnamed protein product [Albugo candida][more]
CCI43780.19.300e-3623.92unnamed protein product [Albugo candida][more]
CCI43781.19.300e-3623.92unnamed protein product [Albugo candida][more]
CCI43782.19.300e-3623.92unnamed protein product [Albugo candida][more]
PRW57875.11.600e-3527.96transcription initiation factor TFIID subunit 5 [C... [more]
CCA25505.13.500e-3524.10transcription initiation factor TFIID subunit puta... [more]
PDM75675.11.300e-3223.58apb-3 [Pristionchus pacificus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006793NSK006793Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01710.1NO02G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667768gene_768Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|667758gene_754Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g31gene177Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01710.1NO02G01710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01710 ID=NO02G01710|Name=NO02G01710|organism=Nannochloropsis oceanica|type=gene|length=2193bp
ACAGTTATCACTATAACCCGCTTCAGCCGACGTCACGCCCGCCTCGTCTT
GCCTTCCCTTTTCACGGCCGTTGCCCGCACAGCAACGGCCTTGCCATCAT
CGCAACGCGAACCAGTCGCGTCAGGCAGCCTCCACCATGGAGCAGGCACA
GCAGGAAGAACGGGTGCTGCTATGGCTGAAGAAGCGAGGTTACACCCAGG
TGGCTAAGCATTACGAGGAAGACCAAGCGCACGCCGCGGAAGGCAGCACT
GAAGATAATGAGGAGGGCAGCGAGAGCTCAGCTCCCGCCGAGGGTAGTGC
CCCGGCAGACGAGCATCTCTTGTGCAAGCGCATAGGAGAAGCGAATCAAA
ATGCTTTACTCTTTCGTTCTATCCAGTTGGCGGACCCGACGCTCTACCAT
CAAAGCTACAACGAGCTGCAGACCTGGACATGCAACGCCTTAGAGGCATA
CAAGCCCGAGCTCCTCACCGTGGCCTTCCCTGTCTTCGTCCACAGCTATC
TCAAGCTCGTCGAACATGGCATGGTCGAAGCAGCGCGAATATTTTTTCAA
ACATGGGGACCAGACCATGCCGAGGCCTATCAAATGGAGCTCCGCAGCCT
GGGAGCCGTACAGCGCCCCGACCAATTGACAGCTGGGAACGGGTTCGTCA
AACGCGCATTGACTGACAAGTTAGTCCTTCGTCTCTGCAGTACCAGCTAC
CGCCTCTTGCAAGGCTTTTTGAGCGACCACAATCTTCTTTCGATCATGGA
GATTCTGAATGAGCGGGTTCAGGTTGTGATTGAGGAAAGGGGCCCTCGAC
CTCGCTTTGAAGTAGTCACCTTCCGAGACGACGGCGTGGCCGGCCGTGGA
GGACGGGGAGAAGGAGATGGTTCGCCGCGTAAGAATGGGCGATATGAGAT
GGCCCACGGGTTTACTGTCCGATGGCGGGTGTACCGACAGAAGGACGGCG
ATCACCGAGATGACAGCAGCATGCCTCCTTTTAATGCCTCGCTCGTCCCA
AAACTTCACAAGCTCTCCTCAAAATATCGCCAAGAGGCAGCCATTGGCAC
CGCGGACCCCACTCGCCCTACCGTCTTAATGGGCACCTTGACCAATACAT
ACGATGGGTGCATCGTGGCGCGAATGACAGAGGACGCAACTCAACTCGCC
GCTGGCTTTCACGACCGGGCCGTGCGTGTTTTCCGCCTGGCAGGGCAGGG
CCCCGCAGGAGGCGAGGGAGGGAGCAGTAGCGTGCATGCAAGTAGTGGCC
CACTTATTATGAGAGGGCATTCCCAACCGGTGTATGGCCTGAGCTGGGCG
CCGGAACAGCAGCATTTGCTCTCGGCGTCCGGGGATGGTACGGTCAGGCT
GTGGGACGTTGCGGCTTCGAGAAATGTGTGTGTGTATCGGGCGCCGACGG
ATGTGCCGGTGTGGGATGTGGCATTCTCGCCGGTCGGACATTTCTTTGCG
AGCGGGTCGTATGATCGGGTGGCGAGGGTGTGGAGTACGAATAGAACTAA
GCCGGTGCGATTGCTGGTCGGGCATTACTCTGATGTGAGTTGTGTGGCGT
GGCACCCTAATTGCAATTACGTGGTGACAGGCTCGTGGGATAAGACGGTG
CGATTGTGGGATTTGGGCAGTGGTAGATGTTTCCGCATGTATTCGGGGCA
TTTTGGGCCCGTGACGGCCTTGGTAGTCAGTCCAGATGGTCAGTTTGTGG
CGGGAGCGGGGGCGGGTGGCAGGGGAGAGCACGGGGAAGAGAATGGGGTG
ATTCGAATTTGGGAGGTTGCCTCGGGAAGGGAGGTAGCATTGTTAAGTGG
GCATAGAGGGGGTATCAATCGGTTGACGTACAGTCATGATGGGAAGGTAC
TTGCGAGCGCGGGGGAAGATGAAACGGTGTGCACTTGGGATGTTCATGGG
GACTTTGCGAGTTTGACAGCATCCTTGCCCTTGACGCCACAGAGTCGGTT
CTCGACCAAGGCCACCCGGGTGATGGATGTAGCATTCACGAAGCGGAATT
TGTTGCTAGCGTGTGGGCCAGTTTCGGGGTAAGGTGAGGACGAGGCAGGG
GGTGAGGGAGGGGAGGGGAGAGCAACTAACTGTGCTGCGTTTGTTTGAAA
CAGAATAATGTACGGAAGAAAGATAACGATGCGCTGATCAAAACGACAAA
GAATCAAGTAGTTACCAGAGAAAAGACAAAAAACGGGACAAAA
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protein sequence of NO02G01710.1

>NO02G01710.1-protein ID=NO02G01710.1-protein|Name=NO02G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEQAQQEERVLLWLKKRGYTQVAKHYEEDQAHAAEGSTEDNEEGSESSAP
AEGSAPADEHLLCKRIGEANQNALLFRSIQLADPTLYHQSYNELQTWTCN
ALEAYKPELLTVAFPVFVHSYLKLVEHGMVEAARIFFQTWGPDHAEAYQM
ELRSLGAVQRPDQLTAGNGFVKRALTDKLVLRLCSTSYRLLQGFLSDHNL
LSIMEILNERVQVVIEERGPRPRFEVVTFRDDGVAGRGGRGEGDGSPRKN
GRYEMAHGFTVRWRVYRQKDGDHRDDSSMPPFNASLVPKLHKLSSKYRQE
AAIGTADPTRPTVLMGTLTNTYDGCIVARMTEDATQLAAGFHDRAVRVFR
LAGQGPAGGEGGSSSVHASSGPLIMRGHSQPVYGLSWAPEQQHLLSASGD
GTVRLWDVAASRNVCVYRAPTDVPVWDVAFSPVGHFFASGSYDRVARVWS
TNRTKPVRLLVGHYSDVSCVAWHPNCNYVVTGSWDKTVRLWDLGSGRCFR
MYSGHFGPVTALVVSPDGQFVAGAGAGGRGEHGEENGVIRIWEVASGREV
ALLSGHRGGINRLTYSHDGKVLASAGEDETVCTWDVHGDFASLTASLPLT
PQSRFSTKATRVMDVAFTKRNLLLACGPVSG*
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Synonyms
Publications